mRNA_E_fasciculatus_S2_contig7497.15659.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7497.15659.1
Unique NamemRNA_E_fasciculatus_S2_contig7497.15659.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7497.15659.1 vs.
Match: R3H (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ1_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 3.930e-28
Identity = 100/205 (48.78%), Postives = 117/205 (57.07%), Query Frame = 2 
Query:    8 EPAASLGDMEGSLTGRMDQTHKGVAGTAAGIARLRGQDQEITRRVSNFEAEVPGKADGFDEPRSPSATSRRGSYDPDTV-SVASSTAIPPKTLMTSPQERRKSWAIHVWCCTRSVASHQKGGPRWTPRPTFGLSRNTLSSASSLSAAPMPALGGSADGCTKASGNGGGXXXNVGGADLVRIGTAVRVRRTVQDTEEESRKRCRRC 619
            EPAASLG   GSL G MDQTHK VAGTAA     R QDQ I +RVSNFEAEV  K   F    +P A S    +   ++ S+  S A     + T  +       + ++         +    +   +   GL+RNTLSSASS SAAPMPALGGSA G          XXX+VG ADLVRIGT V+ RRTVQD EEESRKR RRC
Sbjct:  206 EPAASLGGFLGSLMGSMDQTHKSVAGTAAVDRANRAQDQAIKQRVSNFEAEVREKIAVFST--NPEAISHTFPHVEKSLRSIQHSLAEDFDGITTRTEGELDDRRVVLYKLGYEPPEEEV---QVDTQVHLGLARNTLSSASSASAAPMPALGGSAGGXXXXX-----XXXDVGSADLVRIGTVVKDRRTVQDIEEESRKRRRRC 400
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BLAST of mRNA_E_fasciculatus_S2_contig7497.15659.1 vs.
Match: R3H (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2L0_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.580e-15
Identity = 75/171 (43.86%), Postives = 93/171 (54.39%), Query Frame = 2 
Query:  110 RGQDQEITRRVSNFEAEVPGKADGFDEPRSPSATSRRGSYDPDTV-SVASSTAIPPKTLMTSPQERRKSWAIHVWCCTRSVASHQKGGPRWTPRPTFGLSRNTLSSASSLSAAPMPALGGSADGCTKASGNGGGXXXNVGGADLVRIGTAVRVRRTVQDTEEESRKRCRRC 619
            R QDQ I +RVSNFEAEV  K   F    +P A S    +   ++ S+  S A     + T  +       + ++         +    +   +   GL+RNTLSSASS+SAAPMPALGGSA            XXX+VG ADLVRIGT V+ RRTVQD EEESRKR R C
Sbjct:    9 RAQDQAIKQRVSNFEAEVREKIAVFST--NPEAISHTFPHVEKSLRSIQHSLAEDFDGITTRTEGELDDRRVVLYKLGYEPPEEEV---QVDAQVHIGLARNTLSSASSVSAAPMPALGGSAGXXXXXX-----XXXDVGSADLVRIGTVVKDRRTVQDIEEESRKRRRHC 169
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7497.15659.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
R3H3.930e-2848.78domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
R3H2.580e-1543.86domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7497contigE_fasciculatus_S2_contig7497:2272..5714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1288
Hectar predicted targeting categoryother localisation
Exons4
Cds size591
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7497.15659.1prot_E_fasciculatus_S2_contig7497.15659.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7497 2303..5048 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842411.479238-UTR-E_fasciculatus_S2_contig7497:2271..23021696842411.479238-UTR-E_fasciculatus_S2_contig7497:2271..2302Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7497 2272..2302 +
1696842411.5382915-UTR-E_fasciculatus_S2_contig7497:5048..57141696842411.5382915-UTR-E_fasciculatus_S2_contig7497:5048..5714Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7497 5049..5714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842411.4941144-CDS-E_fasciculatus_S2_contig7497:2302..23661696842411.4941144-CDS-E_fasciculatus_S2_contig7497:2302..2366Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7497 2303..2366 +
