mRNA_E_fasciculatus_S2_contig7441.15616.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7441.15616.1 vs.
Match: 4Fe-4S (ferredoxin, iron-sulfur binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ8_ECTSI) HSP 1 Score: 495 bits (1274), Expect = 9.610e-172 Identity = 255/292 (87.33%), Postives = 259/292 (88.70%), Query Frame = 1
Query: 1 MMYLRHLRAGTCFLAAAXXXXXXXATIGLTAQQGLAFAPHPSQQP-SPRGKRCQFSSSTPRTLRCGTSAPSARAEEWREAVLPFLPPDHCRTTSPAESLGRGEWFKLICGASFEASFREFEDLPAIRDLSLVYTLAGADCIDVAAEEAVIEAARDGVIAALGVAEAIGKPMRMPWLMMSVNDDEEDPHFRKAVFDPNLCPAADCPRPCETICPADAVVFPDSAPPPAQREAMVGELLRASAGGGVLGPRCYGCGRCITVCPPGIIRAEKYKRSPGVVRELLEKVDGVEIHTK 873
MM LRHL AGTC LAAA +GLT QQGLAF PHPS+ P SPRGKR QFSSST R LRCG+SAPS RAEEWREAVLPFLPPDHCRT SPAESLGRGEWFKLICGASFE DLPAIRDLSLVYTLAGADCIDVAAEEAVIEAARDGVIAALGVAEAIGKPMRMPWLMMSVNDDEEDPHFRKA FDPNLCPA DCPRPCET+CPADAVVFPDSAPPPA R AMVGELLRASAGGGVLGPRCYGCGRCI VCPPGIIRAEKYKRSPGVVRELLEKVDGVEIHTK
Sbjct: 1 MMLLRHLSAGTCSLAAAAAAAATE-VVGLTVQQGLAFVPHPSRPPLSPRGKRYQFSSSTTRPLRCGSSAPSDRAEEWREAVLPFLPPDHCRTASPAESLGRGEWFKLICGASFE-------DLPAIRDLSLVYTLAGADCIDVAAEEAVIEAARDGVIAALGVAEAIGKPMRMPWLMMSVNDDEEDPHFRKAAFDPNLCPA-DCPRPCETVCPADAVVFPDSAPPPAHRAAMVGELLRASAGGGVLGPRCYGCGRCINVCPPGIIRAEKYKRSPGVVRELLEKVDGVEIHTK 283
BLAST of mRNA_E_fasciculatus_S2_contig7441.15616.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS5_9PHAE) HSP 1 Score: 333 bits (853), Expect = 1.920e-111 Identity = 166/172 (96.51%), Postives = 168/172 (97.67%), Query Frame = 1
Query: 358 EDLPAIRDLSLVYTLAGADCIDVAAEEAVIEAARDGVIAALGVAEAIGKPMRMPWLMMSVNDDEEDPHFRKAVFDPNLCPAADCPRPCETICPADAVVFPDSAPPPAQREAMVGELLRASAGGGVLGPRCYGCGRCITVCPPGIIRAEKYKRSPGVVRELLEKVDGVEIHTK 873
+DLPAIRDLSLVYTLAGADCIDVAAEEAVIEAARDGVIAALGVAE IGKPMRMPWLMMSVNDDEEDPHFRKA FDPNLCPA DCPRPCET+CPADAVVFPDSAPPPAQR AMVGELLRASAGGGVLGPRCYGCGRCITVCPPGIIRAEKYKRSPGVVRELLEKVDGVEIHTK
Sbjct: 11 QDLPAIRDLSLVYTLAGADCIDVAAEEAVIEAARDGVIAALGVAETIGKPMRMPWLMMSVNDDEEDPHFRKAAFDPNLCPA-DCPRPCETVCPADAVVFPDSAPPPAQRAAMVGELLRASAGGGVLGPRCYGCGRCITVCPPGIIRAEKYKRSPGVVRELLEKVDGVEIHTK 181
BLAST of mRNA_E_fasciculatus_S2_contig7441.15616.1 vs.
