mRNA_E_fasciculatus_S2_contig75.15662.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig75.15662.1
Unique NamemRNA_E_fasciculatus_S2_contig75.15662.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig75.15662.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig75contigE_fasciculatus_S2_contig75:26412..28825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1655
Hectar predicted targeting categoryother localisation
Exons3
Cds size1053
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842411.6632721-UTR-E_fasciculatus_S2_contig75:26411..269111696842411.6632721-UTR-E_fasciculatus_S2_contig75:26411..26911Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig75 26412..26911 -
1696842411.7155201-UTR-E_fasciculatus_S2_contig75:28723..288251696842411.7155201-UTR-E_fasciculatus_S2_contig75:28723..28825Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig75 28724..28825 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842411.67433-CDS-E_fasciculatus_S2_contig75:26911..275441696842411.67433-CDS-E_fasciculatus_S2_contig75:26911..27544Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig75 26912..27544 -
1696842411.6923525-CDS-E_fasciculatus_S2_contig75:27856..281381696842411.6923525-CDS-E_fasciculatus_S2_contig75:27856..28138Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig75 27857..28138 -
1696842411.706615-CDS-E_fasciculatus_S2_contig75:28585..287231696842411.706615-CDS-E_fasciculatus_S2_contig75:28585..28723Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig75 28586..28723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig75.15662.1prot_E_fasciculatus_S2_contig75.15662.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig75 26912..28723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig75.15662.1

>prot_E_fasciculatus_S2_contig75.15662.1 ID=prot_E_fasciculatus_S2_contig75.15662.1|Name=mRNA_E_fasciculatus_S2_contig75.15662.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=351bp
MNELAQAVAELGVDLWLDGQCLSAQVKDVASKTRAEQLLRHKLTSKYPDL
LESATTVADAPGPTAVTGDGAGPPSPPLSEDRARGGSGGDDWNSGVEAGL
KLAQAPAAAPATLHSGCVAPAATTASASRRIGGEGVTLGQGEQSSRPTVG
AAATPAAVKVGALTTPVTGLGPSRRGPGACSAATATRRASDAGGGGGDGD
SCGASSSLSSNSGTASGPPANAVDTEGFRSVGTARVPSLTNAGNSEALTP
AGAGQHTLAPSSAAFPARTSGAAAASTTAASAAHATGDGEATAAEYGDSG
RAAAAAGASAAAAVLSDATDASHPVTLASGSSSPDGRRSTRWLARSVPDC
*
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mRNA from alignment at E_fasciculatus_S2_contig75:26412..28825-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig75.15662.1 ID=mRNA_E_fasciculatus_S2_contig75.15662.1|Name=mRNA_E_fasciculatus_S2_contig75.15662.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2414bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig75:26412..28825- (Ectocarpus fasciculatus EfasUO2)
GTTCGGGTACCACTGCACGCTTCCGTTGGCCTAAGGTGCAATTTCAAGAC
AGGCCACTCGAAGAACCGCGACGCGAAACGCTGTTTCTTCCGGCAAGGGT
TCATGAACGAACTGGCACAGGCCGTGGCCGAGTTGGGGGTGGACTTGTGG
CTCGACGGCCAATGTTTATCTGCACAAGTCAAAGACGTTGCTTCGAAGAC
GCGTGCTGAACAACTTCTTCGACACAAGCTCACTTCCAAGGTACGTACTC
TTAGAAGACCTCGGTGACGTCATGGAAACGCAAAAACGTTATGGAGCGTC
GAACGGGAGGCCTCAGGAGAGAGAGGATACAGGTTTCAGTCCTGGCTTGT
GCCGTCCCGCGTGCTCTGGAAGTCTATGTTGTGTTATCTCTGCGGTTGAC
GAGTCTCGAGCAGTGTGCACATCGCGTAGTTTCCCATGCAATTCATGCCC
CGGTAGGAATGGCCTCCGGCACCACGTTTGCGTTGGACCCTTGGCATCAC
TTACGTTTATGGTTGGCAGGGGTGACACATGCAACAATGTCAAATGCGTG
CAGACGTTGCAGGGCCGCGAATGATTCTGACGCCAGCTCCTTCCCTGCAC