1696842411.5039-CDS-E_fasciculatus_S2_contig7497:2885..30251696842411.5039-CDS-E_fasciculatus_S2_contig7497:2885..3025Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7497 2886..3025 +
1696842411.513945-CDS-E_fasciculatus_S2_contig7497:3842..39941696842411.513945-CDS-E_fasciculatus_S2_contig7497:3842..3994Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7497 3843..3994 +
1696842411.524259-CDS-E_fasciculatus_S2_contig7497:4813..50481696842411.524259-CDS-E_fasciculatus_S2_contig7497:4813..5048Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7497 4814..5048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7497.15659.1

>prot_E_fasciculatus_S2_contig7497.15659.1 ID=prot_E_fasciculatus_S2_contig7497.15659.1|Name=mRNA_E_fasciculatus_S2_contig7497.15659.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=197bp
MEGSLTGRMDQTHKGVAGTAAGIARLRGQDQEITRRVSNFEAEVPGKADG
FDEPRSPSATSRRGSYDPDTVSVASSTAIPPKTLMTSPQERRKSWAIHVW
CCTRSVASHQKGGPRWTPRPTFGLSRNTLSSASSLSAAPMPALGGSADGC
TKASGNGGGNGGNVGGADLVRIGTAVRVRRTVQDTEEESRKRCRRC*
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mRNA from alignment at E_fasciculatus_S2_contig7497:2272..5714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7497.15659.1 ID=mRNA_E_fasciculatus_S2_contig7497.15659.1|Name=mRNA_E_fasciculatus_S2_contig7497.15659.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3443bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7497:2272..5714+ (Ectocarpus fasciculatus EfasUO2)
AGAAAAGGAACCGGCAGCATCGCTTGGAGATATGGAGGGGTCGTTGACGG
GCCGCATGGACCAGACTCACAAAGGCGTGGCCGGCACGGCAGCGGGTGAG
CACGAGCGGCACATTATGATAGTTTACCATTAGTCTCCAGCTCTCCACTC
GGGCAAGCCCCGGCCGTTCAAATTTTTCTTCGTCGCCTTGAGGTCGAACC
ATTCCCGTGAGGTAGATCACACGGAGGCCGTCGGAGGCCCAGCACCCGAA
ATATGATATTCGTGCGTGCCTACCGAATGCGAAGCGTTTGGCATGCCGGG
GTACCCAACGAAGGCATGAAATGTCTGTTTTGGAACAGCAAGCGCAAGGA
TGATAATCAGCTTACAGGTATCCTTGTGAAACATGGCCTGGGCCAAAGAA
AACCCGGCGTATCGCTCCGCCCCGCATGGAAAGGCGAGAAGCGGTATAGA
TAGGATAGATTGGTTGGCAAAACGTAGGAAGCAACCATTGCGCCCATCGG
TGATCGGTTATGTGCGAACAATGCTCCGACCTCTCGAGGACGTGTGGTCA
ATCTCTAACAAAAATACGTGCAACGCATGACTGCGCCCCCTCCCCTCCCC
GAAAACGAAAGAAGGGATAGCGCGGCTCCGGGGGCAGGATCAGGAAATCA
CGCGTCGCGTTTCGAACTTCGAAGCGGAAGTGCCAGGCAAGGCGGACGGT
TTCGACGAACCCCGAAGTCCTTCCGCCACGTCGAGAAGAGGGTCGTATGA
TCCGGTGAGTCATTTTCAGTGTTTTTCTTCTCGTGTTTTGATTATTGCTT
TCACCTCGCGACTAGAGGTGCGGTCTGTCAAGTTCCCGATGAAAAACCTT
GTCTCTACATGTTTTGTGTCAGAAACATCGAACTGTCCCTGCCTTGCCTA
GAAATCATGGACATGGACTTGGGATGTATTGTAGTGCACGATGGCCCCGT
ACCAAACGGAAAAATTGACGTTGTGAGTTCGGTCAGAGCTACCGAATGAA
ACAATCAGTGAATTATTTGTGAAATTGGCGATCGATGCGGAATGACTACA
ACAATGGACACACGCATTCCAATGCCGGAAGTAGAGGAAGCGTGTACAAT
GGCATGGCAGGGTGCACTACTAAAAGACCCGTGTCAATAGAGCCTGGTCC
GGTGAGAAACCGGCGTGCTCCGATGCGAGGTTAATGGTCCAACGACTACG
GCATGCACGACTACGAGTACCGCCCCCCCCCGTGCCTGACGGACAAGAAG
AATTTCACATATATACTGTCCTTACCGCTATATGCACGCTTCCGTTGGTT
ACCACGTCCACTTCCACCACGCGACATGGCATCAGTGGTGGTTGATCCCG
GCCAAGCTCAAACTATACTGCTATGTTGTTTTTCTTGGGACCAGGACATT
