mRNA_E_fasciculatus_S2_contig7469.15635.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7469.15635.1
Unique NamemRNA_E_fasciculatus_S2_contig7469.15635.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7469.15635.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K450_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 9.850e-86
Identity = 389/536 (72.57%), Postives = 407/536 (75.93%), Query Frame = 1 
Query:    1 MTRGGSGVHSSTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGTAAATAANPAEEVARGLEALEAVAIAAKTSSSRSPPGTRNGSFSSTIGGGE-FTPLRSADSWHTVEASDPPVGWRRRGRKEGRGMAALKSVAGSQGSSLLHNSSXXXXXXXXXXXXTSSLPLAEFPQPRSXXXXXXXAGLSLVRINSDASTNSGAGFG-ASTTRSSSEFSTS-PAVAATGGXXXXXXXXXXS--ADNSPEMRFNKSRDSVLMLKSAPGVFRSRKARTGSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQMSPRAKGFNAIMFHESFTPVNTEAGADRTKKPQRGWWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDPRPARGGGSGARR--VGESVAAVTRGGNSIAAENEQLKLESKRLASALSTARESAEMTEERSRVLAKQATLRVSG 1587
            MTRGG+GVHSSTQ              XXXXXXXXXXXXXXX          N AEEVARGLEALEAVAIAAKTSSSRSPPGTRNGSFSSTIGGG+ FTPLRSADS HTVEASDPP GWR RGRKE RGMAALKSVAG      LH SS            T+SLPLAEFP+ +S       AGLSLVRINSDASTNSGAGFG A+ TRS+SEFS S  A  A GG          S  ADNSPE+RFNKSRDSVL+LKSAPGV RSRKA      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          +QMSPRAKGF+AIMFHESFT V+T+AGAD  KK Q     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 VG SVAA+  GG+SIAAENEQLKLES+RLASALSTARESA+MT+ERSRVLAKQATLRV G
Sbjct:    1 MTRGGNGVHSSTQRSSSSIAAGLRSGSXXXXXXXXXXXXXXXXXXX------NSAEEVARGLEALEAVAIAAKTSSSRSPPGTRNGSFSSTIGGGDDFTPLRSADSCHTVEASDPP-GWRGRGRKEERGMAALKSVAG------LHGSSFPGSSASAAGDCTTSLPLAEFPRLQSSTPPPKPAGLSLVRINSDASTNSGAGFGGAANTRSTSEFSPSFMARVAAGGKNAAPGGNSNSSSADNSPEVRFNKSRDSVLILKSAPGVCRSRKASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNKM------QQMSPRAKGFSAIMFHESFTSVDTKAGADPIKKQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGASVAALA-GGSSIAAENEQLKLESRRLASALSTARESADMTKERSRVLAKQATLRVRG 516
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7469.15635.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized9.850e-8672.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7469contigE_fasciculatus_S2_contig7469:592..2802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size1614
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003520.4
Cds size1614
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842408.8945827-CDS-E_fasciculatus_S2_contig7469:591..6871696842408.8945827-CDS-E_fasciculatus_S2_contig7469:591..687Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7469 592..687 -
1696842408.9046113-CDS-E_fasciculatus_S2_contig7469:1284..28021696842408.9046113-CDS-E_fasciculatus_S2_contig7469:1284..2802Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7469 1285..2802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7469.15635.1prot_E_fasciculatus_S2_contig7469.15635.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7469 592..2802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7469.15635.1

