mRNA_E_fasciculatus_S2_contig7449.15623.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7449.15623.1
Unique NamemRNA_E_fasciculatus_S2_contig7449.15623.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7449.15623.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI4_ECTSI)

HSP 1 Score: 585 bits (1509), Expect = 5.090e-199
Identity = 283/301 (94.02%), Postives = 291/301 (96.68%), Query Frame = 1 
Query:   22 GDAYPVTESMVADGLGTMITSLFGSPFGTVMYFGHPAYKKSGAKTGYSLINGLLYLFLSWFGLVALIRSIVNQPTIGPIVLFVGLMLLEECFRFLPPRHYAAVLFGLFPSIADWVTNIAARGPLAGVAEDGTDYNTNLPDLTEGWWGILGLKRGAILVSLCWVAMLVHIIDRKWWQASVWAVISAGFTAVGIIHVPVAGFDDFTSTVGDLCTPVTDDLGVATTATCWDHADQWHYMTAYLIMAVVFVAIEGLRRAGVGNLDEPILTEEADAFKDWYGNESLTTAPKIEGDKPAAVVAVPMA 924
            GDAYPVTESMVADG+GTMITSLFGSPFGTVMYFGHPAYKKSGAKTGYSLINGLLYLFLSWFGLVALIRSIVNQPTIGPIVLFVGLMLLEECFRFLP RHYAAVLFGLFPSIADWVTNIAARGPLAGVAEDGTDYNTNLPDLT+GWWGILGLKRGAILVSLCWVAMLVHIIDRKWWQASVWAVISA FTAVGIIHVPVAGFDDFTSTVGDLCTPVTDDL V TTA+CWDHADQWHYMTAYL+MAVVFVAIEG+RRAGVGNLDEPILTEEADAFKDWYG+E  TT PK+E DK  AVV+VPMA
Sbjct:  290 GDAYPVTESMVADGVGTMITSLFGSPFGTVMYFGHPAYKKSGAKTGYSLINGLLYLFLSWFGLVALIRSIVNQPTIGPIVLFVGLMLLEECFRFLPARHYAAVLFGLFPSIADWVTNIAARGPLAGVAEDGTDYNTNLPDLTDGWWGILGLKRGAILVSLCWVAMLVHIIDRKWWQASVWAVISACFTAVGIIHVPVAGFDDFTSTVGDLCTPVTDDLEVVTTASCWDHADQWHYMTAYLMMAVVFVAIEGVRRAGVGNLDEPILTEEADAFKDWYGDEPPTTGPKVEEDKSVAVVSVPMA 590
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7449.15623.1 vs.
Match: Putative (MFS transporter, AGZA family, xanthine/uracil permease n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0X1_FISSO)

HSP 1 Score: 309 bits (791), Expect = 1.100e-90
Identity = 155/294 (52.72%), Postives = 200/294 (68.03%), Query Frame = 1 
Query:    1 IVICLDTGDAYPVTESMVADGLGTMITSLFGSPFGTVMYFGHPAYKKSGAKTGYSLINGLLYLFLSWFGLVALIRSIVNQPTIGPIVLFVGLMLLEECFRFLPPRHYAAVLFGLFPSIADWVTNIAARGPLAGVAEDGTDYNTNLPDLTEGWWGILGLKRGAILVSLCWVAMLVHIIDRKWWQASVWAVISAGFTAVGIIHVPVAGFDDFTSTVGDLCTPVTDDLGVATTATCWDHADQWHYMTAYLIMAVVFVAIEGLRRAGVGNLDEPILT----EEADAFKDWYGNESLTT 870
            +V   + GD +PV ESM+ADG+GTMI S FGSPFGTV+Y GHPA+K+SGAKTGYS+ NGL+Y  LSWFG++A I+SIVN  TIGPIVLFVGL + EEC  F+P RHYAA + GLFPSI DWV N++ R PL   A    D NTN P   +GW+GIL  KRGA+LVS  WVA+LV +IDR+W +A+ W++++AGF+  GIIH+P AG +  +    + C             +CW+H +QW Y  AYL+ A +FV IE  RR+G   LDE +L       +D FKDW+ +   TT
Sbjct:  392 LVSAKNAGDPFPVRESMIADGIGTMIASFFGSPFGTVIYIGHPAHKRSGAKTGYSMANGLIYFILSWFGILAFIQSIVNVATIGPIVLFVGLAINEECLNFIPSRHYAAYIVGLFPSIFDWVVNVSNRSPLGNDA----DGNTNFPG-GDGWFGILAWKRGALLVSFVWVAILVSVIDRQWNKATFWSLLAAGFSLFGIIHMPEAGLEKLSEPFWEQC---------PAGGSCWEHGEQWMYFVAYLMFAGIFVLIELARRSG---LDEQLLPGLEDPTSDEFKDWFRDAEKTT 668
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7449.15623.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZC90_9STRA)

HSP 1 Score: 275 bits (704), Expect = 1.220e-78
Identity = 135/283 (47.70%), Postives = 187/283 (66.08%), Query Frame = 1 
Query:    1 IVICLDTGDAYPVTESMVADGLGTMITSLFGSPFGTVMYFGHPAYKKSGAKTGYSLINGLLYLFLSWFGLVALIRSIVNQPTIGPIVLFVGLMLLEECFRFLPPRHYAAVLFGLFPSIADWVTNIAARGPLAGVAEDGTDYNTNLPDLTEGWWGILGLKRGAILVSLCWVAMLVHIIDRKWWQASVWAVISAGFTAVGIIHVPVAGFDDFTSTVGDLCTPVTDDLGVATTATCWDHADQWHYMTAYLIMAVVFVAIEGLRRAGVGNLDEPILTEEADAFKDWY 849
            +V   + GD +PV E+M++DG+GT I+S FGSPFGTV+Y GHPAYK+SGAK GYSL+NG+ YL  SWFG++ALI+SIVNQPTIGPIV FVGL + EE   F+P R YAA + GLFPS+ DW+ N++AR PL    +D   Y+ +    +  W G+L  K G++LVSL W ++LV++IDR+W  A++W+VI++ F   GIIH   AGF +F S     C             TCW++++QW   TAYL++A  FV +  + +     + +PI  E   AF DW+