GGCTTGGACTATATTGGGAACACAAGCAGAGAGCAGAGCCGGGATCACGC
ACGGAACGAGCATCACACTAATTTTTTCCAAGGTTGTAGCATTTTTCGCA
ACGATGACAGTTTACCAACAAATGAAAATCAGTGCCTGTTTCACTCTGCT
GACTCTTCGACCTTCTATTAGGACACCGTGTCTGTGGCTTCAAGCACAGC
AATCCCGCCGAAGACTTTGATGACATCACCACAAGAACGGAGGAAGAGTT
GGGCGATACACGTGTGGTGTTGTACAAGGTCGGTGGCGAGCCACCAGAAA
GGAGGCCCCAGATGGACACCCAGGTGCGTACTGACCATCACGACCTTGGA
GTATGAAATGAAATACTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTGTTGCTGTTGTTGTT
GTTGTTGTTGTTAATGTTGTTGTTGTTGTTGTTGTTGTTTTGGTGGTGTG
GTGGTGTCGTCGACTTCGTCATTTATTCTGCGTTCCGCTCCTCCAGTTTC
GTCCGAGTTTCGTCTGAGCCTGTGACAGGACCACAGCCATGCGACCTTTT
GTTTTTTTTTTCGACTTGCAATGCCTCAACCCCCGACAAGGAACAGGGAC
GAGCAGAGACAACGCACTCCTTGATCCAACCGCACGGTGAAAACGCCAAC
AGTGCCCTGACGTTGCCGCTCACGTTGCCGGTGGCTCTGTAGTAGAATAG
GGAGATATCGATATGTCTCGAACGGAGCCCTGGGCCAGTGGTAAAACGCC
TGGAGAACAGGAATAAAAAGCCATCTTGGGGTTTTCGTTGCTCGACAACA
ACGAAGTGAAAGAGCCAGAAAAAACATGAAGTCAATCGCAGCTGCCATCC
GTATGCAAGGTAGTAAGCACAAGATGCCGCACACCCTAAGCAGAATGCAG
GGCACCCTCCGTGCGGCTCGCCGAATGCCTCACGGCGCTTCACGTACGGA
GATGTAGCAACCTGGTCGGGTGAAAATCCTGGCGCCCTCCGTCCCGGCTC
TGTAGAGATGCGAGGTCAATGGCCTAACGACTACTGTACGGCATGCACGG
CTCTGAGTATCCCCCCCCGCCCAAACGCTCATCACAAAACAGGCCCACAT
TTGGTCTGTCGAGAAATACCTTGTCTTCGGCCTCCTCGCTGAGCGCAGCA
CCCATGCCCGCGCTCGGCGGTAGCGCCGACGGCTGCACCAAGGCGAGTGG
GAACGGCGGCGGAAACGGAGGCAACGTCGGCGGTGCTGACTTGGTGCGGA
TCGGGACCGCCGTGAGGGTCCGGCGGACGGTGCAGGACACCGAGGAGGAA
TCGAGAAAACGGTGCCGCCGCTGTTGAATATTTCATGTATTCCTTCTTAT
CTTTTTTCCCATCCATTTGGCGATGTGGGGGGGGCTGGCATGGTACCTCG
GTCGGTGCTTTTCGTGGTGGTTTAGTCAGGGTTAGAAAATGGTACACCGG
TAGATTGCCGCGGTGTTTCTTGGTGGCTCTCGTGATGGGGGTACCGTAAG
CTGCTTTTGACGCGGCTGGGGAACGTTTTTGACGGATTGTACCCTCAGCC
GCGTTTGGTTGCGTGGGAGAAGGGGTAGAAGGGTGGAGTTGTCATAGGGT
CTGGCGAAGGCCAGGTACTCGAAATCGGGCTCTGACATCTGGTGGCATGT
TTTTTTTGTTTGATGTGCCAAGCTGGGACAACAGCCTTGGTTGACTGCTT
CCTTCACCCCGAACTGCGGCTAGGTTGGAGCGGCTGAAAGCCAGAGAACG
TTTTTTGGCTCTGCTTGCTGGTTTCCGTCGCCTTTGCCTTCTTTCGCGAA
GCCGTTGGTATGGTATGGACTAGTTTCACATCGGAGACCTGTCAGTAACA
CCTGGCCGAACGCAGATAGACCAGTTGACCATCAGATGACCAAAGGACGA
CTTGTCTTCCGGTTTTGCTATGCCAGTTGGTTCTTGTTGCCCAGCGCGTT
GCGGAGGAACCATGCCCACAGCCCAAGAAATGATCTTGGTGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7497:2272..5714+

>mRNA_E_fasciculatus_S2_contig7497.15659.1 ID=mRNA_E_fasciculatus_S2_contig7497.15659.1|Name=mRNA_E_fasciculatus_S2_contig7497.15659.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=591bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7497:2272..5714+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGGGGTCGTTGACGGGCCGCATGGACCAGACTCACAAAGGCGTGGC
CGGCACGGCAGCGGGGATAGCGCGGCTCCGGGGGCAGGATCAGGAAATCA
CGCGTCGCGTTTCGAACTTCGAAGCGGAAGTGCCAGGCAAGGCGGACGGT
TTCGACGAACCCCGAAGTCCTTCCGCCACGTCGAGAAGAGGGTCGTATGA
TCCGGACACCGTGTCTGTGGCTTCAAGCACAGCAATCCCGCCGAAGACTT
TGATGACATCACCACAAGAACGGAGGAAGAGTTGGGCGATACACGTGTGG
TGTTGTACAAGGTCGGTGGCGAGCCACCAGAAAGGAGGCCCCAGATGGAC
ACCCAGGCCCACATTTGGTCTGTCGAGAAATACCTTGTCTTCGGCCTCCT
CGCTGAGCGCAGCACCCATGCCCGCGCTCGGCGGTAGCGCCGACGGCTGC
ACCAAGGCGAGTGGGAACGGCGGCGGAAACGGAGGCAACGTCGGCGGTGC
TGACTTGGTGCGGATCGGGACCGCCGTGAGGGTCCGGCGGACGGTGCAGG
ACACCGAGGAGGAATCGAGAAAACGGTGCCGCCGCTGTTGA
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