mRNA_E_fasciculatus_S2_contig7476.15643.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7476.15643.1
Unique NamemRNA_E_fasciculatus_S2_contig7476.15643.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7476.15643.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Z5_9PHAE)

HSP 1 Score: 426 bits (1094), Expect = 4.840e-145
Identity = 241/326 (73.93%), Postives = 262/326 (80.37%), Query Frame = 1 
Query:    1 MDRKVRRSAMDLLAELTVLHSHIEKELEGVAVAVNDLFEEDHQAAATTSARLQLSKNRILAALARQRILLWEFSAESEPAAVFAHSKDSEEVFGSRHQYPIHEPAVGLIAD-KQCTACG-PGNSSSVLRGQPTERKLNKELQWKRDTLVRMKHLLRRKAGDLGATEAERGAIRRDMAKVDAALQGLRDCQA--------DTGESHDALGAPQPSKNETAQELD-----GRRFAESV-REVELHLPDGLDVLLGRIAEGVRPSHRRRTISTADTPAPSTPRQRGAYSPCSVVSKHVPEKNAGGEAAAEASGQTGCMVGPNNRVGESC 930
            MD  +R  AMDLLAELTVLHSH+E+ELEGVAVAVNDLFEEDHQAAA+TSARLQLSKNRILAAL RQRILLWEFS ESEPAAVFA S+DS+   GSRHQ PIH+PAVGLIAD KQCTACG PGN SS L GQP  RKL++ELQWKRDTLVRMKHLLRRKAGDLGATEA RGAIRRDMAKVDAAL+ L++CQ         D GE +D+LGA QP KNE A+E D     GR +AESV REVEL LPDGLDVLLGRIAEGVRPS RRR  +TAD PAPSTP Q G  SPC + S HVPE N   EA  +A GQ+G  VGPN+RVGE C
Sbjct:    1 MDHTIRGPAMDLLAELTVLHSHVERELEGVAVAVNDLFEEDHQAAASTSARLQLSKNRILAALTRQRILLWEFSTESEPAAVFARSEDSDGNLGSRHQNPIHKPAVGLIADNKQCTACGRPGNPSSGLSGQPPARKLDEELQWKRDTLVRMKHLLRRKAGDLGATEAARGAIRRDMAKVDAALRDLQECQLGGLLPPQMDAGEDNDSLGASQPQKNEKAREQDNSSNNGRCYAESVLREVELRLPDGLDVLLGRIAEGVRPSRRRRPTTTADAPAPSTPMQPGTDSPCPMASYHVPENNTRKEAV-KAFGQSGRTVGPNDRVGERC 325
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7476.15643.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.840e-14573.93protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7476contigE_fasciculatus_S2_contig7476:6030..7520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size930
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_003250.1
Cds size930
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842409.689147-CDS-E_fasciculatus_S2_contig7476:6029..67181696842409.689147-CDS-E_fasciculatus_S2_contig7476:6029..6718Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7476 6030..6718 +
1696842409.6993473-CDS-E_fasciculatus_S2_contig7476:7279..75201696842409.6993473-CDS-E_fasciculatus_S2_contig7476:7279..7520Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7476 7280..7520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7476.15643.1prot_E_fasciculatus_S2_contig7476.15643.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7476 6030..7520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7476.15643.1

>prot_E_fasciculatus_S2_contig7476.15643.1 ID=prot_E_fasciculatus_S2_contig7476.15643.1|Name=mRNA_E_fasciculatus_S2_contig7476.15643.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=310bp
MDRKVRRSAMDLLAELTVLHSHIEKELEGVAVAVNDLFEEDHQAAATTSA
RLQLSKNRILAALARQRILLWEFSAESEPAAVFAHSKDSEEVFGSRHQYP
IHEPAVGLIADKQCTACGPGNSSSVLRGQPTERKLNKELQWKRDTLVRMK
HLLRRKAGDLGATEAERGAIRRDMAKVDAALQGLRDCQADTGESHDALGA
PQPSKNETAQELDGRRFAESVREVELHLPDGLDVLLGRIAEGVRPSHRRR
TISTADTPAPSTPRQRGAYSPCSVVSKHVPEKNAGGEAAAEASGQTGCMV
GPNNRVGESC
back to top