Sbjct:  318 LVSAKEAGDPFPVRETMISDGVGTCISSFFGSPFGTVIYIGHPAYKRSGAKAGYSLVNGVTYLIFSWFGILALIQSIVNQPTIGPIVFFVGLQVNEEALNFMPSRQYAAYIIGLFPSVYDWLVNVSARSPLI---DDTFSYDISSVQ-SPTWMGVLNWKNGSLLVSLLWTSILVNVIDRQWVSAAIWSVIASLFAVFGIIHSFSAGFSNFNSPSWQYCWDAD--------GTCWEYSEQWMEFTAYLMVAATFVILHFVSKHDE-QMKDPIDDESRHAFDDWF 587
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7449.15623.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EKF1_9STRA)

HSP 1 Score: 273 bits (699), Expect = 3.780e-78
Identity = 136/283 (48.06%), Postives = 183/283 (64.66%), Query Frame = 1 
Query:    1 IVICLDTGDAYPVTESMVADGLGTMITSLFGSPFGTVMYFGHPAYKKSGAKTGYSLINGLLYLFLSWFGLVALIRSIVNQPTIGPIVLFVGLMLLEECFRFLPPRHYAAVLFGLFPSIADWVTNIAARGPLAGVAEDGTDYNTNLPDLTEGWWGILGLKRGAILVSLCWVAMLVHIIDRKWWQASVWAVISAGFTAVGIIHVPVAGFDDFTSTVGDLCTPVTDDLGVATTATCWDHADQWHYMTAYLIMAVVFVAIEGLRRAGVGNLDEPILTEEADAFKDWY 849
            +V   + GD +PV ESM+ DG+GT I S FGSPFGTV+Y GHPAYK+SGAK GYSL NG+ YL  SWFG++ALI+SIVNQPTIGPIV FVGL + EE   F+P R YAA + GLFPS+ DW+ NI+ R PL+   +D   Y+ +    +  W G L  K G++LVSL W ++LV++IDR+W  A++W+VI++ F   GIIH   AGF +F+S     C              CW++++QW   TAYL+MA  FV +  + +     + +PI  E   AF DW+
Sbjct:  321 LVSAKEAGDPFPVRESMIVDGIGTCIASFFGSPFGTVIYIGHPAYKRSGAKVGYSLANGVTYLLFSWFGILALIQSIVNQPTIGPIVFFVGLQVNEEALNFMPNRQYAAYIIGLFPSVYDWLVNISGRSPLS---DDTFSYDISSAG-SAAWMGALNWKNGSLLVSLLWTSILVNVIDRQWVSAAIWSVIASLFAVFGIIHSFSAGFTNFSSVPWQYC--------YGGDGFCWEYSEQWMQFTAYLMMAATFVILHFISKYD-DQMKDPIDDESRHAFDDWF 590
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7449.15623.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3Q3_9STRA)

HSP 1 Score: 167 bits (424), Expect = 5.610e-44
Identity = 88/195 (45.13%), Postives = 119/195 (61.03%), Query Frame = 1 
Query:  244 TIGPIVLFVGLMLLEECFRFLPPRHYAAVLFGLFPSIADWVTNIAARGPLAGVAEDGTDYNTNLPD-LTEGWWGILGLKRGAILVSLCWVAMLVHIIDRKWWQASVWAVISAGFTAVGIIHVPVAGFDDFTSTVGDLCTPVTDDLGVATTATCWDHADQWHYMTAYLIMAVVFVAIEGLRRAGVGNLDEPILTEE 825
            TIGPIVLF+GLM+ EE  R + PRHY+A + GLFPSI DW   ++ R P+        D N  L D + + ++G+L  K+G++L+SL WV ML+++IDRKW  A+VWA I A F A GIIHVP AGF+ F +   + C    +         CW + +QW Y  AY+IMAV F+AIE +R      +  P LT E
Sbjct:    2 TIGPIVLFIGLMINEEALRCINPRHYSAFIVGLFPSIYDWAVIVSGRSPIIV-----NDVNVALDDNVFDNFFGVLAWKQGSVLISLIWVCMLMYVIDRKWLSATVWATIGALFAASGIIHVPKAGFESFVAPESEQCRSEEE---------CWQYGEQWMYFLAYIIMAVTFLAIEIIRSFVDDEMLLPPLTNE 182
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7449.15623.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UIB7_9STRA)

HSP 1 Score: 165 bits (417), Expect = 7.450e-43
Identity = 90/209 (43.06%), Postives = 120/209 (57.42%), Query Frame = 1 
Query:  277 MLLEECFRFLPPRHYAAVLFGLFPSIADWVTNIAARGPLAGVAEDGTDYNTNLPDLTEGWWGILGLKRGAILVSLCWVAMLVHIIDRKWWQASVWAVISAGFTAVGIIHVPVAGFDDFTSTVGDLCTPVTDDLGVATTATCWDHADQWHYMTAYLIMAVVFVAIEGLRRAGVGNLDEP-ILTEEADAFKDWYGN-----ESLTTAPKIE 885
            M+ EE    +P RHYAA + GLFPS+ DWVTN+   GP+      G    T LP     W+G+L  KRGA+LVS  WVAMLV +IDRKW +A+VW+ + A F   GIIHVP AGF +F + V + C        V++   CWD A+Q+ +  AYL++   F  IE  R  G+ +   P I+ EE  +F DWY N     E  T +P+ E
Sbjct:    1 MINEEALNSMPSRHYAAYVIGLFPSVFDWVTNVTNTGPIQDFESGGNINLTGLPQ----WFGLLAWKRGALLVSFVWVAMLVSVIDRKWKKAAVWSTMGALFALFGIIHVPEAGFANFATPVWEQC--------VSSPGNCWDFAEQYMFFVAYLMLTGTFALIEVARSMGLDDTLLPAIVDEEGVSFGDWYANADKIIEMSTHSPREE 197
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7449.15623.1 vs.
