mRNA_E_fasciculatus_S2_contig750.15666.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig750.15666.1
Unique NamemRNA_E_fasciculatus_S2_contig750.15666.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig750.15666.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX0_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 1.080e-104
Identity = 233/349 (66.76%), Postives = 246/349 (70.49%), Query Frame = 1 
Query:   55 MLTASVWACLAPEPAAXXXXXXXXXXXXX-YHEGSASDAYVGGRKL-RVSEGAGRAPAGAGE-REAAAPPEPRVVVVSGVAGEGRRLRRXXRAAEREHVGRADPSGQAGQEDASRSERQERGGHAAGTRSPPPEAWSTALAGDAAXXXXXXXXXXXXXXXXXXXRELLRAGGASRGPAATINNGGDSAQTGPHGSGVPEGEGREGWPRRRTQSQRDEALDDAEEWSEEQXXXXXXEDSFGSSG-LLALLVCFGLLFCVMEVAKCYFLLECRRRQRWRHRRTPAG-TRQMPIASSRVVAPEPPDDGTKDEWVEVVVDGVWMSGDVPGGEGLPSATGYAVAGASHALHDAV 1086
            MLTASVWA LAPEPAA  XXXXXXXXXX  YH+G A DA+  GR++ R SEGAGRAPAG G  REAAAPPE RVV  +G  GEGR LRR  +A+ER  VGRAD SGQA + + S  ERQERGGHAAGTR PP E  STALA DAA                     LLR GGA    AAT                V EG GREG  RRRTQS++DE   DAEEW EE+XXXXXX         LLALL CFGL FCVMEVAKCYFL ECRRRQRWR RR   G TRQMPIASSRVVAPEPPDDG KDEWVEVVVDGVWMSGDVPGGEGLPSATGYAVAGASHALHDA+
Sbjct:    1 MLTASVWAGLAPEPAATAXXXXXXXXXXKGYHKGRAIDAFARGREIMRGSEGAGRAPAGVGAGREAAAPPEARVVGGAGDGGEGRMLRRRRQASERGDVGRADLSGQAERGEPSLWERQERGGHAAGTRLPPSEG-STALADDAARRRGDSRVEGRHPAPPTNLG-LLRTGGA----AATFE--------------VTEGPGREGLTRRRTQSRKDEGSGDAEEWPEEEXXXXXXXXXXXXXXXLLALLGCFGLFFCVMEVAKCYFLFECRRRQRWRQRRGATGDTRQMPIASSRVVAPEPPDDGMKDEWVEVVVDGVWMSGDVPGGEGLPSATGYAVAGASHALHDAI 329
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BLAST of mRNA_E_fasciculatus_S2_contig750.15666.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH97_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 1.070e-81
Identity = 197/350 (56.29%), Postives = 211/350 (60.29%), Query Frame = 1 
Query:   55 MLTASVWACLAPEPA-AXXXXXXXXXXXXXYHEGSASDAYVGGRKL-RVSEGAGRAPAGAGEREAAAPPEPRVVVVSGVAGEGRRLRRXXRAAEREHVGRADPSGQAGQEDASRSERQERGGHAAGTRSPPPEAWSTALAGDAAXXXXXXXXXXXXXXXXXXXRELLRAGGAS---RGPAATINNGGDSAQTGPHGSGVPEGEGREGWPRRRTQSQRDEALDDAEEWSEEQXXXXXX-EDSFGSSGLLALLVCFGLLFCVMEVAKCYFLLECRRRQRWRHRRTPAGTRQMPIASSRVVAPEPPDDGTKDEWVEVVVDGVWMSGDVPGGEGLPSATGYAVAGASHALHDAV 1086
            ML+ASVWA LAPEPA A             +H+GSA D Y  G K+ R SEGAGRAPAG              VV + V GEGR LRRX R++ER  VGRAD SGQA QE+AS SERQ RGGHAAG+R PP E  STALA DAA                       R G +S   R PA   N G       P G      EGREGWPRRRTQS+RD    DAEEW EE+XXX    +D FGSSGLLALLVCFGLLFCVME                        TRQMPIASSRVV P P  D TKD WVEVVVDGVWMSGDVPGGEGLPSATGYAVAGASHALHDA+
Sbjct:    1 MLSASVWAGLAPEPAVATAAAGRAGGRGKGHHKGSAMDTYARGPKMVRGSEGAGRAPAGXXXXXXXXXXXXXXVVGAWVGGEGRMLRRXRRSSERGDVGRADLSGQAEQEEASLSERQGRGGHAAGSRLPPSEG-STALANDAAR----------------------RRGDSSVEGRHPAPPTNLG-----LLPTGGAAVTFEGREGWPRRRTQSRRDSG--DAEEWPEEEXXXGDENDDGFGSSGLLALLVCFGLLFCVME----------------------GDTRQMPIASSRVVVPVPQGDRTKDGWVEVVVDGVWMSGDVPGGEGLPSATGYAVAGASHALHDAI 298
