mRNA_E_fasciculatus_S2_contig7445.15620.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7445.15620.1
Unique NamemRNA_E_fasciculatus_S2_contig7445.15620.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: RuBisCo_chap_C (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR7_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 1.520e-72
Identity = 106/113 (93.81%), Postives = 109/113 (96.46%), Query Frame = 1
Query:    1 PPMPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRANREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVLAPFLPSMAKKSSGFEEEEY 339
            P  PQLGTVAVPGGEQVF MKEPVAIVCPNDDLNIQMPNDEK EMLLVIDRANREFEFGKFFLWDTPS+GLVVRYFEGEPTPGFACVGRVG+VLAPFLPSMAKKSSGFEEE+Y
Sbjct:  119 PEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPNDEKAEMLLVIDRANREFEFGKFFLWDTPSDGLVVRYFEGEPTPGFACVGRVGIVLAPFLPSMAKKSSGFEEEDY 231          
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G3_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 5.880e-59
Identity = 91/104 (87.50%), Postives = 93/104 (89.42%), Query Frame = 1
Query:    1 PPMPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRANREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVLAPFLPSMAKK 312
            P  PQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEM       NREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVG+VLAPFLPSM  +
Sbjct:   43 PEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEM-------NREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGIVLAPFLPSMTPR 139          
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: RuBisCo_chap_C (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L5_9STRA)

HSP 1 Score: 118 bits (296), Expect = 5.600e-31
Identity = 56/111 (50.45%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    1 PPMPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRANREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVLAPFLPSMAKKSSGFEEE 333
            P  PQ+GTVA+PGG+ V ++ +PV IV  +D L I +P D  TE+L V+DRA  +F+ GKFF+W  P + +++R+F+ EP  G+ C+GRV  V  PFL  M K SSGFEEE
Sbjct:  112 PEGPQMGTVALPGGDTVTDLIDPVIIVAASDSLGISLPQDATTEVLAVVDRAEVDFQEGKFFVWQAPDKSVIIRWFKQEPQ-GYQCLGRVVFVHVPFLDVMKKPSSGFEEE 221          
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: RuBisCo_chap_C (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G1_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 7.740e-21
Identity = 44/47 (93.62%), Postives = 44/47 (93.62%), Query Frame = 1
Query:    1 PPMPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLL 141
            P  PQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEM L
Sbjct:  114 PEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMHL 160          
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: RuBisCO (accumulation factor 1 n=1 Tax=Neosynechococcus sphagnicola sy1 TaxID=1497020 RepID=A0A098TKN9_9CYAN)

HSP 1 Score: 55.8 bits (133), Expect = 9.920e-7
Identity = 31/88 (35.23%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   25 VAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRANREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVLAP 288
            VA+PG + + N  +PVA++C ++ L   +P   + E+LLV+DRA R++    +FL +   + L+V++F    TP    +GRV +V+ P
Sbjct:  254 VAIPGWQVILNAADPVALLCDSERLPTPLPGAAE-ELLLVVDRAERQWSNEGYFLSEQDDQ-LIVQWF--PETPMLPILGRVVLVMRP 337          
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: RuBisCO (accumulation factor 1 n=1 Tax=Cyanobacteria bacterium QH_9_48_43 TaxID=1919126 RepID=A0A2T2RST4_9CYAN)

HSP 1 Score: 55.5 bits (132), Expect = 1.360e-6
Identity = 28/88 (31.82%), Postives = 52/88 (59.09%), Query Frame = 1
Query:   25 VAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRANREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVLAP 288
            V +PG + V N ++PV I+  +D   + +P   + E+L+++DRA R+++   +F+ D+  + L V++F     P    +GRV +VL P
Sbjct:  259 VPIPGWQVVLNAEDPVVILSSSDHFPVPLPGKPEQEVLILVDRAQRQWDADSYFISDSSGQ-LEVQWF--AEAPELPLLGRVILVLRP 343          
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: RuBisCO (accumulation factor 1 n=1 Tax=Iningainema tapete BLCC-T55 TaxID=2748662 RepID=A0A8J6XHQ5_9CYAN)

