mRNA_E_fasciculatus_S2_contig7487.15651.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7487.15651.1
Unique NamemRNA_E_fasciculatus_S2_contig7487.15651.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7487.15651.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U7_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 9.650e-47
Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:    1 EPTETAPISVHASAGALASELTSLDSLGINSVQVSRSGPSTEGELAWTVSFVSGTGDIPAMQALNDGVTGTDAAVRVSELANGVAPVRGSVSLVVSGVRGE 303
            EPTET PISVHASAGALASELTSLDSLGINSVQVSRSGPS EGELAWTVSFVSG GD+PAMQA++DGVTGTDA VRV+E+ANGVAPVRGSVSLVVSGVRGE
Sbjct: 2429 EPTETVPISVHASAGALASELTSLDSLGINSVQVSRSGPSAEGELAWTVSFVSGNGDLPAMQAVHDGVTGTDAVVRVAEVANGVAPVRGSVSLVVSGVRGE 2529
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BLAST of mRNA_E_fasciculatus_S2_contig7487.15651.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW5_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 8.470e-46
Identity = 90/101 (89.11%), Postives = 98/101 (97.03%), Query Frame = 1 
Query:    1 EPTETAPISVHASAGALASELTSLDSLGINSVQVSRSGPSTEGELAWTVSFVSGTGDIPAMQALNDGVTGTDAAVRVSELANGVAPVRGSVSLVVSGVRGE 303
            EPTETAPISVHASAGALASEL+SLDSLGINSVQVSRSGPS EGELAWTV+FVSG GD+PAMQA++DGVTGTDA VRV+E+ANGVAPVRGSVSLVVSGV+GE
Sbjct: 2425 EPTETAPISVHASAGALASELSSLDSLGINSVQVSRSGPSAEGELAWTVAFVSGNGDLPAMQAVHDGVTGTDAVVRVAEVANGVAPVRGSVSLVVSGVQGE 2525
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7487.15651.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.650e-4791.09protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.470e-4689.11protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7487contigE_fasciculatus_S2_contig7487:5238..5552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score171.8
Seed ortholog evalue1.7e-40
Seed eggNOG ortholog2880.D7G6U7
Model size315
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs28IVJ@1,2QR77@2759
Cds size315
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842410.5892875-CDS-E_fasciculatus_S2_contig7487:5237..55521696842410.5892875-CDS-E_fasciculatus_S2_contig7487:5237..5552Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7487 5238..5552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7487.15651.1prot_E_fasciculatus_S2_contig7487.15651.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7487 5238..5552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7487.15651.1

>prot_E_fasciculatus_S2_contig7487.15651.1 ID=prot_E_fasciculatus_S2_contig7487.15651.1|Name=mRNA_E_fasciculatus_S2_contig7487.15651.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=105bp
EPTETAPISVHASAGALASELTSLDSLGINSVQVSRSGPSTEGELAWTVS
FVSGTGDIPAMQALNDGVTGTDAAVRVSELANGVAPVRGSVSLVVSGVRG
EVRI*
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mRNA from alignment at E_fasciculatus_S2_contig7487:5238..5552+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7487.15651.1 ID=mRNA_E_fasciculatus_S2_contig7487.15651.1|Name=mRNA_E_fasciculatus_S2_contig7487.15651.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=315bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7487:5238..5552+ (Ectocarpus fasciculatus EfasUO2)
GAACCGACCGAAACCGCCCCAATTTCGGTGCACGCTAGCGCGGGTGCTCT
CGCCTCTGAACTGACCAGTCTGGATAGCCTAGGAATCAACAGCGTTCAGG
TATCGAGGTCCGGCCCGTCCACCGAAGGTGAACTGGCGTGGACAGTGTCG
TTCGTGTCGGGAACCGGAGACATACCGGCAATGCAAGCACTAAATGACGG
CGTTACCGGGACAGACGCGGCGGTGCGCGTTTCGGAGCTAGCCAATGGTG
TGGCTCCTGTTCGAGGGTCCGTTTCGCTTGTGGTGTCCGGGGTGCGAGGG
GAGGTGAGAATATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7487:5238..5552+

>mRNA_E_fasciculatus_S2_contig7487.15651.1 ID=mRNA_E_fasciculatus_S2_contig7487.15651.1|Name=mRNA_E_fasciculatus_S2_contig7487.15651.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=315bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7487:5238..5552+ (Ectocarpus fasciculatus EfasUO2)
GAACCGACCGAAACCGCCCCAATTTCGGTGCACGCTAGCGCGGGTGCTCT
CGCCTCTGAACTGACCAGTCTGGATAGCCTAGGAATCAACAGCGTTCAGG
TATCGAGGTCCGGCCCGTCCACCGAAGGTGAACTGGCGTGGACAGTGTCG
TTCGTGTCGGGAACCGGAGACATACCGGCAATGCAAGCACTAAATGACGG
CGTTACCGGGACAGACGCGGCGGTGCGCGTTTCGGAGCTAGCCAATGGTG
TGGCTCCTGTTCGAGGGTCCGTTTCGCTTGTGGTGTCCGGGGTGCGAGGG
GAGGTGAGAATATGA
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