mRNA_E_fasciculatus_S2_contig7501.15667.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7501.15667.1
Unique NamemRNA_E_fasciculatus_S2_contig7501.15667.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7501.15667.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK7_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.320e-32
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 2
Query:   71 EQQQLEERRRNAGLVWSFVGGSFAGLCQAVVIIPTDIIKIKLQIQVGAPGSSNLLYRGPVDCAMKIFKT 277
            + Q++EERRRNA L+WSFVGGSFAGLCQAV+IIPTDIIKIKLQIQVGAPGSSNL YRGPVDCAM IF T
Sbjct:  133 QSQRVEERRRNAELLWSFVGGSFAGLCQAVIIIPTDIIKIKLQIQVGAPGSSNLKYRGPVDCAMSIFNT 201          
BLAST of mRNA_E_fasciculatus_S2_contig7501.15667.1 vs.
Match: Mitochondrial (carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6G9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 8.880e-11
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 2
Query:  119 SFVGGSFAGLCQAVVIIPTDIIKIKLQIQVGAPGSSNLLYRGPVDCAMKIFKT 277
            +F  GS AG CQ VV++P+D IK KLQ+QVG+  SS L Y+GP+DCA ++ +T
Sbjct:  105 TFAAGSCAGACQTVVLLPSDNIKTKLQVQVGSLHSSQLRYKGPLDCARQLVRT 157          
BLAST of mRNA_E_fasciculatus_S2_contig7501.15667.1 vs.
Match: Solute (carrier family 25 member 45-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.030e-8
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  122 FVGGSFAGLCQAVVIIPTDIIKIKLQIQVGAPGSSNLLYRGPVDCAMKIFKT 277
            FV G+FAG CQ VV++PT+ IK KLQ+   A  +  L Y+G +DCA ++ +T
Sbjct:   98 FVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRT 149          
BLAST of mRNA_E_fasciculatus_S2_contig7501.15667.1 vs.
Match: Hypothetical (protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LS03_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.800e-8
Identity = 24/55 (43.64%), Postives = 37/55 (67.27%), Query Frame = 2
Query:  113 VWSFV-GGSFAGLCQAVVIIPTDIIKIKLQIQVGAPGSSNLLYRGPVDCAMKIFK 274
            +W ++  G  AG+C A V+ P ++IK +LQ+Q  A G   +LY+GP+DC +KI K
Sbjct:  129 MWKYIISGGTAGICVAFVLTPVELIKCRLQVQNAATGEGAILYKGPLDCLLKIVK 183          
BLAST of mRNA_E_fasciculatus_S2_contig7501.15667.1 vs.
Match: mitochondrial (basic amino acids transporter-like n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A88FE)

HSP 1 Score: 56.2 bits (134), Expect = 3.080e-7
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 2
Query:  125 VGGSFAGLCQAVVIIPTDIIKIKLQIQVGAPGSSNLLYRGPVDCAMKIFK 274
            V GS AGL Q ++I+P D++KIKLQ+Q  A    +L Y+GP+DC  KI++
Sbjct:  102 VAGSVAGLAQCLIIVPLDLVKIKLQMQTEAKRKQSL-YKGPIDCIKKIYQ 150          
BLAST of mRNA_E_fasciculatus_S2_contig7501.15667.1 vs.
Match: Uncharacterized (protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UEY9_CAPTE)

HSP 1 Score: 52.8 bits (125), Expect = 5.620e-6
Identity = 30/75 (40.00%), Postives = 43/75 (57.33%), Query Frame = 2
Query:   74 QQQLEERRRNA-GLVWSFVGGSFAGLCQAVVIIPTDIIKIKLQIQVGAPGSSNL------LYRGPVDCAMKIFKT 277
            Q+ ++ R  N   L   F+ GS AGL Q+V+  P ++ K ++QIQ    G+S        LY+GPVDC  KI+KT
Sbjct:   80 QRNVQRRMENPQSLTSHFIAGSVAGLAQSVICSPMELAKTRMQIQ--GQGASRKKYRQVSLYKGPVDCLCKIYKT 152          
BLAST of mRNA_E_fasciculatus_S2_contig7501.15667.1 vs.
Match: Solute (carrier family 25 member 45 n=3 Tax=Esox lucius TaxID=8010 RepID=A0A3P9A881_ESOLU)

