mRNA_E_fasciculatus_S2_contig7503.15669.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7503.15669.1
Unique NamemRNA_E_fasciculatus_S2_contig7503.15669.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7503.15669.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNV0_ECTSI)

HSP 1 Score: 394 bits (1012), Expect = 4.680e-133
Identity = 253/331 (76.44%), Postives = 258/331 (77.95%), Query Frame = 1 
Query:    1 MMATRPQSSEEGGXXXXXTAVAQEEKSVPGVSKDALREERKPLLDLDDVAQLENELAACFDAPPPPPLNIRREEPVATVSTWMPMAEHRYVETHIAPPTASDVAAARARGELPQLLQEGQEQEGXXXXXXXXXXXXXXAQATRVSDFSSLYSEAPHREESTGQLYPVLAPSAPSSDTMRIPMPPPAVPTAAAPTAAQALSAAFGVAARGGGAVAVAEAAAASLTPATA------------ARERSQDVASSGEVVEELLSENERLRGIIQEMSDELERVSVQAGGGSTAAAGATQGRQSVPVRA----ATSVTPSQRLLGRYPGAQAEAAR 945
            MMATRPQSS EGGXXXXX   AQEEKSVPGVSKDALREERKPLLDLDDVAQLENELAACFDAPPPPPLNIRREEPVATVSTWMPMAEHRYVETH+APPTASDVAAARARGELPQLLQEGQEQEG              AQATRVSDFSSLYS APHREESTGQLYPVLAPSAP SDTMRIPMPPPAV         +A SAAFG A R  GA A                          ARERSQDV+SSGEVVEELLSENERLR IIQEMSDELER SV A GGSTAAAGATQGRQS   RA    ATS TP++RLLGRYPGAQAEAAR
Sbjct:    1 MMATRPQSSGEGGXXXXXXX-AQEEKSVPGVSKDALREERKPLLDLDDVAQLENELAACFDAPPPPPLNIRREEPVATVSTWMPMAEHRYVETHVAPPTASDVAAARARGELPQLLQEGQEQEGGQLQEQQ-------AQATRVSDFSSLYSAAPHREESTGQLYPVLAPSAPFSDTMRIPMPPPAV-XXXXXXXXRAPSAAFGAAVRDDGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXARERSQDVSSSGEVVEELLSENERLRAIIQEMSDELERGSVPAIGGSTAAAGATQGRQSSAARAXXXAATSATPTERLLGRYPGAQAEAAR 322
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7503.15669.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.680e-13376.44protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNV0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7503contigE_fasciculatus_S2_contig7503:3543..7119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size948
Hectar predicted targeting categoryother localisation
Exons5
Cds size948
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842412.3735085-CDS-E_fasciculatus_S2_contig7503:3542..36321696842412.3735085-CDS-E_fasciculatus_S2_contig7503:3542..3632Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7503 3543..3632 +
1696842412.3829155-CDS-E_fasciculatus_S2_contig7503:4085..42081696842412.3829155-CDS-E_fasciculatus_S2_contig7503:4085..4208Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7503 4086..4208 +