>prot_E_fasciculatus_S2_contig7469.15635.1 ID=prot_E_fasciculatus_S2_contig7469.15635.1|Name=mRNA_E_fasciculatus_S2_contig7469.15635.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=538bp
MTRGGSGVHSSTQQRRRSSSSSSSIAAGLRSSSSSSSKNRTTVEGTAAAT
AANPAEEVARGLEALEAVAIAAKTSSSRSPPGTRNGSFSSTIGGGEFTPL
RSADSWHTVEASDPPVGWRRRGRKEGRGMAALKSVAGSQGSSLLHNSSAS
AAAGGGVGGGTSSLPLAEFPQPRSSSPPPPPAGLSLVRINSDASTNSGAG
FGASTTRSSSEFSTSPAVAATGGNAAAGGSNSSSADNSPEMRFNKSRDSV
LMLKSAPGVFRSRKARTGSAAAAAAPAVAENASHGGSKTNDTIAAARRSL
RRTGSLPVVDAANNDNASAAVAAAAGSTDAPDKQQQQQQQQQQQQPKRSS
SSSSLTKKKQMSPRAKGFNAIMFHESFTPVNTEAGADRTKKPQRGWWVKE
NNHHPLSPPPVLSNPPRPLAPPRQQQQQQQQQQQQQQRQQQQRQQAGEGV
VVVAEDPRPARGGGSGARRVGESVAAVTRGGNSIAAENEQLKLESKRLAS
ALSTARESAEMTEERSRVLAKQATLRVSGRKGKKESSQ
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mRNA from alignment at E_fasciculatus_S2_contig7469:592..2802-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7469.15635.1 ID=mRNA_E_fasciculatus_S2_contig7469.15635.1|Name=mRNA_E_fasciculatus_S2_contig7469.15635.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2211bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7469:592..2802- (Ectocarpus fasciculatus EfasUO2)
ATGACGAGGGGCGGCAGCGGCGTGCACAGCAGCACCCAGCAGAGGAGGAG
GAGCAGCAGCAGCAGCAGCAGTATCGCCGCCGGTCTCCGCAGCAGCAGCA
GCAGCAGCAGCAAGAACAGGACCACGGTAGAAGGCACAGCAGCAGCGACC
GCCGCCAACCCCGCGGAAGAGGTCGCGAGAGGCCTCGAGGCGCTCGAGGC
GGTCGCCATCGCGGCCAAGACCTCCTCCAGCCGATCGCCCCCGGGGACTC
GGAACGGCTCGTTCTCGTCAACAATCGGCGGCGGCGAATTCACGCCACTG
CGGTCGGCGGACTCTTGGCACACCGTGGAGGCCTCAGACCCGCCGGTGGG
CTGGAGGCGGAGAGGGCGGAAGGAGGGGAGAGGGATGGCGGCTCTCAAGA
GCGTGGCCGGGTCGCAGGGTTCGTCGCTGCTCCACAACAGTAGCGCTTCC
GCCGCGGCCGGCGGCGGCGTCGGCGGCGGCACTTCTTCTCTGCCGTTAGC
GGAGTTTCCTCAGCCGCGGTCGAGCTCGCCCCCGCCCCCGCCCGCGGGGC
TATCACTCGTCCGCATCAACAGCGACGCCTCGACGAACAGCGGCGCTGGC
TTCGGCGCCTCCACCACCCGGAGCAGCTCCGAGTTCTCTACCTCCCCGGC
GGTTGCCGCCACGGGTGGGAATGCAGCCGCAGGCGGTAGCAACTCCTCCT
CCGCCGACAACTCGCCGGAGATGAGGTTCAACAAGTCGAGGGACTCGGTG
CTGATGCTGAAATCAGCCCCCGGGGTCTTTCGGAGCAGGAAGGCGAGGAC
CGGATCTGCTGCTGCTGCCGCCGCTCCTGCGGTGGCGGAAAACGCCTCCC
ACGGTGGGAGCAAGACCAATGACACGATCGCCGCTGCCCGCCGGAGCCTC
CGTAGGACGGGGTCCCTCCCCGTGGTCGACGCCGCCAACAACGATAACGC
CTCCGCGGCGGTGGCGGCAGCGGCGGGGTCGACGGATGCTCCAGACAAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGAAGCGCTCCTCT
TCTTCCTCCTCGTTGACCAAGAAGAAGCAGATGTCCCCTCGCGCGAAAGG
GTTCAACGCGATCATGTTTCACGAGAGCTTCACGCCCGTCAACACCGAGG
CCGGCGCCGACCGGACCAAGAAGCCGCAGCGAGGTTGGTGGGTGAAAGAG
AACAACCACCACCCTCTATCGCCACCGCCAGTACTGTCGAACCCCCCTCG
TCCGCTTGCCCCTCCGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGAGGCAGCAACAACAACGGCAGCAGGCCGGCGAGGGTGTC
GTCGTCGTCGCCGAAGACCCCCGGCCTGCGCGGGGTGGCGGTAGCGGCGC
CAGGCGGGTCGGCGAGAGCGTCGCTGCAGTCACGAGAGGAGGAAACAGCA