Match: Hypothetical (protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A814EYH1_ADIRI)

HSP 1 Score: 170 bits (430), Expect = 3.990e-41
Identity = 101/287 (35.19%), Postives = 153/287 (53.31%), Query Frame = 1 
Query:   22 GDAYPVTESMVADGLGTMITSLFGSPFGTVMYFGHPAYKKSGAKTGYSLINGLLYLFLSWFGLVALIRSIVNQPTIGPIVLFVGLMLLEECFRFLPPRHYAAVLFGLFPSIADWVTNIAARGPLAGVAEDGTDYNTNLPDLTE-----GWWGILGLKRGAILVSLCWVAMLVHIIDRKWWQASVWAVISAGFTAVGIIHVPVAGFDDFTSTVGDLCTPVTDDLGVATTATCWDHADQWHYMTAYLIMAVVFVAIEGLRRAG-VGNLDEPILTEEADAFKDWYGNESL 864
            GD YP  ESM ADG+GT+I+SLFGS  G  +Y GHPAYKK GA+  YS+IN L+YL L +FG++A+   I+    + P+++F+GL +  E     PPRHY A L G+ P IADWV      G  +  +          P++T       + G+     G++L  +   A+L++IIDRK+ +A +W+++++  +  G+IH         +STVG L    T D             D W +  AY ++AV+FV  E  +R G V   +       +D +K+W    +L
Sbjct:  332 GDLYPTRESMFADGVGTIISSLFGSFLGMTVYIGHPAYKKMGARQAYSIINCLIYLPLCFFGIIAIFLRIIAVVAVNPVIIFIGLFICAETLTITPPRHYPAFLLGIMPVIADWVRATIINGVSSAYSNFSIPNVQFAPNITSRITDFSYRGLENFAGGSLLQCIFLTAILMYIIDRKFVRAMIWSLLASLLSFFGLIH---------SSTVGVLYR--TRD-------------DGWQFTVAYCMLAVIFVLFEVAQRKGWVREPENEPDDLSSDEWKEWNKKRTL 594
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7449.15623.1 vs.
Match: Hypothetical (protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WT88_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.370e-40
Identity = 104/310 (33.55%), Postives = 158/310 (50.97%), Query Frame = 1 
Query:   22 GDAYPVTESMVADGLGTMITSLFGSPFGTVMYFGHPAYKKSGAKTGYSLINGLLYLFLSWFGLVALIRSIVNQPTIGPIVLFVGLMLLEECFRFLPPRHYAAVLFGLFPSIADWVTNIAARGPLAGVAEDGTDYNTNLPDLTEGWWGILGLKRGAILVSLCWVAMLVHIIDRKWWQASVWAVISAGFTAVGIIHVPVAGFDDFTSTVGDLCTPVTDDLGVATTATC--------------------WDHADQWHYMTAYLIMAVVFVAIEGLRRAGVGNLDEPILTEEADAFKDWYGNESLTTAPKIEGD 891
            GD YP+ E++VADG+GT+I SL G+PF T +Y GHPA KK GA   YSLIN  ++ F   FGL +L  +I+    + P++LFVG+M+ +E       R Y A + GLFP++ADW T         G    G+ Y           +G + + + ++L+SL   + LV+IIDRK+ QA+ W +ISA F+  GIIH   A   ++       C     ++ +  T TC                    W+   +W + T Y + AV+ +   GL+R  +  + +PIL  EAD     +  E L +  K + +
Sbjct:  323 GDKYPLREALVADGIGTIIGSLAGTPFPTSVYIGHPAIKKMGAGVVYSLINCFVFFFFGMFGLFSLALAIIPMTAVAPLLLFVGMMICQEAIASASVRMYPAYMIGLFPALADWATQSGVDHGSVG----GSHY-----------FGYVAMSKSSLLLSLLVTSTLVYIIDRKFLQAAAWCLISALFSVFGIIHQNAASVKNYNQPQSVYCV----EVYLPNTTTCPTGYTECGPNFANGRLNFCGWEATQKWRFATGYAMCAVMLLGFYGLQR--LDKVAQPIL--EADPTAKSHVTEILDSMKKNDAE 609
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7449.15623.1 vs.