1696842412.3915803-CDS-E_fasciculatus_S2_contig7503:5396..56571696842412.3915803-CDS-E_fasciculatus_S2_contig7503:5396..5657Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7503 5397..5657 +
1696842412.4007156-CDS-E_fasciculatus_S2_contig7503:6109..64241696842412.4007156-CDS-E_fasciculatus_S2_contig7503:6109..6424Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7503 6110..6424 +
1696842412.4107592-CDS-E_fasciculatus_S2_contig7503:6960..71191696842412.4107592-CDS-E_fasciculatus_S2_contig7503:6960..7119Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7503 6961..7119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7503.15669.1prot_E_fasciculatus_S2_contig7503.15669.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7503 3543..7119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7503.15669.1

>prot_E_fasciculatus_S2_contig7503.15669.1 ID=prot_E_fasciculatus_S2_contig7503.15669.1|Name=mRNA_E_fasciculatus_S2_contig7503.15669.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=316bp
MMATRPQSSEEGGSAAAATAVAQEEKSVPGVSKDALREERKPLLDLDDVA
QLENELAACFDAPPPPPLNIRREEPVATVSTWMPMAEHRYVETHIAPPTA
SDVAAARARGELPQLLQEGQEQEGGQQQQQQQQQQEQQAQATRVSDFSSL
YSEAPHREESTGQLYPVLAPSAPSSDTMRIPMPPPAVPTAAAPTAAQALS
AAFGVAARGGGAVAVAEAAAASLTPATAARERSQDVASSGEVVEELLSEN
ERLRGIIQEMSDELERVSVQAGGGSTAAAGATQGRQSVPVRAATSVTPSQ
RLLGRYPGAQAEAAR*
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mRNA from alignment at E_fasciculatus_S2_contig7503:3543..7119+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7503.15669.1 ID=mRNA_E_fasciculatus_S2_contig7503.15669.1|Name=mRNA_E_fasciculatus_S2_contig7503.15669.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3577bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7503:3543..7119+ (Ectocarpus fasciculatus EfasUO2)
ATGATGGCAACGAGGCCCCAGTCGTCTGAGGAGGGTGGATCTGCTGCTGC
AGCCACTGCCGTGGCACAGGAGGAGAAGAGCGTACCGGGGGTGAGACATG
CTCAGGAATAGTACACATCTGGAATATGCCTCCTGCGGTGTGCATCGAAA
GCGATTGGAGTGTTTTGCACTGCTGGGTGCGTGTCCCGCTGTGTGAACTT
GTTGAAGCAACCTAACGCTGCCTACTGCTGCCTACTGCTGCCTACTGCCG
CACAACAGTACTGCCGTATAGTAGCACCGACGGCACGAGAGAAGGGGAGA
GGCAGACAGACAAGAGAGAGAGAGAGAGAGAAAGGGAGCGAGAGGTCAAA
ACGCGTGTGGAGACTCTGCCAGCAGCCGTAATTCCCAAGAAGTAGTGGCG
CAGCCCACGCTACTGCTGCGGCCGAGGCGCGTCTGTCTGTAATTTGGTGT