Match: 4Fe-4S (ferredoxin iron-sulfur binding domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7A0_9STRA) HSP 1 Score: 199 bits (507), Expect = 2.490e-58 Identity = 106/198 (53.54%), Postives = 127/198 (64.14%), Query Frame = 1
Query: 280 PAESLGRGEWFKLICGASFEASFREFEDLPAIRDLSLVYTLAGADCIDVAAEEAVIEAARDGVIAALGVAEAIGKPMRMPWLMMSVNDDEEDPHFRKAVFDPNLCPAADCPRPCETICPADAVVFPDSAPPPAQREAMVGELLRASAGGGVLGPRCYGCGRCITVCPPGIIRAEKYKRSPGVVRELLEKVDGVEIHTK 873
P +SL RGE+FKLICGASFE D +R+L+LVYTLAGADC+D AAE AV+ AA++G+ AL +A+ G +R PW M+SVNDD DPHFRKA FD CPA DCPRPCE +CPA A+ FPD V G CYGCGRCI VCPPGII A Y R+P V LL+ V+ +E+HTK
Sbjct: 21 PDQSLARGEFFKLICGASFE-------DASDVRNLALVYTLAGADCVDCAAERAVVAAAQEGIDTALAIAKDCGASLRRPWTMISVNDDARDPHFRKAAFDARRCPA-DCPRPCERVCPAQAIAFPDE----------------------VRG--CYGCGRCIPVCPPGIIDAVTYLRTPADVLPLLDMVEAIEVHTK 186
BLAST of mRNA_E_fasciculatus_S2_contig7441.15616.1 vs.
Match: Electron (transport complex subunit RsxB n=1 Tax=Acaryochloris thomasi RCC1774 TaxID=1764569 RepID=A0A2W1JI91_9CYAN) HSP 1 Score: 187 bits (475), Expect = 9.950e-54 Identity = 107/199 (53.77%), Postives = 129/199 (64.82%), Query Frame = 1
Query: 280 PAESLGRGEWFKLICGASFEASFREFEDLPAIRDLSLVYTLAGADCIDVAAEEAVIEAARDGVIAALGVAEAIGKPMRMPWLMMSVNDDEEDPHFRKAVFDPNLCPAADCPRPCETICPADAVVFPDSAPPPAQREAMVGELLRASAGGGVLGPRCYGCGRCITVCPPGIIRAEKYKRSPGVVRELL--EKVDGVEIHT 870
P +SL +G WFKLICGASF+ LPA+R+LSL YTLAGADCIDVAA+ AVI AA DG+ AA+ VA ++G PWLM+S+ND E DPHFRKAV DP CP DCPRPC TICPA A++F + GE GV+G RCYGCGRC+ +CP I AE ++ S V LL +VD +EIHT
Sbjct: 5 PLQSLEQGHWFKLICGASFQ-------HLPAVRNLSLAYTLAGADCIDVAADPAVIAAATDGINAAIEVASSLGNAPTRPWLMVSLNDGE-DPHFRKAVLDPARCPV-DCPRPCVTICPAQAILFSE------------GES-------GVMGDRCYGCGRCLPICPIDQITAETHRASLDAVVPLLVSHQVDALEIHT 175
BLAST of mRNA_E_fasciculatus_S2_contig7441.15616.1 vs.
Match: 4Fe-4S (ferredoxin n=3 Tax=unclassified Coleofasciculus TaxID=2692782 RepID=UPI001882D1CD) HSP 1 Score: 182 bits (461), Expect = 9.580e-52 Identity = 107/215 (49.77%), Postives = 132/215 (61.40%), Query Frame = 1
Query: 280 PAESLGRGEWFKLICGASFEASFREFEDLPAIRDLSLVYTLAGADCIDVAAEEAVIEAARDGVIAALGVAEAIGKPMRM--------PWLMMSVNDDEEDPHFRKAVFDPNLCPAADCPRPCETICPADAVVFPDSA-------PPPAQREAMVGELLRASAGGGVLGPRCYGCGRCITVCPPGIIRAEKYKRSPGVVRELL--EKVDGVEIHTK 873
P SL G WFKLICGASF+ LPA+R+LSL YTLAGADCIDVAA+ AVI AA+ AL VA + R+ PWLM+S+ND E DPHFRKA F+P+LCPA DCPRPCE ICPA A+VF S+ P +R + L +A GV+ RCYGCGRC+ +CP +I Y +P + EL+ +D +EIHTK
Sbjct: 7 PLHSLREGHWFKLICGASFQ-------HLPAVRNLSLAYTLAGADCIDVAADPAVIAAAKQ----ALQVAAQLQGTARLRGMGYSHRPWLMVSLNDGE-DPHFRKAEFNPDLCPA-DCPRPCERICPAQAIVFQTSSVLMSGAGEPENRRAGERDKSLHPTASSGVIDQRCYGCGRCVPICPSQLIHTRSYVSAPATLAELVLPSGIDALEIHTK 208
BLAST of mRNA_E_fasciculatus_S2_contig7441.15616.1 vs.
