mRNA_E_fasciculatus_S2_contig7481.15648.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7481.15648.1
Unique NamemRNA_E_fasciculatus_S2_contig7481.15648.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15648.1 vs.
Match: WSC (domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 3.650e-26
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 MCELTCTGSTYFATQYGRECWCGSADANYALHGESTDCTYACSGDANQICGG 156
            +CELTC GSTYFATQYGRECWCGSAD +YALHGESTDCTYAC+GDA+Q CGG
Sbjct:  233 LCELTCLGSTYFATQYGRECWCGSADMDYALHGESTDCTYACAGDADQTCGG 284
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15648.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE8_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.170e-25
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 MCELTCTGSTYFATQYGRECWCGSADANYALHGESTDCTYACSGDANQICGG 156
            +CELTC GSTYFATQYGRECWCGSA  +YALHGESTDCTY C+G+A+Q CGG
Sbjct:    5 LCELTCLGSTYFATQYGRECWCGSAGMDYALHGESTDCTYGCAGNADQTCGG 56
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15648.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK9_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.800e-25
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 MCELTCTGSTYFATQYGRECWCGSADANYALHGESTDCTYACSGDANQICGG 156
            +CELTC GSTYFATQYGRECWCGSA A+YALHGESTDCTYACSGD +Q CGG
Sbjct:  333 LCELTCEGSTYFATQYGRECWCGSAGADYALHGESTDCTYACSGDTDQTCGG 384
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15648.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.760e-25
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 MCELTCTGSTYFATQYGRECWCGSADANYALHGESTDCTYACSGDANQICGG 156
            +CELTC GSTYFATQYGRECWCGS  A+YALHGEST+CTY CSGDA+Q+CGG
Sbjct:  122 LCELTCLGSTYFATQYGRECWCGSDGADYALHGESTECTYPCSGDADQLCGG 173
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15648.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 5.600e-24
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 MCELTCTGSTYFATQYGRECWCGSADANYALHGESTDCTYACSGDANQICGG 156
            +CELTC G TYFATQYGRECWCGSA A+Y LHGESTDCTYAC GDA+Q CGG
Sbjct:  554 LCELTCNGQTYFATQYGRECWCGSAGADYTLHGESTDCTYACVGDADQTCGG 605
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15648.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE6_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.950e-23
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 MCELTCTGSTYFATQYGRECWCGSADANYALHGESTDCTYACSGDANQICGG 156
            +CE TC G+TYFATQYGRECWCGSA   YALHGESTDCTYAC+GDA+Q CGG
Sbjct:  660 LCEQTCLGNTYFATQYGRECWCGSAGVEYALHGESTDCTYACAGDADQTCGG 711
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15648.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 4.110e-23
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 MCELTCTGSTYFATQYGRECWCGSADANYALHGESTDCTYACSGDANQICGG 156
            +CE TC G+T+FATQYGRECWCGSA A+Y LHGESTDCTYAC+GDA+Q CGG
Sbjct:  355 LCEQTCLGNTFFATQYGRECWCGSAGADYTLHGESTDCTYACAGDADQTCGG 406
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15648.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX48_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 6.760e-23
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 MCELTCTGSTYFATQYGRECWCGSADANYALHGESTDCTYACSGDANQICGG 156
            +CELTC G+TYFATQYG ECWCGSA A+YA+HGEST CTYACSGDA+Q CGG
Sbjct:  498 LCELTCLGNTYFATQYGSECWCGSAGADYAVHGESTICTYACSGDADQTCGG 549
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15648.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ36_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.750e-20
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 MCELTCTGSTYFATQYGRECWCGSADANYALHGESTDCTYACSGDANQICGG 156
            +CELTC GS YF+TQYGRECWCG A  +Y  HGEST+CTY C G+ ++ CGG
Sbjct:   15 LCELTCAGSYYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGG 66
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15648.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS1_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 7.040e-19
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 MCELTCTGSTYFATQYGRECWCGSADANYALHGESTDCTYACSGDANQICGG 156
            +CELTC GS+YF+TQYGRECWCG A  +Y  HGEST+CTY C G+ ++ CGG
Sbjct:  251 LCELTCAGSSYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGG 302
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7481.15648.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
WSC3.650e-2686.54domain containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.170e-2580.77protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.800e-2586.54protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.760e-2582.69protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.600e-2482.69protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.950e-2380.77protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.110e-2378.85protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.760e-2380.77protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
WSC2.750e-2065.38domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized7.040e-1965.38protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7481contigE_fasciculatus_S2_contig7481:5510..6426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score107.8
Seed ortholog evalue1.5e-21
Seed eggNOG ortholog2880.D7FTD7
Model size156
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
Cds size156
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842410.4159915-CDS-E_fasciculatus_S2_contig7481:5509..55661696842410.4159915-CDS-E_fasciculatus_S2_contig7481:5509..5566Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7481 5510..5566 +
1696842410.4287293-CDS-E_fasciculatus_S2_contig7481:6327..64261696842410.4287293-CDS-E_fasciculatus_S2_contig7481:6327..6426Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7481 6328..6426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7481.15648.1prot_E_fasciculatus_S2_contig7481.15648.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7481 5510..6426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7481.15648.1

