mRNA_E_fasciculatus_S2_contig7475.15641.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D3_ECTSI) HSP 1 Score: 189 bits (481), Expect = 4.790e-54 Identity = 84/90 (93.33%), Postives = 85/90 (94.44%), Query Frame = 3
Query: 24 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHRKPRGDQGGG---DPLAALP 284
RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWA+EGCCSRHR RGDQGGG DPLAALP
Sbjct: 89 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWAEEGCCSRHRPRRGDQGGGGAGDPLAALP 178
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V6U6_9STRA) HSP 1 Score: 138 bits (348), Expect = 3.070e-40 Identity = 56/72 (77.78%), Postives = 59/72 (81.94%), Query Frame = 3
Query: 21 GRVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHR 236
GR CGYVF+RGDIAWNCR CQ DSTCV CD CF SDH GH V+FHRT+PGGCCDCGD EAW EGCC RHR
Sbjct: 43 GRPCGYVFRRGDIAWNCRTCQTDSTCVLCDRCFHESDHEGHEVFFHRTSPGGCCDCGDIEAWKIEGCCPRHR 114
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EF35_9STRA) HSP 1 Score: 139 bits (350), Expect = 4.100e-40 Identity = 57/71 (80.28%), Postives = 57/71 (80.28%), Query Frame = 3
Query: 24 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHR 236
R CGYVFKRGDIAWNCR CQ DSTCV CD CFR SDH GH VYFHRT PGGCCDCGD EAW EGCC HR
Sbjct: 27 RPCGYVFKRGDIAWNCRTCQTDSTCVICDTCFRSSDHEGHEVYFHRTTPGGCCDCGDAEAWKPEGCCPAHR 97
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LKQ2_9STRA) HSP 1 Score: 138 bits (347), Expect = 6.650e-40 Identity = 57/76 (75.00%), Postives = 62/76 (81.58%), Query Frame = 3
Query: 9 TATIGRVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHR 236
T T R CGYVFKRGD+AWNCR CQ DSTCV CDACF+ SDHTGH V FH+T+PGGCCDCGD EAWA +GCC HR
Sbjct: 30 TMTTPRPCGYVFKRGDMAWNCRTCQTDSTCVLCDACFQASDHTGHEVSFHQTSPGGCCDCGDVEAWAAKGCCDLHR 105
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P848_9STRA) HSP 1 Score: 136 bits (342), Expect = 6.520e-39 Identity = 61/93 (65.59%), Postives = 66/93 (70.97%), Query Frame = 3
Query: 24 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHR-------KPRGDQGGGDPLAAL 281
R CGYVF+RGDIAWNCR CQ D TCV CD CFRRSDH GH VYFHRT PGGCCDCGD EAW +GCC HR +P GD DP+ A+
Sbjct: 51 RPCGYVFQRGDIAWNCRTCQTDPTCVICDDCFRRSDHQGHEVYFHRTTPGGCCDCGDMEAWKIDGCCDVHRPDTTQVVQPSGD----DPMEAV 139
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase (Fragment) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SCK7_9STRA) HSP 1 Score: 137 bits (346), Expect = 5.410e-38 Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 3
Query: 30 CGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHRKPR 245
CGYVFKRGDIAWNCR CQ DSTCV CD CFR S+H GH V+FHRT+PGGCCDCGD EAW EGCCS+H P+
Sbjct: 135 CGYVFKRGDIAWNCRTCQADSTCVLCDECFRNSNHKGHEVFFHRTSPGGCCDCGDTEAWKAEGCCSKHVPPQ 206
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKC4_FISSO) HSP 1 Score: 140 bits (354), Expect = 7.840e-37 Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = 3
Query: 24 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHR 236
R CGYVFKRGDIAWNCR CQ D+TCV CD CFR SDH GH VYFHRT+PGGCCDCGD EAW EGCC +HR
Sbjct: 185 RPCGYVFKRGDIAWNCRTCQTDATCVICDTCFRHSDHQGHEVYFHRTSPGGCCDCGDAEAWKSEGCCDKHR 255
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YNA8_NANGC) HSP 1 Score: 130 bits (327), Expect = 2.430e-36 Identity = 55/86 (63.95%), Postives = 61/86 (70.93%), Query Frame = 3
Query: 27 VCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHRKPRGDQGGGDPLAALP 284
VCGY FKRGD+ WNCR CQ D TCVQCD CFR SDH GH VYFH+ +PGGCCDCGD EAW GCC+ H G DP+ +LP
Sbjct: 72 VCGYTFKRGDLCWNCRSCQTDPTCVQCDPCFRASDHAGHEVYFHQASPGGCCDCGDLEAWDRAGCCTAHS---GSDPFQDPVDSLP 154
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z3G4_9STRA) HSP 1 Score: 138 bits (348), Expect = 2.510e-36 Identity = 56/72 (77.78%), Postives = 59/72 (81.94%), Query Frame = 3
Query: 21 GRVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHR 236
GR CGYVF+RGDIAWNCR CQ DSTCV CD CF SDH GH V+FHRT+PGGCCDCGD EAW EGCC RHR
Sbjct: 288 GRPCGYVFRRGDIAWNCRTCQTDSTCVLCDRCFHESDHEGHEVFFHRTSPGGCCDCGDIEAWKVEGCCPRHR 359
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGT1_9STRA) HSP 1 Score: 138 bits (348), Expect = 5.010e-36 Identity = 59/86 (68.60%), Postives = 68/86 (79.07%), Query Frame = 3
Query: 24 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHRKPRGDQGGGDPLAAL 281
R CGYVF+ GDI WNCR C+ DSTCVQCDACF+ SDHTGH V+FH+ +P GCCDCGDEEAWA EGCC RHR+ R ++ DPL L
Sbjct: 92 RYCGYVFREGDICWNCRTCEKDSTCVQCDACFQLSDHTGHDVFFHKASPNGCCDCGDEEAWAWEGCCPRHRR-RENEELRDPLEVL 176 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7475.15641.1 >prot_E_fasciculatus_S2_contig7475.15641.1 ID=prot_E_fasciculatus_S2_contig7475.15641.1|Name=mRNA_E_fasciculatus_S2_contig7475.15641.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=95bp RRRRRRSEGSAGTCSSAATSRGTAASARWTARACSATPASGARTTRGTRCback to top mRNA from alignment at E_fasciculatus_S2_contig7475:650..1243- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7475.15641.1 ID=mRNA_E_fasciculatus_S2_contig7475.15641.1|Name=mRNA_E_fasciculatus_S2_contig7475.15641.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=594bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7475:650..1243- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7475:650..1243- >mRNA_E_fasciculatus_S2_contig7475.15641.1 ID=mRNA_E_fasciculatus_S2_contig7475.15641.1|Name=mRNA_E_fasciculatus_S2_contig7475.15641.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=285bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7475:650..1243- (Ectocarpus fasciculatus EfasUO2)back to top |