CGACGTTTCTCCAGTGTTCTCGTAATGGAATGTGGTGTATTTGGTATTTA
ACAACCGGCCTTTCCTTTCCTTTCTCTCCGACCTGCTCGGCAGGTGAGCA
AGGACGCGCTCAGAGAGGAGAGGAAGCCTCTGCTGGACTTGGACGACGTC
GCGCAGCTCGAGAACGAGCTCGCCGCGTGCTTCGACGCGCCTCCGCCTCC
TCCTCTGAACATACGGGTGGGTACTACTGCCGGGCTTGGGGGGTGGCAAT
GGGTGTTTCCTTACTTTTTTTATGGAACGAGCGAGTCCAGGAAACTTCTT
CTGGAGGACACGGCTCTCTGCTGAGTATCGCCAAGTACGCTGTCTTACCC
GCTATTTCAAGATGCAAGTATTCGTGCGCACCTGTGGCTCACGCGGTCCC
TGTGGTGATCTAGGTGCACATTTGCGTGCCATTCCTTTCAGCTCCCAGGG
AAAAAGTGCGGACGCGCACAACAACAAGTACAGCAGTTGCCAGCAAGAGC
CAAATAGCTGGTCTCGTACTGATACTATTTGTTGTTTGCATTTTGCACAC
ACGCAACCACCAAGTAGCACAAGACTGTCAGCAAGCAAGCTGTTGAAGCA
GAAACGACGACCGGTGATAGTATAGCACCTTTAAATGCACATGCACACCA
ACCAAGCCCCCAACTCTTGATGGGTGTTGGGGTCGATCGCCGGTAGTTGT
ATGACGAAAGGACGCGTAAGGACGTAAACCTGCCGCATGTCCGTCCCGCC
TCATGTCTACATGTCTACGTAACTCCAAACAGGCACATTACGTATTTCTG
CATGCACAGCCAATAAATGTTCTCTCGTGATGCTGTTGGCGGTCATTTGT
GTGTACCGTCAAAGAGCCGGTTTCATCGGCGTACGCTTCGTAAGACCGTA
TGCATACAATTTGTAAGTACGCCGCCTGTCTTGCAGAGGTCGATTGCGCA
GGCTGCGAAGCCACGCCCCAGGAACGCGGCGAACGTGTCACACATAATAT
GATATGTGCAGATAGGTTGTCGTTGGTCTCCAAACGGAGGGTAGTACATC
CGAATCCCAGAAGTCAGGTCCAGGCTGACTTTCATGTGATGTGAAGGTTA
CAATACCCGTAACCCGCTTGGTGTGGCAGTCATCGCTGAGGCCCCGACAC
TTCTTTTTTTTTTAGGTTTTGACAATCTCGGGCTAGTTTCTTGCAGAAGA
GAGATTGAGAGAGGATCGGAGTCCCATTACGTAATGACTGCTCTGTCCCT
ACCGCTTGCCCCCCCCCCCCCCCCCCCCCCCTTTTTCTTCCCCCCCCCGC
AAAAACCGCGGGGGGCCCCTTGGGCCGGGGGCGGGGAGGGGAGGGACCCC
TTAGTGGNNNNNNNNNNCCCCCCACCCACCCCACCCCATTTGTCGTGCCC
CCAGCGAGAAGAGCCTGTCGCGACCGTTTCGACGTGGATGCCGATGGCAG
AGCACCGTTACGTGGAGACGCACATTGCGCCGCCGACCGCCTCGGATGTT
GCCGCGGCGCGGGCGAGAGGAGAGCTGCCGCAGCTGCTGCAGGAGGGGCA
AGAGCAGGAGGGGGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGC
AACAAGCACAGGCGACGAGGGTCTCTGACTTCAGCAGCCTGTACTCCGAG
GCTCCGCACCGCGAGGTGTAAGCGGTGTTGCCAAGTGTAGATACCGTAGT
AGCCGGAACGGGGCTGTGGGGTATAGTAGTTACACCTTTTTGATGGATTA
TTGGGGAGCTTTCCCGCGAAGGGTTGTGTCGACGTGGAATGGCGAGCTTA
CGCCGCTGTTTTTTTTGCGATTCTGTTGCTTCTGTGCCGTGGGTGGCGTG
GCGGTGTGCAAACACTTTTTCATGTCTGGTGCTAGAGAAAGGTTGGACGT
TTCTACAGCGGCGGTGTCACGCCTACCGTGCCTAGTACTTGCCGAGATCA
AACGCGATCAAACACTCCTGCGGGAATCATCACCCGATCAAAGTGCATGT
CCAGCCAGATGCTGCCTATCGCGGCCTCGCTTGTGGAACGAGAACAAACT
GACACCCCTCCCCCCCCGCTCCGCACGACATGGGAACACTCTTCGTGTAA
TCAACACCACGACACAGGAGTCGACGGGTCAGCTGTACCCGGTCTTGGCC
CCCTCCGCGCCGTCCTCCGACACGATGAGGATACCGATGCCGCCGCCGGC
CGTACCAACCGCCGCGGCGCCAACAGCGGCACAGGCGCTGTCGGCCGCTT