HSP 1 Score: 55.5 bits (132), Expect = 1.360e-6
Identity = 31/88 (35.23%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   25 VAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRANREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVLAP 288
            V +PG + + + ++PVAI+C +D L  Q P   +  +L+V+DRA R+++ G +F+ D  SE L  ++F  E  P    +GR+ V++ P
Sbjct:  261 VPLPGWQTLLSAEDPVAIMCNSDRLPTQTPTTPEP-VLVVVDRAQRQWDAGSYFVVDNSSE-LDFQWF--ETAPQVPILGRIIVIVRP 344          
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: hypothetical (protein n=1 Tax=Microcoleus sp. FACHB-1515 TaxID=2692821 RepID=UPI00168564B3)

HSP 1 Score: 54.3 bits (129), Expect = 3.450e-6
Identity = 30/88 (34.09%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   25 VAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRANREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVLAP 288
            + +PG + V   ++PVAI+   D L  +    ++ E+L+++DRA RE++   +FL D  S+ L +++FE EP      +GR+ +VL P
Sbjct:  253 IGIPGWQVVLAAEDPVAILADPDRLPAESSGKQE-EVLVIVDRAQREWQADSYFLVDRDSQ-LEIQWFENEPIEPI--LGRILIVLRP 336          
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: RuBisCO (accumulation factor 1 n=1 Tax=Oscillatoriales cyanobacterium SpSt-418 TaxID=2282169 RepID=A0A7C3KFJ3_9CYAN)

HSP 1 Score: 53.9 bits (128), Expect = 4.740e-6
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   25 VAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRANREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVLAP 288
            VA+PG + + + ++PV  +  +D L   +P   + E+LLVIDRA RE+   ++FL +   E L V++F  E +P    +G+V +VL P
Sbjct:  260 VAIPGWQVILSAEDPVVALVQSDQLPTPLPGTPQ-EVLLVIDRAQREWAGDRYFLVEQ-GEQLTVQWF--EQSPNVPLLGQVVLVLRP 343          
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: RuBisCO (accumulation factor 1 n=5 Tax=Hapalosiphonaceae TaxID=1892263 RepID=A0A0M0SLE7_9CYAN)

HSP 1 Score: 53.1 bits (126), Expect = 8.850e-6
Identity = 31/86 (36.05%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   25 VAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRANREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVL 282
            V +PG + + + ++PV I+C +D L  Q  N+ +  M+ VIDRA RE+  G +F+ D   E L  ++F  E TP    +GR+ V++
Sbjct:  262 VPLPGWQTILSAEDPVVILCNSDRLPTQTQNNPEPVMV-VIDRAQREWNSGSYFVVDNSGE-LDFQWF--ETTPEVTLLGRILVIV 343          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
RuBisCo_chap_C1.520e-7293.81domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized5.880e-5987.50protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
RuBisCo_chap_C5.600e-3150.45domain-containing protein n=1 Tax=Tribonema minus ... [more]
RuBisCo_chap_C7.740e-2193.62domain-containing protein n=1 Tax=Ectocarpus silic... [more]
RuBisCO9.920e-735.23accumulation factor 1 n=1 Tax=Neosynechococcus sph... [more]
RuBisCO1.360e-631.82accumulation factor 1 n=1 Tax=Cyanobacteria bacter... [more]
RuBisCO1.360e-635.23accumulation factor 1 n=1 Tax=Iningainema tapete B... [more]
hypothetical3.450e-634.09protein n=1 Tax=Microcoleus sp. FACHB-1515 TaxID=2... [more]
RuBisCO4.740e-636.36accumulation factor 1 n=1 Tax=Oscillatoriales cyan... [more]
RuBisCO8.850e-636.05accumulation factor 1 n=5 Tax=Hapalosiphonaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7445contigE_fasciculatus_S2_contig7445:6691..7556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score189.9
Seed ortholog evalue6.5e-46
Seed eggNOG ortholog2880.D7G2G3
Model size342
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2E2ES@1,2S9NI@2759
Cds size336
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842407.2769437-CDS-E_fasciculatus_S2_contig7445:6690..69091696842407.2769437-CDS-E_fasciculatus_S2_contig7445:6690..6909Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7445 6691..6909 -
1696842407.290206-CDS-E_fasciculatus_S2_contig7445:7433..75501696842407.290206-CDS-E_fasciculatus_S2_contig7445:7433..7550Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7445 7434..7550 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842407.3008695-UTR-E_fasciculatus_S2_contig7445:7550..75561696842407.3008695-UTR-E_fasciculatus_S2_contig7445:7550..7556Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7445 7551..7556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7445.15620.1prot_E_fasciculatus_S2_contig7445.15620.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7445 6691..7550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7445.15620.1

