mRNA_E_fasciculatus_S2_contig748.15645.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig748.15645.1
Unique NamemRNA_E_fasciculatus_S2_contig748.15645.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig748.15645.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQL5_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 8.550e-98
Identity = 159/180 (88.33%), Postives = 161/180 (89.44%), Query Frame = 2 
Query:   50 MAGPDIKWTAGPGPAPLPYSKRAREAMGVTDDDKPWAHPDPPAAESWGFGGGGESDALREGRLRTNLFLIVLSIIVAIWVYRKVVKRDHSPFFHVSPTPSQSEDVKVSEEDMRTTREARLKRFQETKTSYADMMKEAAGGWAP-----DSDDGEDSVAVEGQESSDGLRRRGGGDQATTG 574
            MAGPDIKWTAGPGPAPLPYSKRAREAMGVTDDDKPWAHPDPPAAESWGFGGGGESD L EGRLRTN FLIVLSII AIWVYRKVVKRDHSPFFHVSPTP QSEDVKVSE DMRT REARLKRFQETKTSYADMMKEAAGG  P     + DDG +SVA EGQ  SDGLRRRGGGDQATTG
Sbjct:    1 MAGPDIKWTAGPGPAPLPYSKRAREAMGVTDDDKPWAHPDPPAAESWGFGGGGESDTLTEGRLRTNFFLIVLSIIFAIWVYRKVVKRDHSPFFHVSPTPPQSEDVKVSE-DMRTAREARLKRFQETKTSYADMMKEAAGGCPPAETVRNDDDGGNSVAAEGQGYSDGLRRRGGGDQATTG 179
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig748.15645.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized8.550e-9888.33protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQL5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig748contigE_fasciculatus_S2_contig748:1937..5032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1800
Hectar predicted targeting categorysignal anchor
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_006120.1
Cds size528
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842409.8351064-UTR-E_fasciculatus_S2_contig748:1936..31591696842409.8351064-UTR-E_fasciculatus_S2_contig748:1936..3159Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig748 1937..3159 -
1696842409.8771791-UTR-E_fasciculatus_S2_contig748:4983..50321696842409.8771791-UTR-E_fasciculatus_S2_contig748:4983..5032Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig748 4984..5032 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842409.8462203-CDS-E_fasciculatus_S2_contig748:3159..33691696842409.8462203-CDS-E_fasciculatus_S2_contig748:3159..3369Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig748 3160..3369 -
1696842409.8564022-CDS-E_fasciculatus_S2_contig748:3931..41531696842409.8564022-CDS-E_fasciculatus_S2_contig748:3931..4153Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig748 3932..4153 -