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig750.15666.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.080e-10466.76protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.070e-8156.29protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig750contigE_fasciculatus_S2_contig750:24343..28022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size1086
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001720.1
Cds size1086
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842412.1376882-CDS-E_fasciculatus_S2_contig750:24342..249751696842412.1376882-CDS-E_fasciculatus_S2_contig750:24342..24975Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig750 24343..24975 +
1696842412.1504366-CDS-E_fasciculatus_S2_contig750:25367..255571696842412.1504366-CDS-E_fasciculatus_S2_contig750:25367..25557Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig750 25368..25557 +
1696842412.168572-CDS-E_fasciculatus_S2_contig750:26347..264271696842412.168572-CDS-E_fasciculatus_S2_contig750:26347..26427Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig750 26348..26427 +
1696842412.1843307-CDS-E_fasciculatus_S2_contig750:27166..272641696842412.1843307-CDS-E_fasciculatus_S2_contig750:27166..27264Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig750 27167..27264 +
1696842412.2036204-CDS-E_fasciculatus_S2_contig750:27937..280221696842412.2036204-CDS-E_fasciculatus_S2_contig750:27937..28022Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig750 27938..28022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig750.15666.1prot_E_fasciculatus_S2_contig750.15666.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig750 24343..28022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig750.15666.1

>prot_E_fasciculatus_S2_contig750.15666.1 ID=prot_E_fasciculatus_S2_contig750.15666.1|Name=mRNA_E_fasciculatus_S2_contig750.15666.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=362bp
MVAHGKNAGRRRRVWQAAMLTASVWACLAPEPAAAAAAGRGGGRGKGYHE
GSASDAYVGGRKLRVSEGAGRAPAGAGEREAAAPPEPRVVVVSGVAGEGR
RLRRRRRAAEREHVGRADPSGQAGQEDASRSERQERGGHAAGTRSPPPEA
WSTALAGDAARRRGGRSGEGHHHPAPPASRELLRAGGASRGPAATINNGG
DSAQTGPHGSGVPEGEGREGWPRRRTQSQRDEALDDAEEWSEEQEEYGDD
EDSFGSSGLLALLVCFGLLFCVMEVAKCYFLLECRRRQRWRHRRTPAGTR
QMPIASSRVVAPEPPDDGTKDEWVEVVVDGVWMSGDVPGGEGLPSATGYA
VAGASHALHDAV
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mRNA from alignment at E_fasciculatus_S2_contig750:24343..28022+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig750.15666.1 ID=mRNA_E_fasciculatus_S2_contig750.15666.1|Name=mRNA_E_fasciculatus_S2_contig750.15666.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3680bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig750:24343..28022+ (Ectocarpus fasciculatus EfasUO2)