CGCAACGCCTTCGGTATCGGCAATCGCGTGTAAACTATCGCATCCACAAC
GCCACTGCTCAACGAATACCTGGGGATACCGTCGCAGTATCCAGACCTTC
TGGAGAGCGCTACGACCGTTGCCGACGCGCCTGGCCCTACAGCGGTGACC
GGCGATGGGGCCGGACCTCCTTCTCCCCCCCTGTCAGAGGATCGAGCGCG
CGGCGGCAGCGGCGGGGATGATTGGAACAGTGGAGTTGAGGCGGGCTTGA
AGCTAGCCCAGGCTCCTGCTGCCGCTCCTGCCACATTGCACAGTGGTTGC
GTTGCTCCAGCTGCTACCACAGCTTCGGCTTCACGGCGTATAGGCGGAGA
GGGTGTGACGTTGGGTCAGGTACGTAAGGGTAGCCTTCGGGAAAAGCCTA
ACGGAAAACGTTGATGCATCGTGTCTGCCCTCCTGCCTTCGTGGAACCAA
GCGAAAGGATGGTGGTGTCAGTATCCCACCCGTTAGGCATACACGTGTTG
TGATTGTCAGTATCACGGTGGTAATTCTCTTCCGGGTTTGGCTCTGGTGA
GCTGGTAAGGGGTTCGTGTGCCGTGTTGTGACTCGGACGGCTACGCAGAA
ACGATGGTTGCCTTTTGTCAAGGTGGGTGTTTGACGGAATCTGCCCACGA
CCAATGTCACGTTTGTCGGTGAATTGTTTAGGGAGAGCAATCTTCGCGGC
CCACCGTCGGGGCAGCGGCGACGCCGGCGGCGGTGAAGGTGGGAGCGTTG
ACGACGCCTGTGACGGGGCTAGGACCTTCGAGACGCGGGCCCGGAGCTTG
TTCAGCCGCTACCGCTACTCGACGTGCTAGCGACGCTGGTGGTGGCGGTG
GCGATGGGGACAGTTGTGGTGCTTCTTCGTCTTTGTCGTCGAATTCCGGG
ACAGCCTCCGGTCCGCCAGCAAATGCAGTGGACACGGAGGGGTTCCGCAG
CGTGGGAACGGCACGGGTTCCCTCCCTCACCAATGCAGGTAACTCTGAAG
CTCTGACTCCGGCGGGAGCGGGGCAGCACACGTTGGCGCCGTCATCGGCA
GCGTTTCCGGCAAGGACAAGCGGGGCGGCTGCCGCCTCTACCACTGCTGC
TAGTGCCGCACATGCTACAGGTGACGGTGAGGCTACTGCTGCTGAATATG
GGGACAGCGGACGAGCTGCTGCTGCTGCTGGTGCTTCTGCTGCTGCTGCT
GTTCTCTCCGACGCTACCGACGCCTCTCACCCGGTGACCTTGGCTTCTGG
TTCTTCGTCGCCGGACGGCAGGAGATCGACACGGTGGCTGGCCCGGAGCG
TGCCGGATTGTTGACACAGATACGGCAGCAGGAGTGTGTCGGACACGGTG
ATCGGGACAATGACGAGGAGGAGCAAGGGCAGGGGCTCATGATGCCCTTT
GCTGGGTGGGGATGATGAAGAGGGAGGAGAAACCTCGACATCTGTCAACA
TGCCATGAGTAGCTCACAGGAAGGTGGGGGATGACCCCGACAGGTTCATA
TTCGGGGTGGGAAGGTACCTCATACTCCTGGTACGCGAGCGCAGGCGAGG
GTAGGTACCCGCTGGTACACGGGCCACCCCTCGTTGCGTGTGCGTGCCAC
GCTGGGTGCACTTGTGCGTGGTGCGTGCATGCAGGGGAAGCAGCTCTTTA
CCGTATACAGGGGCTCGATCGACTTTGAGAAATTGAAAGCAAGATTGCCA
TTCTTGGTGGACATTTCAAGGCGATCAAACAACGTGTCAATGCGTGCGAC
TGCCGCACCAAGAGGCAATGGGAGGTCATGCAGTTGACGTGGGGGCGGGG
TGAATGGCTTAGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig75:26412..28825-

>mRNA_E_fasciculatus_S2_contig75.15662.1 ID=mRNA_E_fasciculatus_S2_contig75.15662.1|Name=mRNA_E_fasciculatus_S2_contig75.15662.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1053bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig75:26412..28825- (Ectocarpus fasciculatus EfasUO2)
ATGAACGAACTGGCACAGGCCGTGGCCGAGTTGGGGGTGGACTTGTGGCT
CGACGGCCAATGTTTATCTGCACAAGTCAAAGACGTTGCTTCGAAGACGC
GTGCTGAACAACTTCTTCGACACAAGCTCACTTCCAAGTATCCAGACCTT
CTGGAGAGCGCTACGACCGTTGCCGACGCGCCTGGCCCTACAGCGGTGAC
CGGCGATGGGGCCGGACCTCCTTCTCCCCCCCTGTCAGAGGATCGAGCGC
GCGGCGGCAGCGGCGGGGATGATTGGAACAGTGGAGTTGAGGCGGGCTTG
AAGCTAGCCCAGGCTCCTGCTGCCGCTCCTGCCACATTGCACAGTGGTTG
CGTTGCTCCAGCTGCTACCACAGCTTCGGCTTCACGGCGTATAGGCGGAG
AGGGTGTGACGTTGGGTCAGGGAGAGCAATCTTCGCGGCCCACCGTCGGG
GCAGCGGCGACGCCGGCGGCGGTGAAGGTGGGAGCGTTGACGACGCCTGT
GACGGGGCTAGGACCTTCGAGACGCGGGCCCGGAGCTTGTTCAGCCGCTA
CCGCTACTCGACGTGCTAGCGACGCTGGTGGTGGCGGTGGCGATGGGGAC
AGTTGTGGTGCTTCTTCGTCTTTGTCGTCGAATTCCGGGACAGCCTCCGG
TCCGCCAGCAAATGCAGTGGACACGGAGGGGTTCCGCAGCGTGGGAACGG
CACGGGTTCCCTCCCTCACCAATGCAGGTAACTCTGAAGCTCTGACTCCG
GCGGGAGCGGGGCAGCACACGTTGGCGCCGTCATCGGCAGCGTTTCCGGC
AAGGACAAGCGGGGCGGCTGCCGCCTCTACCACTGCTGCTAGTGCCGCAC
ATGCTACAGGTGACGGTGAGGCTACTGCTGCTGAATATGGGGACAGCGGA
CGAGCTGCTGCTGCTGCTGGTGCTTCTGCTGCTGCTGCTGTTCTCTCCGA
CGCTACCGACGCCTCTCACCCGGTGACCTTGGCTTCTGGTTCTTCGTCGC
CGGACGGCAGGAGATCGACACGGTGGCTGGCCCGGAGCGTGCCGGATTGT
TGA
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