TTGGCGTGGCCGCGCGCGGCGGCGGGGCGGTGGCGGTGGCGGAGGCGGCG
GCGGCGTCGTTGACCCCGGCGACGGCGGCGAGAGAGAGGAGCCAGGACGT
GGCGTCGTCGGGGGAGGTTGTCGAAGAGCTCCTGTCGGAGAACGAGCGTT
TGCGCGGTATCATTCAGGAAATGTCCGATGAGGTGTGTGTGCTTGTGTTT
TTTCTTAAATTATTATTAGCATTGACCGCGCCAACCGGCTGACCAACGAA
AAGACGTCAGTCTCAGTGCGGTGGAAAACACAAAATGCTTCTCTCTCGCC
CTCTTTGTGTGTATTGTTATTGAACGTCGACGGCACTATGCATATATGAC
CGGTTGGCTAAAGAAAAGGCGTCGCCAGTCTCAGTGCGGTTGAATGTGTA
CAGAAAAATTGTTAGGAAGGCCAAAAAAAGTGCGTGTGTGCCTGTGTGTT
TCTTGACACGCATCGACTGCGCTAACCGGCTGGCCCGTGAACACACGCAA
CGTGAAGATGGCGTGCGTGCGTGCGCGTGTGTAACCTATTTTATTGGTGA
CTATTGCCTTCTCGCCGACGTCGTTGAGCCGCCATCAAGCTCTCAAGTTG
GGGTCGCGTGTTAAGTGCTGTCACTCCCGCCGGACCTAACTCCCCCCCGC
GCCCTCTGTTTGCTGCCGTGCTTCCCGTCTCCCCCCCCCCCAAAAAAAAA
CGGTTGTTTCGGATTTAGCTGGAACGAGTATCGGTGCAGGCAGGAGGCGG
CTCCACGGCCGCGGCCGGGGCGACGCAAGGGCGGCAATCCGTGCCCGTAC
GTGCGGCCACGTCCGTTACACCTAGCCAGCGATTACTGGGCCGATATCCC
GGGGCTCAGGCGGAAGCAGCGAGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7503:3543..7119+

>mRNA_E_fasciculatus_S2_contig7503.15669.1 ID=mRNA_E_fasciculatus_S2_contig7503.15669.1|Name=mRNA_E_fasciculatus_S2_contig7503.15669.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=948bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7503:3543..7119+ (Ectocarpus fasciculatus EfasUO2)
ATGATGGCAACGAGGCCCCAGTCGTCTGAGGAGGGTGGATCTGCTGCTGC
AGCCACTGCCGTGGCACAGGAGGAGAAGAGCGTACCGGGGGTGAGCAAGG
ACGCGCTCAGAGAGGAGAGGAAGCCTCTGCTGGACTTGGACGACGTCGCG
CAGCTCGAGAACGAGCTCGCCGCGTGCTTCGACGCGCCTCCGCCTCCTCC
TCTGAACATACGGCGAGAAGAGCCTGTCGCGACCGTTTCGACGTGGATGC
CGATGGCAGAGCACCGTTACGTGGAGACGCACATTGCGCCGCCGACCGCC
TCGGATGTTGCCGCGGCGCGGGCGAGAGGAGAGCTGCCGCAGCTGCTGCA
GGAGGGGCAAGAGCAGGAGGGGGGGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGGAGCAACAAGCACAGGCGACGAGGGTCTCTGACTTCAGCAGCCTG
TACTCCGAGGCTCCGCACCGCGAGGAGTCGACGGGTCAGCTGTACCCGGT
CTTGGCCCCCTCCGCGCCGTCCTCCGACACGATGAGGATACCGATGCCGC
CGCCGGCCGTACCAACCGCCGCGGCGCCAACAGCGGCACAGGCGCTGTCG
GCCGCTTTTGGCGTGGCCGCGCGCGGCGGCGGGGCGGTGGCGGTGGCGGA
GGCGGCGGCGGCGTCGTTGACCCCGGCGACGGCGGCGAGAGAGAGGAGCC
AGGACGTGGCGTCGTCGGGGGAGGTTGTCGAAGAGCTCCTGTCGGAGAAC
GAGCGTTTGCGCGGTATCATTCAGGAAATGTCCGATGAGCTGGAACGAGT
ATCGGTGCAGGCAGGAGGCGGCTCCACGGCCGCGGCCGGGGCGACGCAAG
GGCGGCAATCCGTGCCCGTACGTGCGGCCACGTCCGTTACACCTAGCCAG
CGATTACTGGGCCGATATCCCGGGGCTCAGGCGGAAGCAGCGAGGTGA
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