Match: Hypothetical (protein n=5 Tax=Adineta steineri TaxID=433720 RepID=A0A816EH99_9BILA)

HSP 1 Score: 168 bits (426), Expect = 1.500e-40
Identity = 94/259 (36.29%), Postives = 138/259 (53.28%), Query Frame = 1 
Query:   22 GDAYPVTESMVADGLGTMITSLFGSPFGTVMYFGHPAYKKSGAKTGYSLINGLLYLFLSWFGLVALIRSIVNQPTIGPIVLFVGLMLLEECFRFLPPRHYAAVLFGLFPSIADWVTNIAARG---PLAGVAEDGTDYNTNLPDLTEG--WWGILGLKRGAILVSLCWVAMLVHIIDRKWWQASVWAVISAGFTAVGIIHVPVAGFDDFTSTVGDLCTPVTDDLGVATTATCWDHADQWHYMTAYLIMAVVFVAIEGLRR 783
            GD YP  E+M ADG+GT+I SLFGS  G   + GHPA+KK GAK GYSL NGL +L L +FG+ AL+ SI+   ++ PI++F+GL++  +     P RHY A LFGL P IADW       G         ++ TD+N N+     G  + G+L    G++L  +   A+ ++IIDRK+ +A  W++++A F   G+I+    GF                            + D W +   Y +MA++FV  E  +R
Sbjct:  349 GDFYPTREAMFADGIGTLIASLFGSILGMTTFIGHPAFKKMGAKQGYSLANGLAFLPLCFFGINALLVSIIAIVSVNPIIIFIGLVICADTLSITPRRHYPAFLFGLMPIIADWTQGTIISGVNDAYKNFIQNHTDFNQNISSHITGFSYHGLLNFSGGSLLQCIFLTAIFMYIIDRKFLRAMFWSLLAAIFALFGLINASSVGF------------------------LIHKNDDGWKFSVGYGMMAILFVCFEFAQR 583
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7449.15623.1 vs.
Match: Hypothetical (protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815XK08_ADIRI)

HSP 1 Score: 168 bits (425), Expect = 1.910e-40
Identity = 99/260 (38.08%), Postives = 145/260 (55.77%), Query Frame = 1 
Query:   22 GDAYPVTESMVADGLGTMITSLFGSPFGTVMYFGHPAYKKSGAKTGYSLINGLLYLFLSWFGLVALIRSIVNQPTIGPIVLFVGLMLLEECFRFLPPRHYAAVLFGLFPSIADWVTNIAARGPLAGVAE---DGTDYNTNLPDLTEG--WWGILGLKRGAILVSLCWVAMLVHIIDRKWWQASVWAVISAGFTAVGIIHVPVAGFDDFTSTVGDLCTPVTDDLGVATTATCWDHADQWHYMTAYLIMAVVFVAIE-GLRR 783
            GD YP  E+M ADG+GT+I SLFGS  G   + GHPA+KK GAK GYSL+NGL ++ L +FG+ AL+ SI+   ++ PI++F+GL++  +     P RHY A LFGL P +ADW       G     ++   + TD++ N+  L     + G+     G++L  +   A+ ++IIDRK+ +A  W++I+A F+  G+I           STVG L     DD             D W +  AY +MAV F+ +E G RR
Sbjct:  349 GDFYPTREAMFADGIGTLIASLFGSILGMTTFIGHPAFKKMGAKQGYSLVNGLAFIPLCFFGINALLLSIIAIVSVNPIIIFIGLVICSDTLSITPSRHYPAFLFGLMPVVADWAKGTIVSGVTNAYSKFLPNNTDFDGNISSLITSFSYRGLSNFSGGSLLQCIFVTAIFMYIIDRKFVRAMTWSLIAAIFSLFGLIDA---------STVGLLIHE--DD-------------DGWKFTVAYSMMAVFFLCLEFGQRR 584
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7449.15623.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized5.090e-19994.02protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI4... [more]
Putative1.100e-9052.72MFS transporter, AGZA family, xanthine/uracil perm... [more]
Uncharacterized1.220e-7847.70protein n=1 Tax=Pseudo-nitzschia multistriata TaxI... [more]
Hypothetical3.780e-7848.06protein n=1 Tax=Pseudo-nitzschia australis TaxID=4... [more]
Hypothetical5.610e-4445.13protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
Hypothetical7.450e-4343.06protein n=1 Tax=Attheya septentrionalis TaxID=4202... [more]
Hypothetical3.990e-4135.19protein n=2 Tax=Adineta ricciae TaxID=249248 RepID... [more]
Hypothetical1.370e-4033.55protein n=1 Tax=labyrinthulid quahog parasite QPX ... [more]
Hypothetical1.500e-4036.29protein n=5 Tax=Adineta steineri TaxID=433720 RepI... [more]