mRNA from alignment at E_fasciculatus_S2_contig7476:6030..7520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7476.15643.1 ID=mRNA_E_fasciculatus_S2_contig7476.15643.1|Name=mRNA_E_fasciculatus_S2_contig7476.15643.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1491bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7476:6030..7520+ (Ectocarpus fasciculatus EfasUO2)
ATGGACCGCAAGGTAAGGCGGTCTGCGATGGACCTGCTCGCCGAGCTTAC
AGTCCTTCACAGCCATATCGAGAAAGAGCTCGAAGGCGTCGCGGTTGCTG
TAAACGACTTGTTTGAGGAGGACCATCAAGCAGCAGCAACAACATCGGCA
AGGCTGCAGCTGTCGAAAAATAGGATCCTGGCGGCTCTCGCTCGGCAGCG
GATCCTTCTCTGGGAGTTCTCGGCGGAGAGCGAGCCGGCAGCGGTGTTCG
CTCACTCGAAAGATAGCGAGGAAGTCTTCGGGAGCCGTCACCAATATCCA
ATCCATGAACCGGCCGTTGGCTTGATTGCGGATAAACAATGCACCGCGTG
CGGCCCCGGCAACTCTAGCAGCGTTTTGCGAGGCCAACCAACAGAGAGAA
AATTGAACAAGGAGCTCCAGTGGAAGCGCGATACGCTCGTACGAATGAAG
CATCTGCTACGACGAAAGGCGGGAGACCTGGGAGCGACGGAGGCGGAGCG
TGGGGCGATCAGGCGTGACATGGCCAAGGTCGATGCCGCGCTGCAAGGGC
TACGGGACTGTCAGGCGGACACCGGCGAGAGCCATGATGCCCTCGGAGCA
CCACAGCCCTCGAAGAATGAAACGGCTCAAGAGCTGGACGGTCGCCGCTT
CGCCGAATCCGTCCGCGAGGTCGAGCTTCATCTTCCCGAGTGAGTTGTAC
GGCGGTGGTGTGTAGAGACTGCTGTTGTTGTGTAGACTACGGTGGGCGCC
AAGAAACTTGTGCGTAACCTATCAGCCATTATAGTTGCACCGACAGTAGA
ATTGGAGTTCCTCTGTATATGTGGCACTGCCCTTCGTGCGAACGTGCTTC
GCTTGCCATGGAGAATATTCGTGGATCTCTCAGTCTTCACGCACACCCTG
TTATGTGGACGAGGCCATACTTCCAGCTGCTGTAGGTCAAGACAGGGAAG
CACCTGTCTGTGGGTTTTCTGTTGCGAAGCACGGACCACTACATCGCTAA
ATAGTCAGCGCTGACTAGTGGTCTAAAGGTCATCAGCGCTGATTAGTGGT
GTAGTGGTGTATCGTGCTTCTCAACTTTTCCAATGTTGTCGTCCGTCCTC
GCACTATGTACCTAGAAACCAGTGCGACCTCTCTCTGCTCAGCACCTTCT
ACTGTAACATCCATAGACTACTTTTGTTGTTGTTGTGGAATTCAAAAAGC
CAATGCGCTCATCTCCTTCTCATGGTCGCGCTCTTGTCGCCCCCAAGCAG
CGGTCTTGACGTGCTACTGGGACGCATAGCGGAAGGAGTTCGACCCTCTC
ATCGAAGAAGAACGATAAGTACAGCCGATACTCCTGCTCCTTCTACACCG
AGGCAGCGCGGAGCCTACTCACCCTGTTCCGTGGTCTCCAAACACGTGCC
AGAGAAGAACGCGGGGGGAGAGGCAGCAGCAGAAGCGTCTGGTCAAACAG
GATGCATGGTTGGCCCGAACAACAGAGTCGGGGAGAGCTGC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7476:6030..7520+

>mRNA_E_fasciculatus_S2_contig7476.15643.1 ID=mRNA_E_fasciculatus_S2_contig7476.15643.1|Name=mRNA_E_fasciculatus_S2_contig7476.15643.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=930bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7476:6030..7520+ (Ectocarpus fasciculatus EfasUO2)
ATGGACCGCAAGGTAAGGCGGTCTGCGATGGACCTGCTCGCCGAGCTTAC
AGTCCTTCACAGCCATATCGAGAAAGAGCTCGAAGGCGTCGCGGTTGCTG
TAAACGACTTGTTTGAGGAGGACCATCAAGCAGCAGCAACAACATCGGCA
AGGCTGCAGCTGTCGAAAAATAGGATCCTGGCGGCTCTCGCTCGGCAGCG
GATCCTTCTCTGGGAGTTCTCGGCGGAGAGCGAGCCGGCAGCGGTGTTCG
CTCACTCGAAAGATAGCGAGGAAGTCTTCGGGAGCCGTCACCAATATCCA
ATCCATGAACCGGCCGTTGGCTTGATTGCGGATAAACAATGCACCGCGTG
CGGCCCCGGCAACTCTAGCAGCGTTTTGCGAGGCCAACCAACAGAGAGAA
AATTGAACAAGGAGCTCCAGTGGAAGCGCGATACGCTCGTACGAATGAAG
CATCTGCTACGACGAAAGGCGGGAGACCTGGGAGCGACGGAGGCGGAGCG
TGGGGCGATCAGGCGTGACATGGCCAAGGTCGATGCCGCGCTGCAAGGGC
TACGGGACTGTCAGGCGGACACCGGCGAGAGCCATGATGCCCTCGGAGCA
CCACAGCCCTCGAAGAATGAAACGGCTCAAGAGCTGGACGGTCGCCGCTT
CGCCGAATCCGTCCGCGAGGTCGAGCTTCATCTTCCCGACGGTCTTGACG
TGCTACTGGGACGCATAGCGGAAGGAGTTCGACCCTCTCATCGAAGAAGA
ACGATAAGTACAGCCGATACTCCTGCTCCTTCTACACCGAGGCAGCGCGG
AGCCTACTCACCCTGTTCCGTGGTCTCCAAACACGTGCCAGAGAAGAACG
CGGGGGGAGAGGCAGCAGCAGAAGCGTCTGGTCAAACAGGATGCATGGTT
GGCCCGAACAACAGAGTCGGGGAGAGCTGC
back to top