ATGGTTGCCCACGGCAAAAACGCAGGACGGAGGCGCAGGGTGTGGCAGGC
GGCGATGCTCACGGCGTCAGTGTGGGCTTGCCTTGCGCCTGAACCGGCGG
CGGCGGCGGCGGCGGGGCGAGGAGGGGGGCGCGGAAAGGGTTACCACGAG
GGAAGCGCGAGCGACGCGTACGTGGGGGGGCGGAAGTTGAGAGTCTCGGA
GGGAGCCGGACGAGCACCCGCAGGAGCAGGGGAGAGGGAAGCAGCAGCGC
CGCCAGAGCCCAGAGTTGTTGTTGTTTCTGGGGTTGCAGGCGAGGGCCGG
AGGTTGAGAAGGAGGCGGCGGGCGGCGGAGAGGGAACATGTCGGCCGAGC
CGACCCCTCGGGGCAAGCGGGACAGGAAGACGCGTCTCGGTCGGAGCGGC
AGGAGCGAGGAGGACATGCCGCCGGTACCCGCTCCCCCCCACCGGAGGCA
TGGTCGACGGCTCTCGCCGGGGATGCAGCAAGGCGCCGGGGTGGCAGAAG
CGGTGAGGGTCATCATCATCCCGCGCCACCAGCGAGCCGTGAGTTGTTGC
GAGCCGGAGGAGCCTCCCGCGGCCCGGCGGCCACGATCAACAACGGGGGT
GATTCTGCACAAACTGGGCCACATGGTAGCGGCGTTCTGACGATGGTTTT
CGCAGAGGACGCGGAAGCGGCGGGAGCGGCGGGGGCCCCGCCGACTGCCG
CGGGAAGGCGAGACAACGGGGTACTGCTGTGGCTCCCCGCGGCGGCGGCG
GCAACGCTCGAGGTAAGCGGGGCTCCGCCGAATGCAGGGGCGGTGGTGGC
AGACCGGGGGGTTCTATCTACGATTCGCCCCCTCCCAAGGTCTCGAACAG
AGGTGGCAGTAGTAGCAGCACAGAGGGCCGGGAGGAACCGCCTTTGCGAG
AAACTAGGTTTTTGAGGAAATAGAACAGGGGGGGAGTACGGAGACCCTAT
CCCTAACGCTATCCCAACTTCCCCGATTGCATGCCTTCTCCAACATGTGT
ACTTGATACGGAAAACTGTGCGAAGGTTCCCGAGGGGGAGGGCCGGGAGG
GGTGGCCCCGCCGAAGAACCCAGAGCCAAAGAGACGAGGCTCTGGACGAT
GCCGAAGAGTGGTCGGAGGAGCAGGAAGAATACGGCGACGACGAGGATAG
CTTCGGGTCGTCCGGGCTGCTGGCTCTCCTGGTGTGCTTTGGCCTGCTCT
TCTGCGTCATGGAAGGTGCGTTTTTTTTGGGTGGGGAGTGCGGCGTGTCT
CCCTACAGGCACGCCACCGGTGGTGTTTGCTTTTGAGATTTGGTGATGTG
AGTCGAATGCGGCCTCTGCTTTTTTATTTATCTTCGTATGCATGGCCGCG
CATAGATACATATGCAGTGGGGGGGGGGGCTCAGCAGTGCGGGTATGGAC
CAGACCAGTATACCGACACTACTCAAGGCACTGAATATCTTGGTGCTTCA
GTCGCCCGCGGCACTATACCGGACGTCGGCACTGTTCAGCCGGCACTGCT
GAGGGCCCTTGTATGTATACGTGCATTATTGGGTGGGTGGGTGTTGTCGG
CGGTGGTGTGTGTTGAAGTGGGTGTGATGTGTTGTGCGGGGCGGCAGCGG
AAGAACATCGTCGGCGGATCGCCTTGTTTTTGAATGTCTTCGTATCGGCT
AGAGCGGGGCTAGGATTGCCTGCCCAAACGTCGAAACATATCGCACGTTT
CCTCGTTTTATCTCGGGACAAGCTGGGGTCCTTGTGCCCGGTTACGAAAG
GCTGTTACGAAAAGGGACAAAAGAATAAAAATCCAACACACGCTTGTCGT
TTCTCTCGGAGAAGCTGGTGAAATTCACGAAAGACTGTCACGAAAGGGGC
CGAAAGGTATTCACGATGTATCTCAGGCGAGCCGGTGGGTCACTTTATGT
TTTTGCCAAACTACGCAGCCGCTAAGCGTGAGGAAGGCGCCAACTGACTT
GCCCCCTCGATCTTGGATGCCCTATGTTATTGTATTGATGATGTCATTTG
TCCAGTGGCGAAGTGTTACTTTCTGTTGGAGTGCCGGCGTCGGCAGCGGT
GGCGCCACCGGAGAACGCCAGCGGGTACCCGCCAGGTGAGGATAGACACT
GAAGAGAGGCAAACGGGCACTGACTTGAGTACAAGACCTCGATGCCGATG
GTGTCGTGAGAGACGCGTAGCAACGGCGCGCATACGGCATAATCTTCCCA
TTTGCGTGTAGGCCTGCTCCTTCAATTTTGTTAGGGCCTACGTTACAGAT
GTCGGCCTACGCCATTCCTCCCCGTCCTGGCAACTCTGGTCTCCCTACCC
CACATAGCTGCGGTGGTATTTTTCGTTGCCCTTTTTTTTCTTTTCTTTTC
ACATCAAATCGGCGCGCTCACAACATTTCTGCCGTTGAGTCCAACCCGTG
GTCGCACAGAAGGGTGCCGTTCCTCTCCTCTCCCTGAGGCCCCCTACTCA
CCCCTCCGGCAGTGCTTTGCCTTCGCTTTGCCTCGATTTTTATTGCAGAG