1696842409.8663778-CDS-E_fasciculatus_S2_contig748:4887..49831696842409.8663778-CDS-E_fasciculatus_S2_contig748:4887..4983Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig748 4888..4983 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig748.15645.1prot_E_fasciculatus_S2_contig748.15645.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig748 3160..4983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig748.15645.1

>prot_E_fasciculatus_S2_contig748.15645.1 ID=prot_E_fasciculatus_S2_contig748.15645.1|Name=mRNA_E_fasciculatus_S2_contig748.15645.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=176bp
MAGPDIKWTAGPGPAPLPYSKRAREAMGVTDDDKPWAHPDPPAAESWGFG
GGGESDALREGRLRTNLFLIVLSIIVAIWVYRKVVKRDHSPFFHVSPTPS
QSEDVKVSEEDMRTTREARLKRFQETKTSYADMMKEAAGGWAPDSDDGED
SVAVEGQESSDGLRRRGGGDQATTG*
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mRNA from alignment at E_fasciculatus_S2_contig748:1937..5032-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig748.15645.1 ID=mRNA_E_fasciculatus_S2_contig748.15645.1|Name=mRNA_E_fasciculatus_S2_contig748.15645.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3096bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig748:1937..5032- (Ectocarpus fasciculatus EfasUO2)
CGCAGCACGAAGCACCCCAGGCGCTAACTAACTGCTCGTGTCTTGCGCTA
TGGCTGGTCCGGATATCAAGTGGACGGCTGGTCCTGGCCCGGCGCCGCTG
CCGTACTCAAAGCGGGCGAGAGAAGCAATGGGTGTTACCGACGATGTAAG
GACACTGCTGCTGCTGTTGTCGAGATGCTGCAAGCAGCTACAGCAGTAGT
TTCAGTGTAGTGCTGATGCTGTCGAAAGAGCCTTTGTCGCACGAAGTGCA
CGCCCAGCGACATTCTACGTTATGGCTGTGGTGGTGTTGGTGGTCCCACA
ATCTTGCATAGAAGCATTCGCCATTATGCTGTAGTCTATGTACTTATCAC
CCATGGCCAATTTTGGTACTACAGCAGTACAGCGCGGCACAGCAGAGTAG
TAGCGCACGTGGATGCAATGCAATAGAGATTTTCAGTAGTAGTCCTGGCT
GATGCACACGTTCTCGAGCAGAGCGTCATGAGCCTCGAAATTTGGTGATC
TTCTCGGATTGCGTGTCCTTGAGGTCTTGACGTGCTTCCGCGTCGAAACT
TGAGGAGTTGGGAACTCCGTTATTGAAGAACGTTTCTACGCTGCAGTAGT
TTTGTGCTCTGCATTTCTCGTAGGGTTGAAGCCTAGACTACAAAGCATAG
TTATCGTCTGTGTGTCACAAATCTGTGCATATCACAGCGGTCACTCTATG
AACCTCCATCGGTTTTCAGACTGCATCACAATGTAAGGGTTGCCTGCAGA
TTACTGCTTCATACGACTCTACATTCTTGCGTCTGGTAACAACCTGCCTG
TGTGGTGTGTGGTGCCACGACGGCTGCTGCGAGTCATGTGCGCGTCTTGA
TCACGCGCTTTATTGCACCTCATGCGCAGGATAAACCATGGGCGCATCCC
GACCCACCCGCTGCAGAAAGCTGGGGGTTCGGCGGCGGTGGTGAGAGTGA
CGCTCTCAGGGAGGGAAGGCTTCGGACCAACTTATTCCTGATCGTTCTCT
CGATCATCGTCGCCATCTGGGTATACCGAAAGGTCGTGAAGAGAGATCAC
TCTCCCTTTTTCCACGTGTCCCCAACACCGTCGCAGTCGGAGGACGTGAA
GGTGAGAGGCCGGAGAGGAGGTAGATTGCCCCATGAGATCGCTCACAAGG
TGAAGAACGAGCGATGGGTGCAGGCGGGATGCCTTGTTTTCTGAGTTGAG
GCGCAACTCTCTTCATTTTCGAGATGGGAGGCAATTCCAGGTTGTTCTGT
GCCACAGGGAAAATTTGAAACATCTCTCGCTCTTTCTGATGTCAAGAGAC
GAGAGGCGTTCTGGATAAAAGTGGTGAATCTGTAGATATGGTGGTGCGTC
TAGATGTTCTAGCCTGTCCCTGCTATAGCATCTCAAGGTCGGTGAATAGC
TTGCCAAGGCAGACGCCCACCCTCGCCAACGGGAGGGCTCAGGCAACCGA
GGTTTGCAGTTTGGCTAAAACTCTCCTTCAAGATCTCCCAAGTACTTGAG