>prot_E_fasciculatus_S2_contig7481.15648.1 ID=prot_E_fasciculatus_S2_contig7481.15648.1|Name=mRNA_E_fasciculatus_S2_contig7481.15648.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=52bp
MCELTCTGSTYFATQYGRECWCGSADANYALHGESTDCTYACSGDANQIC
GG
back to top

mRNA from alignment at E_fasciculatus_S2_contig7481:5510..6426+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7481.15648.1 ID=mRNA_E_fasciculatus_S2_contig7481.15648.1|Name=mRNA_E_fasciculatus_S2_contig7481.15648.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=917bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7481:5510..6426+ (Ectocarpus fasciculatus EfasUO2)
ATGTGCGAGCTAACGTGCACCGGAAGCACCTACTTCGCCACTCAATACGG
ACGCGAGGTGAGATACGACATGTAGCACAGTCATGGCTCTCATTAGGAAA
GCTTGGGGTTGGTGACCTACTTTTCACAAGCACACATTGAAACCACTGTG
CTTGTGTGATTTCACATCGTCTTGTTCTCATTTCTGAAGGCTCAGCAGAC
ACAGCAACCCCAAGTGAGTGTCTTGCACATATTCTGTCTCGAGCGACGGT
CGAGTTGTACCATTCTTGGTCCTCCACCTCTTGATGCGTTCCGTGTTCAC
GTTCTTCCATGTGACCATCGGAGGAACGGCTAATATGCCGAGTAGAAACC
AGAACGGTGGTCAATGTGGATAAAGAGATACAACGGCGACAACGGCAAGC
AGCGTGCATGCCGTAGCAGTGAACAGGTTTGGAGACAGTCTCCAAACGCC
AGAGAGGAGTGGAGTATATATACATGCGTTCAATCCGGCAACGTGAGAAA
GTGAAACTTGAAAATCCGACTATTTTCCGCCATGGTTCAACTGCGTGTCG
ATGGACGAAGCGCTGAGAGCGTACGGGTGAATCGCCGGTGTGTACGCGTT
CCCAAAGGCAAAGGTCCCCACATGTAATATTGTCGCAAGTCGTCAAACGA
AAATGATTCCAAGGTTCTGCACGTTGGGCTGGCCGTCTGGTCGAGCGTTC
CTTGCCTTTACCGGAACCCACCCTGTCGCGGCCACCAATGTTCTCGACCA
ATTCGCTCACCCCGCCCGTCCGTACACGTTACCTCTATGCATACATGATA
TCACAACCACACGCGCAGTGCTGGTGCGGTTCGGCTGATGCGAACTACGC
TCTACACGGGGAGTCCACCGACTGCACCTACGCCTGCTCAGGGGACGCTA
ACCAGATTTGCGGTGGG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7481:5510..6426+

>mRNA_E_fasciculatus_S2_contig7481.15648.1 ID=mRNA_E_fasciculatus_S2_contig7481.15648.1|Name=mRNA_E_fasciculatus_S2_contig7481.15648.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=156bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7481:5510..6426+ (Ectocarpus fasciculatus EfasUO2)
ATGTGCGAGCTAACGTGCACCGGAAGCACCTACTTCGCCACTCAATACGG
ACGCGAGTGCTGGTGCGGTTCGGCTGATGCGAACTACGCTCTACACGGGG
AGTCCACCGACTGCACCTACGCCTGCTCAGGGGACGCTAACCAGATTTGC
GGTGGG
back to top