HSP 1 Score: 51.6 bits (122), Expect = 1.380e-5
Identity = 21/51 (41.18%), Postives = 30/51 (58.82%), Query Frame = 2
Query:  122 FVGGSFAGLCQAVVIIPTDIIKIKLQIQVGAPGSSNLLYRGPVDCAMKIFK 274
            F  G F+GL Q  ++ P D++K++LQ Q+G PG     YRGP  C   I +
Sbjct:  104 FAAGCFSGLVQVALMAPVDLVKVRLQSQMGRPGIGGDQYRGPAHCVTLILR 154          
BLAST of mRNA_E_fasciculatus_S2_contig7501.15667.1 vs.
Match: mitochondrial (carnitine/acylcarnitine carrier protein-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A87D4)

HSP 1 Score: 51.2 bits (121), Expect = 1.920e-5
Identity = 28/77 (36.36%), Postives = 41/77 (53.25%), Query Frame = 2
Query:   47 GGGVSMSMEQQQLEERRRNAGLVWSFVGGSFAGLCQAVVIIPTDIIKIKLQIQVGAPGSSNLLYRGPVDCAMKIFKT 277
            G GV   + +    ++     L   FV G  AG+   V++ P + IK  LQIQ    GS  + Y+GPVDCA K+++T
Sbjct:   88 GFGVGKDLVRSVTGDQSEKLSLSKLFVSGGVAGVLTTVIMAPGERIKCLLQIQ---QGSGEIKYKGPVDCAKKLYQT 161          
BLAST of mRNA_E_fasciculatus_S2_contig7501.15667.1 vs.
Match: Mitochondrial (2-oxodicarboxylate carrier 2 n=2 Tax=Candida glabrata TaxID=5478 RepID=A0A0W0CEP4_CANGB)

HSP 1 Score: 51.2 bits (121), Expect = 1.930e-5
Identity = 20/54 (37.04%), Postives = 36/54 (66.67%), Query Frame = 2
Query:  113 VWSFVGGSFAGLCQAVVIIPTDIIKIKLQIQVGAPGSSNLLYRGPVDCAMKIFK 274
            ++ FV G+ AG+ + +V+ P D++K ++Q+QVG+   S + Y G +DC  +I K
Sbjct:    9 IYQFVSGAAAGVSELLVMYPLDVVKTRMQLQVGSGTGSGVAYNGVIDCLGQIVK 62          
BLAST of mRNA_E_fasciculatus_S2_contig7501.15667.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV79_HETAK)

HSP 1 Score: 51.2 bits (121), Expect = 2.040e-5
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 2
Query:  122 FVGGSFAGLCQAVVIIPTDIIKIKLQIQVG-APGSSNLLYRGPVDCAMKIFK 274
            F+ G  +G  QAV + PT +IK+KLQ+Q G A     ++Y GPVDC +KI +
Sbjct:  163 FLAGVLSGALQAVAMSPTQLIKVKLQVQTGQAARPGQVVYYGPVDCLVKIMQ 214          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7501.15667.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
Uncharacterized1.320e-3285.51protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Mitochondrial8.880e-1154.72carrier domain-containing protein n=1 Tax=Tribonem... [more]
Solute3.030e-848.08carrier family 25 member 45-like protein (Fragment... [more]
Hypothetical6.800e-843.64protein n=1 Tax=Aplanochytrium stocchinoi TaxID=21... [more]
mitochondrial3.080e-750.00basic amino acids transporter-like n=1 Tax=Exaipta... [more]
Uncharacterized5.620e-640.00protein n=1 Tax=Capitella teleta TaxID=283909 RepI... [more]
Solute1.380e-541.18carrier family 25 member 45 n=3 Tax=Esox lucius Ta... [more]
mitochondrial1.920e-536.36carnitine/acylcarnitine carrier protein-like n=1 T... [more]
Mitochondrial1.930e-537.042-oxodicarboxylate carrier 2 n=2 Tax=Candida glabr... [more]
Hypothetical2.040e-546.15protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7501contigE_fasciculatus_S2_contig7501:542..1426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size279
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842412.2372062-CDS-E_fasciculatus_S2_contig7501:541..6211696842412.2372062-CDS-E_fasciculatus_S2_contig7501:541..621Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7501 542..621 -
1696842412.2486799-CDS-E_fasciculatus_S2_contig7501:1227..14261696842412.2486799-CDS-E_fasciculatus_S2_contig7501:1227..1426Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7501 1228..1426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7501.15667.1prot_E_fasciculatus_S2_contig7501.15667.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7501 542..1426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7501.15667.1