Hypothetical1.910e-4038.08protein n=1 Tax=Adineta ricciae TaxID=249248 RepID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7449contigE_fasciculatus_S2_contig7449:93..7193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score567.0
Seed ortholog evalue5.1e-159
Seed eggNOG ortholog2880.D8LHI4
Model size2318
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.purine nucleobase transmembrane transporter activity
EggNOG OGs2QRYA@2759,COG2252@1
Cds size879
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7449.15623.1prot_E_fasciculatus_S2_contig7449.15623.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7449 141..5802 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842407.627703-UTR-E_fasciculatus_S2_contig7449:92..1401696842407.627703-UTR-E_fasciculatus_S2_contig7449:92..140Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7449 93..140 +
1696842407.7403562-UTR-E_fasciculatus_S2_contig7449:5802..71931696842407.7403562-UTR-E_fasciculatus_S2_contig7449:5802..7193Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7449 5803..7193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842407.6432505-CDS-E_fasciculatus_S2_contig7449:140..2561696842407.6432505-CDS-E_fasciculatus_S2_contig7449:140..256Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7449 141..256 +
1696842407.6594408-CDS-E_fasciculatus_S2_contig7449:963..11571696842407.6594408-CDS-E_fasciculatus_S2_contig7449:963..1157Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7449 964..1157 +
1696842407.668167-CDS-E_fasciculatus_S2_contig7449:1594..16941696842407.668167-CDS-E_fasciculatus_S2_contig7449:1594..1694Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7449 1595..1694 +
1696842407.6769724-CDS-E_fasciculatus_S2_contig7449:2263..24141696842407.6769724-CDS-E_fasciculatus_S2_contig7449:2263..2414Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7449 2264..2414 +
1696842407.6971834-CDS-E_fasciculatus_S2_contig7449:3524..35781696842407.6971834-CDS-E_fasciculatus_S2_contig7449:3524..3578Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7449 3525..3578 +
1696842407.710579-CDS-E_fasciculatus_S2_contig7449:4137..42101696842407.710579-CDS-E_fasciculatus_S2_contig7449:4137..4210Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7449 4138..4210 +
1696842407.71916-CDS-E_fasciculatus_S2_contig7449:4910..50191696842407.71916-CDS-E_fasciculatus_S2_contig7449:4910..5019Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7449 4911..5019 +
1696842407.7284174-CDS-E_fasciculatus_S2_contig7449:5720..58021696842407.7284174-CDS-E_fasciculatus_S2_contig7449:5720..5802Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7449 5721..5802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7449.15623.1

>prot_E_fasciculatus_S2_contig7449.15623.1 ID=prot_E_fasciculatus_S2_contig7449.15623.1|Name=mRNA_E_fasciculatus_S2_contig7449.15623.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=293bp
MVADGLGTMITSLFGSPFGTVMYFGHPAYKKSGAKTGYSLINGLLYLFLS
WFGLVALIRSIVNQPTIGPIVLFVGLMLLEECFRFLPPRHYAAVLFGLFP