>prot_E_fasciculatus_S2_contig7445.15620.1 ID=prot_E_fasciculatus_S2_contig7445.15620.1|Name=mRNA_E_fasciculatus_S2_contig7445.15620.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=112bp
MPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRA
NREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVLAPFLPSMA
KKSSGFEEEEY*
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mRNA from alignment at E_fasciculatus_S2_contig7445:6691..7556-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7445.15620.1 ID=mRNA_E_fasciculatus_S2_contig7445.15620.1|Name=mRNA_E_fasciculatus_S2_contig7445.15620.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=866bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7445:6691..7556- (Ectocarpus fasciculatus EfasUO2)
CCCCCCATGCCCCAGCTGGGTACCGTTGCGGTGCCCGGCGGCGAGCAGGT TTTCAACATGAAGGAGCCCGTGGCGATTGTGTGCCCGAACGATGACCTTA ACATCCAGATGCCGAATGACGAGGTGTGTGCGGCGATTTTTGAGTGTCCT GCACGTGTTCGACGCGTTGTATTTTTGTGTTGTGTGTGTTTGTTCGACTC CACGGCTATACATATGGTACCGACAACGGACTGGCCGTCGCAACTAAGGG CGGTGATGGGGTCAACAGAGGGACGGATCCAATGCATGTGTGTGTGGTTG TGTTTTTTGGCGTGAGTTGTGGCTTTCTTCACTTGTTTTTATGGAGAGGG CGAGCGGTCTCTGGCGTTCACAGGGCTGACGGGACCAGACGAATGGCTGA CCTAGGCAAGAGGGTTGTCGCCAGCCGTTCTTATCCCATGGTTTCGAGAA ACGCCAGGCTTGGTTGTGGAAAACCTCGCTTGATTCGCGGTGTCAACAGC ATTCGCAGCACCGGCAGGACGACCATCTGAATCACAGATACCAATTGAGC CTGGTGTCTGACTCTCCTTCCCTTCCTCCCTCCCGCCGCATCTCCCTCTC TCTCACCTCTGTATCCTCACACAACAACAATGAACAAAAATAAAAAGAAA ACCGAGATGCTCTTGGTGATAGACCGAGCGAATCGAGAATTCGAATTCGG AAAGTTCTTCCTGTGGGACACGCCCTCCGAGGGCCTGGTGGTCCGCTACT TCGAGGGAGAGCCCACCCCGGGCTTCGCGTGCGTGGGGCGCGTCGGCGTC GTGCTGGCGCCTTTCTTGCCGTCCATGGCGAAAAAGTCGAGCGGTTTCGA GGAGGAAGAATATTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7445:6691..7556-

>mRNA_E_fasciculatus_S2_contig7445.15620.1 ID=mRNA_E_fasciculatus_S2_contig7445.15620.1|Name=mRNA_E_fasciculatus_S2_contig7445.15620.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=336bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7445:6691..7556- (Ectocarpus fasciculatus EfasUO2)
ATGCCCCAGCTGGGTACCGTTGCGGTGCCCGGCGGCGAGCAGGTTTTCAA
CATGAAGGAGCCCGTGGCGATTGTGTGCCCGAACGATGACCTTAACATCC
AGATGCCGAATGACGAGAAAACCGAGATGCTCTTGGTGATAGACCGAGCG
AATCGAGAATTCGAATTCGGAAAGTTCTTCCTGTGGGACACGCCCTCCGA
GGGCCTGGTGGTCCGCTACTTCGAGGGAGAGCCCACCCCGGGCTTCGCGT
GCGTGGGGCGCGTCGGCGTCGTGCTGGCGCCTTTCTTGCCGTCCATGGCG
AAAAAGTCGAGCGGTTTCGAGGAGGAAGAATATTGA
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