TCGCGGCCGAGAACGAACAGCTCAAGCTGGAGAGCAAGCGGCTCGCGAGC
GCGCTGTCTACGGCGAGGGTGAGTTACACTTGAGGACGAAGCGGATATTT
TGTAGAAACTATTTAAAAATCACGGAAATAGTACCCGTTCGAGATATAAC
AGCAGTCGAAAGGGATGTGCTGAAGTCTTTCCCTTAACCTAACCCGCTCT
CTGACCGGTCAAAAAAGCTAGCTTGAGATCGAGTTCGGGCCGCCCGAGCA
AAGCTGTCCATTGGTAAAAATAGACAGCAAATGGCGCGCGCACTGAAAGA
ACTCGGCAGTTGAAAGCTTCATGCTCAACCTTGTATTAAAACATTGAATA
AGAGCCTCAACACCGCTCGTGTTTGGTCAGTAGGGCTGAAGAAGAATCCC
CACACTAAGACCTACCTATGTTGCGGCCGTTTACCGCCCACAAGAGGACA
CCCGCAAAAAGCGCACTCAGCACGAGGAGGGTCGATATCTCAATGTCGCA
ATGCGCACGTACGTTCAGTTCTCTGTTGCCGAAACTATTTTGAGGTAGTT
CCTATCGCGAAGGAAGGCTACACCAGAGTGACTTCGTGGTACGCCCAGAA
TTTATCGTGATATTTTATTTGTTTTCTCTGTTCGTTCCATATTTCAAAAC
GATGACGACGAGAAGGAGAGCGCGGAGATGACGGAGGAGAGGTCCAGGGT
GCTGGCCAAACAAGCGACTTTGCGGGTGAGCGGCAGAAAAGGAAAGAAGG
AATCATCACAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7469:592..2802-

>mRNA_E_fasciculatus_S2_contig7469.15635.1 ID=mRNA_E_fasciculatus_S2_contig7469.15635.1|Name=mRNA_E_fasciculatus_S2_contig7469.15635.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1614bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7469:592..2802- (Ectocarpus fasciculatus EfasUO2)
ATGACGAGGGGCGGCAGCGGCGTGCACAGCAGCACCCAGCAGAGGAGGAG
GAGCAGCAGCAGCAGCAGCAGTATCGCCGCCGGTCTCCGCAGCAGCAGCA
GCAGCAGCAGCAAGAACAGGACCACGGTAGAAGGCACAGCAGCAGCGACC
GCCGCCAACCCCGCGGAAGAGGTCGCGAGAGGCCTCGAGGCGCTCGAGGC
GGTCGCCATCGCGGCCAAGACCTCCTCCAGCCGATCGCCCCCGGGGACTC
GGAACGGCTCGTTCTCGTCAACAATCGGCGGCGGCGAATTCACGCCACTG
CGGTCGGCGGACTCTTGGCACACCGTGGAGGCCTCAGACCCGCCGGTGGG
CTGGAGGCGGAGAGGGCGGAAGGAGGGGAGAGGGATGGCGGCTCTCAAGA
GCGTGGCCGGGTCGCAGGGTTCGTCGCTGCTCCACAACAGTAGCGCTTCC
GCCGCGGCCGGCGGCGGCGTCGGCGGCGGCACTTCTTCTCTGCCGTTAGC
GGAGTTTCCTCAGCCGCGGTCGAGCTCGCCCCCGCCCCCGCCCGCGGGGC
TATCACTCGTCCGCATCAACAGCGACGCCTCGACGAACAGCGGCGCTGGC
TTCGGCGCCTCCACCACCCGGAGCAGCTCCGAGTTCTCTACCTCCCCGGC
GGTTGCCGCCACGGGTGGGAATGCAGCCGCAGGCGGTAGCAACTCCTCCT
CCGCCGACAACTCGCCGGAGATGAGGTTCAACAAGTCGAGGGACTCGGTG
CTGATGCTGAAATCAGCCCCCGGGGTCTTTCGGAGCAGGAAGGCGAGGAC
CGGATCTGCTGCTGCTGCCGCCGCTCCTGCGGTGGCGGAAAACGCCTCCC
ACGGTGGGAGCAAGACCAATGACACGATCGCCGCTGCCCGCCGGAGCCTC
CGTAGGACGGGGTCCCTCCCCGTGGTCGACGCCGCCAACAACGATAACGC
CTCCGCGGCGGTGGCGGCAGCGGCGGGGTCGACGGATGCTCCAGACAAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGAAGCGCTCCTCT
TCTTCCTCCTCGTTGACCAAGAAGAAGCAGATGTCCCCTCGCGCGAAAGG
GTTCAACGCGATCATGTTTCACGAGAGCTTCACGCCCGTCAACACCGAGG
CCGGCGCCGACCGGACCAAGAAGCCGCAGCGAGGTTGGTGGGTGAAAGAG
AACAACCACCACCCTCTATCGCCACCGCCAGTACTGTCGAACCCCCCTCG
TCCGCTTGCCCCTCCGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGAGGCAGCAACAACAACGGCAGCAGGCCGGCGAGGGTGTC
GTCGTCGTCGCCGAAGACCCCCGGCCTGCGCGGGGTGGCGGTAGCGGCGC
CAGGCGGGTCGGCGAGAGCGTCGCTGCAGTCACGAGAGGAGGAAACAGCA
TCGCGGCCGAGAACGAACAGCTCAAGCTGGAGAGCAAGCGGCTCGCGAGC
GCGCTGTCTACGGCGAGGGAGAGCGCGGAGATGACGGAGGAGAGGTCCAG
GGTGCTGGCCAAACAAGCGACTTTGCGGGTGAGCGGCAGAAAAGGAAAGA
AGGAATCATCACAA
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