AACGAGTGCAGATTTTTAGTGCCGAGAAGAGTGCAGCACTCTCTTATCTT
ATCTTATCTTATCGTATCTTATCTTATCATATCTTATCTTCCCTCTGTCC
TATGCTATACATCAAGACTGCTGCTTTGGTCTGTCCAGCATAACACCGTG
TTCGTCGTCATAACACAAAGTGCTTGCATTCATGTCTGATCTCCCCCCCT
CCCCCCTCCGCTGCAACCGCGCCCCCTCCACCCTTGACTTGACATGTCGC
CCAACGGCGATACCACCCGACTGCCGCAACTTGCGCATAAACTCCACCGC
CGCAACGCCGCCGCCGCGGCCCAGATGCCCATCGCCTCCAGCCGAGTGGT
CGCCCCGGAGCCCCCAGATGACGGAACAAAAGACGAGTGGGTGGAGGTCG
TCGTGGACGGCGTCTGGATGAGGTGAGAGTCACGCTGTTGAGGTTTGTTG
GGTTCAGGGGGGGGGTCGATCGTGTGGTTCGTGGTCCGCTACACGCAAGT
AATTTCTCCCCTCCTCATTTTTTTTGCTTTTCTGTGTTGTGAGCACGTAC
GTGCCTTGCAACATCCTGTCTCTGATTGCGAAATTGAAGGTTCGAAGGAA
TCCACTCCTCGCTTTCCTCCGTTTGCCATCCCAAAACACGGACAGCTTCT
TTGGCGCCAACATAACAAGGCACGGCGTGTGCCTGCCGGGCAGCAATCCT
TGACCCATGCAGAATCGAGCTGGCGCTAGCACCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCTCGCCTACTCGTGCCCTTTCGTTCTCGCCCT
CTTCTCTCCTCCCTTTCTTTCTCTTTCTCTTTTTTTTTTTTTNNNNNNNN
NNACGGACCGCTTCTTTGGCCCCAACATACAAAGGCACGGGGTGGGTCTT
CCGGGGAGCAACCCTTGACCCACGCAGAATCGGGGGGGCGAGAGCCCCCC
CCCCCCCCCCCCTCTATCCTGCGCTCTTCCAATGCATGTACGTGTGCCCT
GTGTCTCGCCGACTTGTCGCCACTAACTTTCGTCCTTTCCTGATTGGCTG
TGTTTTTCGGTATTTCTCCGCTCTGTTGTTTACCACGCGTGTCAGCGGCG
ACGTGCCGGGAGGTGAGGGCTTGCCGTCGGCTACGGGCTACGCCGTCGCG
GGAGCGTCTCACGCTCTCCATGATGCGGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig750:24343..28022+

>mRNA_E_fasciculatus_S2_contig750.15666.1 ID=mRNA_E_fasciculatus_S2_contig750.15666.1|Name=mRNA_E_fasciculatus_S2_contig750.15666.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1086bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig750:24343..28022+ (Ectocarpus fasciculatus EfasUO2)
ATGGTTGCCCACGGCAAAAACGCAGGACGGAGGCGCAGGGTGTGGCAGGC
GGCGATGCTCACGGCGTCAGTGTGGGCTTGCCTTGCGCCTGAACCGGCGG
CGGCGGCGGCGGCGGGGCGAGGAGGGGGGCGCGGAAAGGGTTACCACGAG
GGAAGCGCGAGCGACGCGTACGTGGGGGGGCGGAAGTTGAGAGTCTCGGA
GGGAGCCGGACGAGCACCCGCAGGAGCAGGGGAGAGGGAAGCAGCAGCGC
CGCCAGAGCCCAGAGTTGTTGTTGTTTCTGGGGTTGCAGGCGAGGGCCGG
AGGTTGAGAAGGAGGCGGCGGGCGGCGGAGAGGGAACATGTCGGCCGAGC
CGACCCCTCGGGGCAAGCGGGACAGGAAGACGCGTCTCGGTCGGAGCGGC
AGGAGCGAGGAGGACATGCCGCCGGTACCCGCTCCCCCCCACCGGAGGCA
TGGTCGACGGCTCTCGCCGGGGATGCAGCAAGGCGCCGGGGTGGCAGAAG
CGGTGAGGGTCATCATCATCCCGCGCCACCAGCGAGCCGTGAGTTGTTGC
GAGCCGGAGGAGCCTCCCGCGGCCCGGCGGCCACGATCAACAACGGGGGT
GATTCTGCACAAACTGGGCCACATGGTAGCGGCGTTCCCGAGGGGGAGGG
CCGGGAGGGGTGGCCCCGCCGAAGAACCCAGAGCCAAAGAGACGAGGCTC
TGGACGATGCCGAAGAGTGGTCGGAGGAGCAGGAAGAATACGGCGACGAC
GAGGATAGCTTCGGGTCGTCCGGGCTGCTGGCTCTCCTGGTGTGCTTTGG
CCTGCTCTTCTGCGTCATGGAAGTGGCGAAGTGTTACTTTCTGTTGGAGT
GCCGGCGTCGGCAGCGGTGGCGCCACCGGAGAACGCCAGCGGGTACCCGC
CAGATGCCCATCGCCTCCAGCCGAGTGGTCGCCCCGGAGCCCCCAGATGA
CGGAACAAAAGACGAGTGGGTGGAGGTCGTCGTGGACGGCGTCTGGATGA
GCGGCGACGTGCCGGGAGGTGAGGGCTTGCCGTCGGCTACGGGCTACGCC
GTCGCGGGAGCGTCTCACGCTCTCCATGATGCGGTG
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