SIADWVTNIAARGPLAGVAEDGTDYNTNLPDLTEGWWGILGLKRGAILVS
LCWVAMLVHIIDRKWWQASVWAVISAGFTAVGIIHVPVAGFDDFTSTVGD
LCTPVTDDLGVATTATCWDHADQWHYMTAYLIMAVVFVAIEGLRRAGVGN
LDEPILTEEADAFKDWYGNESLTTAPKIEGDKPAAVVAVPMA*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7449:93..7193+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7449.15623.1 ID=mRNA_E_fasciculatus_S2_contig7449.15623.1|Name=mRNA_E_fasciculatus_S2_contig7449.15623.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=7101bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7449:93..7193+ (Ectocarpus fasciculatus EfasUO2)
ATCGTGATATGCCTCGACACAGGTGATGCGTATCCCGTGACCGAGAGCAT
GGTCGCCGACGGTCTCGGCACCATGATCACCTCGCTGTTCGGGTCCCCCT
TTGGCACGGTCATGTACTTCGGACACCCCGCCTACAAGAAGTCGGGCGCC
AAGACCGGCTACAGGTGGTGATGCGGTGCTGTAACTTCTGCACTTTCTCT
CTCTACCGTTGTTGTTGTATGTGTTGTTGTTGGTTTTGATGTTGCTGTTG
CTGTTGCTGTCCGGTTCCGAAGGCAGTCGTTCTTCATACCACGCGAATTT
GGTGAACGTGGTGGCGTGTGTTGTCGAAGACGGCCCTACGTCTTTTCGAG
ATTCCGTTGAATGTTTGCCGGAAAAGTGACAATAGGTTCTCGGCGGTAGG
TGATCGGAGAGCTATCCGAGGCCGGGGCGGCATCTGAGCAGGATCTTCTG
GAGGATAATTCAGTTGACCGAAGACACGAAAAATCGTCGTCGAACACCGC
TAACCATGGTCCCGATTCCCTTCTCTGTGTGTCTGTGTATGTCTCTCTCG
TTTCTCGTCATTCTCCTTCTCCCCTACTCCCCCGTCATGGTATTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCTT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCC
CTCCCTCCCTCCTCCTCTCGCTCTCCGTCTCTATCTTTGTCTCCCGCTCT
GTCTCCCTCTGTCTCCCACAACACGTGGCAACAACAACACCCACGCCGGC
ACGATTACCCCAATACAACAGCCTCATCAACGGCTTGCTCTACCTTTTCC
TGTCATGGTTCGGCCTCGTCGCCCTCATCCGCTCCATCGTCAACCAGCCC
ACCATCGGGCCCATCGTACTGTTCGTGGGACTGATGCTTCTGGAAGAGTG
CTTCCGCTTCTTACCCCCCAGGCATTACGCCGCTGTGCTCTTTGGGCTCT
TCCCTTCCATCGCCGGTGAGTGCCACTGGGAAAGGGTGTGTTGCTGCAGC
TCTCCTTCGGCACTGTTCCTAGTAACTTCTCTGACGGCCAGCTGTGATGG
AAAACCACATGGACGGTGAATACCCCATAGCCCATAACAGTGCAGATGCG
ATGTCGGGTAACAATGATTGCGGGCGGGCGGCAGGATAAATAACTACTGC
AAACGTATTACCACAAAGTTAAGTACGAAGTCGAAAGCGGATCTGATGAA
CGAATCAAGGTGAACGGAGGAATATTCTATATATCGCAGCCGATTTTGTA
TTTCTTTTGTCCCCCGAGTTTGCATGTGAAACCTCGCCGCTGTACAAATT
TGACAGCGTTTTTCCGAGTCCCGTCTCAAGACAGCACTTCTAAGAAAACT
AAGAGTCATCCTCACGATACTGCTTGTTCCTCACCCCCCATCTCACGCCC
AGACTGGGTGACCAACATCGCCGCTCGCGGACCTCTGGCCGGCGTCGCCG
AGGACGGTACCGACTACAACACCAACCTGCCCGACCTCACCGAAGGGTGG
TGGTGAGTAGGGCACGAGCGAGCAACTCTCGTGTTCTTCAAGACGAAGGA
AGTGTCTTGTTTTTGCTCTGTTGTTGCAGAGGGAATTAAACTGAACTTTG
TGTTGGAGAGGCGTTCCGTTTGGGTGCATCACCGAGTTGTCCCCCGATAT
GCGCAGCGCAGCGCAAGAGTACAAGTTGCAGCGGAGAGAATGCGGCAAGG
GGGATGGAGATACCTACTACTATTGTGGCCAAACGGCTATCCAACGCCCA
CACCTGTCCGCGTTCTCTTTGAAATGTGGTGGCGGTGAGCAAGACACGCG
GCTAGCTGTGTTTGAGGGTTGCTTCTGAATCCAAAGGCAGGGTTCATTGG
CCGTTGCCGTTCCTACGCAGGTCTAGGGTGTGAAAGGAAGTGATCGCGGA
AAATCGACTTCTACTGCAAACACAGCAGCAGCTGCTGCGCAACAAGAGCA
GTAGCAGCAACACCGACACCGATAGCAACAGCCAGCAGCACCGACAGTGA
CCACTCACAGCTTCATCAACAACGACGTTTGGCACGCCTTTCTCGTTTCC
TTCTACCTGAACCAATCTCAGGGGCATCCTCGGCCTCAAGCGCGGGGCTA
TTCTGGTGTCTCTCTGCTGGGTTGCCATGCTCGTACACATCATCGACCGC
AAGTGGTGGCAGGCGTCGGTCTGGGCAGTCATATCGGCCGGCTTCACCGC
AGTCGGCATCATTCATGTTCCGGTGAGCCCCCCGCCTATGAAAAAAATCG
TTGCGGTCACTCTTCTCGTTAGGATGCCACTCTGACCTTTAGCAATGAAA