>prot_E_fasciculatus_S2_contig7501.15667.1 ID=prot_E_fasciculatus_S2_contig7501.15667.1|Name=mRNA_E_fasciculatus_S2_contig7501.15667.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=93bp
QQRSGEGRRWYRSTSRGGRVDVYGAAAAGREEEKRRAGVELRGRVLRGTV
PGGGHHPHRHHQDQAPDPGRRARVEQPPVPGPRGLRDEDLQDA
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mRNA from alignment at E_fasciculatus_S2_contig7501:542..1426-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7501.15667.1 ID=mRNA_E_fasciculatus_S2_contig7501.15667.1|Name=mRNA_E_fasciculatus_S2_contig7501.15667.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=885bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7501:542..1426- (Ectocarpus fasciculatus EfasUO2)
CAGCAACGATCAGGGGAGGGGCGACGGTGGTATCGCAGCACCAGTAGGGG GGGGCGTGTCGATGTCTATGGAGCAGCAGCAGCTGGAAGAGAGGAGGAGA AACGCCGGGCTGGTGTGGAGCTTCGTGGGCGGGTCCTTCGCGGGACTGTG CCAGGCGGTGGTCATCATCCCCACCGACATCATCAAGATCAAGCTCCAGG TGTGTGTGTGTGTGTGTGTGTGTTTCATTCGTTGGCATGGGTCGCGCTAT TCCGCTGCCCAATGAAATTATGTCGGTCTCAGTGTGTACTCGTGTGTATC TTGTTAGTTAGGATCGATCGCGCCAAGCAACTGACCAATGATTAGCCGTC AGTACGGCGGCAAATAATCAAGTGTGTCTGTGTGTGACATGTTGTGTTTT GGGGCCCTAGTACGCCGGCGGAACTATTTTTCCCACAATTAAGTCGACAT GCATGTCTAGAGGGGGTCTGTATGTGCCTTGCGAAGGCATGCATGGGAAG TTGTATCTCCTGTGAAATACACCGTCGTCAAGTCATTCAGGTGTAGGTAG TCTTTACAGGAGAATAAAAACAGCACCATCTTGCTACGGATGCGTCATGA CGGGTGCCACGCAAGAGGTGCCCCGAAAGAGGTATAGGTGCCTCTTCTTA CGAGTGCTAGCTGACGGTGCCCCAGTGCGAAGTCGTGGATAGAACAAAAC AAAGTAGACATCGATACCCCCCCCCTTCCCCCCCCTGGTCCAACGATTAC GGCACTACGTTTCATGAGTACCCCCCCTCTCCTCGCGGGCCCCCCTAACA CACAGATCCAGGTCGGCGCGCCCGGGTCGAGCAACCTCCTGTACCGGGGC CCCGTGGACTGCGCGATGAAGATCTTCAAGACGCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7501:542..1426-

>mRNA_E_fasciculatus_S2_contig7501.15667.1 ID=mRNA_E_fasciculatus_S2_contig7501.15667.1|Name=mRNA_E_fasciculatus_S2_contig7501.15667.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=279bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7501:542..1426- (Ectocarpus fasciculatus EfasUO2)
CAGCAACGATCAGGGGAGGGGCGACGGTGGTATCGCAGCACCAGTAGGGG
GGGGCGTGTCGATGTCTATGGAGCAGCAGCAGCTGGAAGAGAGGAGGAGA
AACGCCGGGCTGGTGTGGAGCTTCGTGGGCGGGTCCTTCGCGGGACTGTG
CCAGGCGGTGGTCATCATCCCCACCGACATCATCAAGATCAAGCTCCAGA
TCCAGGTCGGCGCGCCCGGGTCGAGCAACCTCCTGTACCGGGGCCCCGTG
GACTGCGCGATGAAGATCTTCAAGACGCA
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