mRNA_E_fasciculatus_S2_contig7473.15639.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7473.15639.1
Unique NamemRNA_E_fasciculatus_S2_contig7473.15639.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7473.15639.1 vs.
Match: Lon (N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI81_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.330e-47
Identity = 89/113 (78.76%), Postives = 92/113 (81.42%), Query Frame = 2 
Query:   11 ELEDLHARAKTMCNGFLGPFKGQLVEAHGKMPEDAAGLSLWMASLLPFYAPDKHSLVRSRCTRRRMRACLDCAASMEEMARAXXXXXXXXXXXXXXXXXXXXXXXXXRPAQPA 349
            ELEDLH RAKTMCNGFLGPFKGQLVEAHG+MPEDA GLS+WMASLLPFY PDKHSLVRSRCTRRRMR CLDCAASMEEMARA                 XXXXXXXXRP+QPA
Sbjct:  155 ELEDLHTRAKTMCNGFLGPFKGQLVEAHGRMPEDAVGLSMWMASLLPFYPPDKHSLVRSRCTRRRMRTCLDCAASMEEMARAAARREEKSSAGDVSAGEXXXXXXXXRPSQPA 267
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BLAST of mRNA_E_fasciculatus_S2_contig7473.15639.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS7_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 9.450e-46
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 2 
Query:    5 VGELEDLHARAKTMCNGFLGPFKGQLVEAHGKMPEDAAGLSLWMASLLPFYAPDKHSLVRSRCTRRRMRACLDCAASMEEMARA 256
             GEL DLH RAKT+CNGFLGPFKGQLVEAHG+MPEDA GLS+WMASLLPFY PDKHSLVRSRCTRRRMRACLDCAASMEEMA+A
Sbjct:  237 AGELTDLHTRAKTICNGFLGPFKGQLVEAHGRMPEDAVGLSMWMASLLPFYPPDKHSLVRSRCTRRRMRACLDCAASMEEMAQA 320
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7473.15639.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Lon2.330e-4778.76N-terminal domain-containing protein n=1 Tax=Ectoc... [more]
RING-type9.450e-4689.29domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7473contigE_fasciculatus_S2_contig7473:311..1198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size394
Hectar predicted targeting categoryother localisation
Exons2
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842409.3644602-CDS-E_fasciculatus_S2_contig7473:310..3831696842409.3644602-CDS-E_fasciculatus_S2_contig7473:310..383Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7473 311..383 +
1696842409.3751204-CDS-E_fasciculatus_S2_contig7473:878..11981696842409.3751204-CDS-E_fasciculatus_S2_contig7473:878..1198Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7473 879..1198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7473.15639.1prot_E_fasciculatus_S2_contig7473.15639.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7473 311..1198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7473.15639.1

>prot_E_fasciculatus_S2_contig7473.15639.1 ID=prot_E_fasciculatus_S2_contig7473.15639.1|Name=mRNA_E_fasciculatus_S2_contig7473.15639.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=131bp
GRGRAGRPPRASEDHVQRLPRPVQGPAGGGSREDAGRRRGSVVVDGVPPA
VLRPGQALPRAVQVHATPHARLPRLRRLHGGDGPRGCSTRGEELGGGRIC
CRWRGATTTAAAGAAGGGGGGGGGGGGGSSG
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mRNA from alignment at E_fasciculatus_S2_contig7473:311..1198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7473.15639.1 ID=mRNA_E_fasciculatus_S2_contig7473.15639.1|Name=mRNA_E_fasciculatus_S2_contig7473.15639.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=888bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7473:311..1198+ (Ectocarpus fasciculatus EfasUO2)
GGACGTGGGCGAGCTGGAAGACCTCCACGCGCGAGCGAAGACCATGTGCA
ACGGCTTCCTCGGCCCGTTCAAGGTGCGTTGGTTCGCTGCGGTCTTGGGT
GGCTGTGACTTGTGTTTGAAGATTATTTCCTCCTCCCCGCCGTTTCAGAG
TATCCAACCTCCAACCTCCTTTTTTTGTGCCCGGCCGGATGATGGAACGA
ACAAAATAACTCCCTTGAAGTCATTGTACGGCGGAAAGAGAGAGGGGTGG
GAATTTGGAGGACCGTCGTGTGTAGGTAGGTAGGTGGCTTCTGTGGCCGG
GTGTGCTTCCTTCCGTGATAGATCCACGTACACATGCGTGCCGTCACTGA
TGCTGCATCTGTCTTTTTCGAGGCTCGTGTTTTCCTCTCCTTCTCTGACT
CCGGCTGCCCGCCCCTCCCCCGAACCCCCTCTCCGTCTCTTTAGCTATAA
TGAAGTGCGAGGGTTGATTTGTTGTCTGATTATGCACGCCCCCGGGTCTC
GCATGGCAACCAAGTATACTCTCTCTCTCTAACTGTTCTTGTTTCATTTT
CGACCGATTTTTCAACAGGGCCAGCTGGTGGAGGCTCACGGGAAGATGCC
GGAAGACGCCGCGGGTCTGTCGTTGTGGATGGCGTCCCTCCTGCCGTTCT
ACGCCCCGGACAAGCACTCCCTCGTGCGGTCCAGGTGCACGCGACGCCGC
ATGCGCGCCTGCCTCGACTGCGCCGCCTCCATGGAGGAGATGGCCCGCGC
GGCTGCTCGACGAGAGGAGAAGAACTCGGCGGGGGACGCATCTGCTGCCG
GTGGCGAGGGGCAACAACCACCGCCGCGGCCGGCGCAGCCGGCGGCGGAG
GCGGCGGCGGAGGCGGCGGCGGTGGCGGTAGCTCAGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7473:311..1198+

>mRNA_E_fasciculatus_S2_contig7473.15639.1 ID=mRNA_E_fasciculatus_S2_contig7473.15639.1|Name=mRNA_E_fasciculatus_S2_contig7473.15639.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=393bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7473:311..1198+ (Ectocarpus fasciculatus EfasUO2)
GGACGTGGGCGAGCTGGAAGACCTCCACGCGCGAGCGAAGACCATGTGCA
ACGGCTTCCTCGGCCCGTTCAAGGGCCAGCTGGTGGAGGCTCACGGGAAG
ATGCCGGAAGACGCCGCGGGTCTGTCGTTGTGGATGGCGTCCCTCCTGCC
GTTCTACGCCCCGGACAAGCACTCCCTCGTGCGGTCCAGGTGCACGCGAC
GCCGCATGCGCGCCTGCCTCGACTGCGCCGCCTCCATGGAGGAGATGGCC
CGCGCGGCTGCTCGACGAGAGGAGAAGAACTCGGCGGGGGACGCATCTGC
TGCCGGTGGCGAGGGGCAACAACCACCGCCGCGGCCGGCGCAGCCGGCGG
CGGAGGCGGCGGCGGAGGCGGCGGCGGTGGCGGTAGCTCAGGC
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