CAGAATGGTGACAGAGCAGTAGTAGATGAGCACATGCGGTCGGAGGCAGG
CCGCGATGCAATTGAATTGCGACAACATTCAACACGATTAATATATATAT
GGGTGTGTTTTATTAATTAATTGTTTTTGTTTTGGGTATGGGGTGTGTTA
TTTATTTTTTGGTTTTGGGGAGACAATATGCCTTGCAGCGTCCCAGACTG
TACTGCAACGAACGTCCGTGATTTCCGCGGTAGGTCTCACAAGCCAGCAC
ATTACATCCCGGAAACCGGTACAGACAGCAGTAGGCGATATTGTGTAGGT
GGAAAGGCCGCGGTTAGTTTTTCATGATTTGCAAGAAGGTCGACGCCTGC
CACCACCAACAATTGATGGGCTTCACGACCACCGTCACACGTGATGGTCT
ACCGCTTGTGTTCGAACCCCCCCCACGGAATGCGATCATGTTGGCGTGTG
AGGCTTGCTGTACCCTGCCCCAGTCCCCAGTCGTCGGTGAAGCCCCTTCC
GACGAAGATCTCCGTCCGGACCGCCTTCGCGAGGGTTATTATTAATATAT
GAAATAGAGAGGGGGTTGTAATCCTAACCCCAACCCCCAGCCCCACCCCG
TAACCGTTACTAAAACCAAGCTTATTCTCGCGAAGGCTACTGCTCCGTCC
TGGGGTTGTACGGAAAGGCGGAGAAGGGTCTGGTCTGAGAGAAAGATAGG
GAGAGACGGAGAAAGACAGACAGACAGACAAAGACAGAGAGAGCGAGCGA
GAGAGACATAGGAGGAGGCAAAAAACAGAGACAAAACCAGAAGTACAGAC
GAAGACGCAAAGAGAGAGAGAGACCGAGACAGACAGAGATTGAGGCAGAC
CGACAGAGAGACAGACAGACAGAGACAGAGGGGCAGGGGGGCGATGCTGC
CAACTGACGATGATGACACGCGTTCACGCACACGTCACGGCCAACATGGT
CCGACGACGATCAAGCAAGACACAAAACAAAAGACTGCCCTCCCCTCCAT
CTTGCTCTCTGTCCTATTCTTGTGATGTTCAGGTGGCCGGATTCGACGAC
TTCACCTCTACCGTGGGCGACCTGTGTACTCCCGTGGTGAGTCACTCACG
CACTTTCTAACCCTACACTCGTTTTTGAGGGTAGCCGGGTGAACTAGTTT
GATAGATGATGGGGGGTCTCAATTGCGCTCCGATGAGTACAGTCTGTGCC
AAGGGCTGTAAAACGTGGGGCTGGTCACTCTCAGGTTATTGTCATGGCCA
AAGTTGAGACAGCACAGCATGTACGTTCGTGTTTTTGTCAAGTATTGCTC
ACTGTGACTGTCGATCGGTCTTCCCCCAACACATTCGATACCACCACAAT
TTTGTACTCATCCCTAAGAAAAGAGTGTGTTGTCTTATCGACAACAGACG
TCAACGTGGAGCTTCTTGCTTGCACTTAACCCGCGCGCTACCTTTAGGTG
GCGACCGACCTCACTTTGCCAGGTGCAATGTTCAACAAAAAACGACCGAT
TCCCTTGTTTTGCTGACAAAGCAGCGGCACTGCTGTGGTAAATAGCAGAC
GCGCTTCAAGACGTCAACACACGAGCTTGTCACGGATGCTTCTTCACAGA
ATGGTCGAAGATAACCCCCCCCACCCCCCCCGTTCTGTTTCTCAGACCGA
CGATCTCGGAGTGGCGACCACGGCCACCTGCTGGGACCACGCAGACCAGT
GGCACTACATGACCGCATGTGAGGAACATTAAGAAATACGTGGCACATTG
TAGGAAAACGGTGAAGATCCCATGGTTTTAGACCGTACGGGCGTGCGGCA
GATGTAAACATCAGCGCTGTACGGTAAGCGAGGAACCAAATTGAACACGG
TACAGACTAAACAATCCCGCGTTCGCAAACACGTTACCAAACCCGCTCGT
CCCTTTGGGGGAGGGTAAAGTAACTCCACCCGATTCCTCCACGTTGCGCT
GAATAGAGCTCTAGGGATTCAACGTAGACATGAACGATGTACTGCGAGGG
TGTGATGAAGAAAACCTGTCTCCACTTGAGGGAGGCTTTCGGAACGCGTC
GAGTAGCACACTTCACAAGCTCTTTAGCTGCTTTCCTCCTGTCCATTCCA
TTTGTCTTTGCCCGTCCTCATTGTGCTGCAATGGCGAAGAGAGTCAGACA
CTCGACTACAAACATGTGCTTCTGAGACCGATAAAACATTCGTTTTGTTC
GACGGATCGACGCAACAAGACGCGGGAGTTTCAGCAACCCTGGTGCTCAG
TTTCGACCCACAGCGCGGTGCCGCTGTCCCGTTCTCTCTCAACAGTACAT
TTCTCACCTCGCCTTTTCCTCGCACCTGTACGTTCGCTACAAACGTTCTT
GTCTGCGGCGGCCCGACATCATCACCTCCAAACACATCCAACGAAACACA
TCTAACGAAATCGATCAGATCTCATAATGGCGGTGGTTTTCGTCGCCATC
GAAGGCCTCAGGCGGGCTGGCGTGGGGAACCTCGACGAGCCCATCTTGAC
CGAAGAGGCGGATGCCTTCAAGGACTGGTGAGCCTAATAGCGTCTCAGCG
CCACCTGTTGTTGTTGTTTTCTACCGTGTTGCGGTCTGCGTGCGTGTACT
CGTTCCCAAGCATGGCAATCAATAAAAAGTGGTGGTTTCCGTGTACCACG
GTTATTACCTCTTTTTCCCTGGGGAAGTCACTGGCGTTTCTTGATTGAAG
GAGACGAAACTCGTCGTGGATACGCTTTGTGGTGGACTTGGCTAGCAGTG
AGAAATGGCTGTTCGACGACGAGGTTGTGGTCAGCACTGAAGATAAAACG
GAATGTATTGCCCTTCTCTCTGTTTTCTTTCCGTTTTTAGACCAGAAAAT
TCTGACCGAGCCAACCGTAACCACTTCTCGTGGCAACGATTGAACACTGT
TGACGGGTACATAACCACGCCGGCTTGAGTGGTTGTAACCGTTTAAAGAT
TCATTTTTTAAGTTTCGACGGGGTTTTCATGTATTTGTTGGAAACGTCAC