AGCGAGGTTTGCGGCTGTCCTTGTTTCTAAAAGGACCGGCCGAACCAGCT
TTTGAGCCCAGAGGTAAAATATGTGTTTTGTGTGTTAAATCTGACCACGA
CGGTCCATTTATCGCATGTATACTCGGTCGATTGCACCCACAACAAACGT
CGGTGTGCGGCAGGTGTCAGAGGAGGACATGCGAACAACGAGAGAGGCCC
GACTGAAACGGTTCCAGGAAACGAAAACCTCGTACGCTGACATGATGAAG
GAGGCGGCTGGGGGGTGGGCTCCTGACAGTGATGATGGCGAGGATTCTGT
GGCAGTAGAAGGGCAGGAGTCTTCGGATGGGCTGCGACGTAGAGGAGGGG
GCGACCAAGCAACAACAGGCTGAGAGGGTCCATGGTATTCTCTTCGTGCT
CATTGGTATTGTACACGTAGTGTAGACTGTTGTGTTGTACCGTATCACCC
GGCGCGCCTCGCTGAGAGAAATAATGTTACGAACATTTGAGACTGGTTCA
TTCTCTTAATGTCGCCGCAGGGAGTGTGATGATGTAAACGTCACGTGGCG
TATGCTAAGTTTTGTAGCTGTGCGATGTACAGACTGGTGCGGGGAGGATC
TACACACGCACACGCCATCTACAAGTTTTGTTGGCCACTTTCTCTCCAAT
TATGTGCAGTTTGAGAGGTTTAACCCGAGGGGGTTGCGCAGGGGAGAGAC
GTTCACAAACCAGCTGACCGGGTTGTGGATAAGACGTATGCATAGCCCTT
GACGACCAAAAGGGACGAAATTGATTCATATCCTCTTCTACGATGACTAA
ACGATCAACCTGTTTGGAGTACTTGGATACAAGATCCGTTCTGCAAGAGT
ATGTGTGTGTATGGGGGGGGGGATGCTGTTGGGTCCAAGTGCGAGTCCCC
TCGTGAAAGCCCGCACATGTGTTCATGTCTTTTCTTTCTTATCTTTTCTG
CATGTGCTGGAAGGAGCACTGTGTGTAATAATCAAGGTTTTTATTATCTG
CATCGGTCCCCAAACTTGTCTCAAACTGGGTGGACACGGTAGCCTCCGTG
GGTGGGCACGGGGGCCTCTAACACGATTGAATATGCCTGCGGTATTTCGG
TATCGCCCCTTGGGCCGGTTGGAGGTGATGTAATGTCATATGGGCTTGTT
ATTTTCTTCACTTACCGAGTTCAGCAGTAAAAATCACTCCGGGGTGTCGG
AAAACACCACGGGAGGAAGGTCATGACGGCTTTAGAGACACGCTTTTCTT
GTTACCAAGTGGTCCCGTCTACAACCCATGCATACTGTGTTTCAGGTCGT
CCTGCCTCTAGGCCTAAAACTCTCTTTGTGATTCAACCTGTCATTGGTGC
TAAGCACATATCTGGAGCCGGTTCGAGAGGCATGCATGGCCGGGCGATTG
CCCTGCCTGGTTGAACCGAAGGCGGTGGATTCCTCTGTCGATTTGCGTCT
GCTTCCCTTATAAACCGAAGTTTGTGGGTAAACCCTTTCATTCTTGCCCT
GAGGGAATATGGTGCTGATACCGACTGCTGTTGTGTGATATGGATGAGTC
CTCATCCTGGCCATGGAATGCGTTCGTAAACTGCACAAGGTACCCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig748:1937..5032-

>mRNA_E_fasciculatus_S2_contig748.15645.1 ID=mRNA_E_fasciculatus_S2_contig748.15645.1|Name=mRNA_E_fasciculatus_S2_contig748.15645.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=528bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig748:1937..5032- (Ectocarpus fasciculatus EfasUO2)
ATGGCTGGTCCGGATATCAAGTGGACGGCTGGTCCTGGCCCGGCGCCGCT
GCCGTACTCAAAGCGGGCGAGAGAAGCAATGGGTGTTACCGACGATGATA
AACCATGGGCGCATCCCGACCCACCCGCTGCAGAAAGCTGGGGGTTCGGC
GGCGGTGGTGAGAGTGACGCTCTCAGGGAGGGAAGGCTTCGGACCAACTT
ATTCCTGATCGTTCTCTCGATCATCGTCGCCATCTGGGTATACCGAAAGG
TCGTGAAGAGAGATCACTCTCCCTTTTTCCACGTGTCCCCAACACCGTCG
CAGTCGGAGGACGTGAAGGTGTCAGAGGAGGACATGCGAACAACGAGAGA
GGCCCGACTGAAACGGTTCCAGGAAACGAAAACCTCGTACGCTGACATGA
TGAAGGAGGCGGCTGGGGGGTGGGCTCCTGACAGTGATGATGGCGAGGAT
TCTGTGGCAGTAGAAGGGCAGGAGTCTTCGGATGGGCTGCGACGTAGAGG
AGGGGGCGACCAAGCAACAACAGGCTGA
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