AGGAAATAACACATTGTAAAAATTGAAACAGCATGTACTGTCCGTTGTGG
CTTTGGTCGTGGCTATTGAGAAGCGGCTTTGATATTTCGCCGCGCGCCCA
CAACACGTCAAACTACTTTACTCCCCCGGTATACCACACACCTAAGCTGT
CGACGCTGTCATGGTTTGTGGCCGGTATCCTTTTGTTGGTGTCTTGCGTG
TGTTGTTGCTTTTTGCCCATCCTCTCAGGTACGGCAACGAATCTCTCACT
ACCGCCCCCAAGATCGAGGGAGACAAGCCTGCCGCTGTGGTCGCCGTTCC
TATGGCCTAAGTGTCCTTGTTTTGTTCTATTTCTCTGGAAGAAGGAAGGG
TAAACCTTGTACCATATCTTCTTTCCTTGGAGAGTGATCACAGGTAACAA
AAACACACGTGTTCAGAGTGATGGATGTTTTGGTTGGTCGTGTATAAGCT
TTGCTTTTCTCTGCTCAAGGCGAACCGACCCCTGGGCAATGTAGGCACAT
AACAGTACATGAGGAAAGCTCTCGGCCGCCTCACTTTGAGAGCTCAGAGC
AGACACTAAGCGGTTATCAGGTGGCAAAGTTGCAACGTCCCCGCGGCTGG
CCGAACGAAAACTATAAAAGCACATATTACCCCAACAGAGCCAACGATGT
CTTTTTTGTTACTAAGGATAGGGTTTTCACACCTCTCCGCTGTACAAGTA
TATAAATATGCGTGAAGTTGTATTGGTCGTTTGACACATGTAAAACCACA
GCTTATCTTCACTTAGGGGTCCCCAGCGTTTCGCGGGTCGATCGTCAGCA
TTTCGGATCGTGCTTTTTTATGATTTCCGGCACGAGGATGGCAGTAGCAG
TCTTGAGCCAGTCGGCGAGTTTACCTTGGGTCTTTTGCTACGCTACCCCA
ACTACTCGAGGGCGGTGAATTCGCCGGAGGGACCTTCGTCGTTGACGGTT
TTCCGTGGGGGAAGTTTTCTATTTTTTTGTTGTGCAGCTGGACCGAGGCC
GCTGGACTGGTATCAAAATGTGTTTTATCAAATGTGTTTGTTATAGCGGG
AACGCCCCGCTAGAGTGTTACAAAATTGATTGCAAGCGGGAGGATGAGTG
CGTTGGTCATGAAGAGGGAGGGGAGCGGGGATGGGATAAGCACTCTGCTT
GTGACATGAGTCGAACACACAAGCATAGTAGAATCAGTCAGAGATAAAAC
AGCTGGTTTCGTGTAAGGTGGGGTTTCAGCCGGGCTGTGTGCATAGTCTG
TGGAACCTGTGTTTCGTGTTTCGGGTATATCGCGCACTGTGCGCTTCGTC
GGCACCCATGTGCTGCGCGTTCAAACCTTGTTGTTGTTCAGCCTTTTTTA
TGTTGTAGTGCCCTTCCCAACGAATGGCCTAGCGACATCATCAGCTGTAT
GCAGCCATACGAAGACAACTTTGTTCTTCTAAGATTTACACTAAGTAAGA
TATTACAGCAGTATTGGACGGCCTTGGAGACATAGTAAGTAGCCTTTCAG
AGCGTTCCTGGGACCAGCCCTGGATGTCAAGATTCTCAGATTGAGCGGAC
TTGATGCGACTGCCTTGTGTTCGCCTTCCTTATAAAAACAAAACGATGTC
CAAATTTTGTTGTCCGGACATCCTCCACGTGGAGGTGAAGTTCGTTTCGT
AAGAGTACGGAACAAATCAAAGTCGGTTAACGAGTTTCAATTGTCATCCC
T
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7449:93..7193+

>mRNA_E_fasciculatus_S2_contig7449.15623.1 ID=mRNA_E_fasciculatus_S2_contig7449.15623.1|Name=mRNA_E_fasciculatus_S2_contig7449.15623.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=879bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7449:93..7193+ (Ectocarpus fasciculatus EfasUO2)
ATGGTCGCCGACGGTCTCGGCACCATGATCACCTCGCTGTTCGGGTCCCC
CTTTGGCACGGTCATGTACTTCGGACACCCCGCCTACAAGAAGTCGGGCG
CCAAGACCGGCTACAGCCTCATCAACGGCTTGCTCTACCTTTTCCTGTCA
TGGTTCGGCCTCGTCGCCCTCATCCGCTCCATCGTCAACCAGCCCACCAT
CGGGCCCATCGTACTGTTCGTGGGACTGATGCTTCTGGAAGAGTGCTTCC
GCTTCTTACCCCCCAGGCATTACGCCGCTGTGCTCTTTGGGCTCTTCCCT
TCCATCGCCGACTGGGTGACCAACATCGCCGCTCGCGGACCTCTGGCCGG
CGTCGCCGAGGACGGTACCGACTACAACACCAACCTGCCCGACCTCACCG
AAGGGTGGTGGGGCATCCTCGGCCTCAAGCGCGGGGCTATTCTGGTGTCT
CTCTGCTGGGTTGCCATGCTCGTACACATCATCGACCGCAAGTGGTGGCA
GGCGTCGGTCTGGGCAGTCATATCGGCCGGCTTCACCGCAGTCGGCATCA
TTCATGTTCCGGTGGCCGGATTCGACGACTTCACCTCTACCGTGGGCGAC
CTGTGTACTCCCGTGACCGACGATCTCGGAGTGGCGACCACGGCCACCTG
CTGGGACCACGCAGACCAGTGGCACTACATGACCGCATATCTCATAATGG
CGGTGGTTTTCGTCGCCATCGAAGGCCTCAGGCGGGCTGGCGTGGGGAAC
CTCGACGAGCCCATCTTGACCGAAGAGGCGGATGCCTTCAAGGACTGGTA
CGGCAACGAATCTCTCACTACCGCCCCCAAGATCGAGGGAGACAAGCCTG
CCGCTGTGGTCGCCGTTCCTATGGCCTAA
back to top