Match: 4Fe-4S (ferredoxin n=1 Tax=Cyanobacteria bacterium J069 TaxID=2420337 RepID=A0A3M1PP14_9CYAN) HSP 1 Score: 184 bits (467), Expect = 2.450e-51 Identity = 105/199 (52.76%), Postives = 129/199 (64.82%), Query Frame = 1
Query: 277 SPAESLGRGEWFKLICGASFEASFREFEDLPAIRDLSLVYTLAGADCIDVAAEEAVIEAARDGVIAALGVAEAIGKPMRMPWLMMSVNDDEEDPHFRKAVFDPNLCPAADCPRPCETICPADAVVFPDSAPPPAQREAMVGELLRASAGGGVLGPRCYGCGRCITVCPPGIIRAEKYKRSPGVVRELLEKVDGVEIHTK 873
+P +SL G WFKLICGASF+ LPAIR+L+L Y LAGADC+DVAA+ AVI AA++G+ AAL +G R+PWLM+S+ND E DPHFRKAVFDP CPA DCPRPCETICPA A+ F S A GV+ RCYGCGRC+ +CP I + +PG++ LL +VD VEIHT+
Sbjct: 32 TPLQSLREGRWFKLICGASFQ-------HLPAIRNLTLAYALAGADCVDVAADPAVIHAAQEGLQAAL----RLGCD-RLPWLMVSLNDGE-DPHFRKAVFDPARCPA-DCPRPCETICPAQAITFDRS----------------ADGHSGVIASRCYGCGRCLPLCPIQQITTQATAITPGMIPALLAEVDAVEIHTQ 200
BLAST of mRNA_E_fasciculatus_S2_contig7441.15616.1 vs.
Match: 4Fe-4S (ferredoxin n=2 Tax=Phormidium tenue TaxID=126344 RepID=UPI0017476775) HSP 1 Score: 180 bits (457), Expect = 7.870e-51 Identity = 104/201 (51.74%), Postives = 126/201 (62.69%), Query Frame = 1
Query: 280 PAESLGRGEWFKLICGASFEASFREFEDLPAIRDLSLVYTLAGADCIDVAAEEAVIEAARDGVIAA--LGVA-EAIGKPMRMPWLMMSVNDDEEDPHFRKAVFDPNLCPAADCPRPCETICPADAVVFPDSAPPPAQREAMVGELLRASAGGGVLGPRCYGCGRCITVCPPGIIRAEKYKRSPGVVRELLEKVDGVEIHTK 873
P SLG G WFKLICGASF+ LPA+R L+L Y LAGADC+DVAA+ AV+ AARD + AA L VA A G +PWLM+S+ND E DPHFRKA FDP+ CP DCPRPCETICPA A+VF D +P A GV+ CYGCGRC+ +CP G I + + + LL +VD +EIHT+
Sbjct: 7 PLRSLGEGNWFKLICGASFQ-------HLPAVRSLTLAYALAGADCVDVAADPAVVFAARDALQAAGDLAVAANARGYAAGIPWLMVSLNDGE-DPHFRKAEFDPSTCPT-DCPRPCETICPAQAIVF-DCSPT---------SDSSAQPQSGVVASHCYGCGRCLPICPLGKITTRSHSSTVTAIAPLLAEVDAIEIHTQ 188
BLAST of mRNA_E_fasciculatus_S2_contig7441.15616.1 vs.
Match: 4Fe-4S (binding domain protein n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 TaxID=118168 RepID=B4VIP2_9CYAN) HSP 1 Score: 181 bits (459), Expect = 1.140e-50 Identity = 106/211 (50.24%), Postives = 136/211 (64.45%), Query Frame = 1
Query: 277 SPAESLGRGEWFKLICGASFEASFREFEDLPAIRDLSLVYTLAGADCIDVAAEEAVIEAARD--GVIAAL---GVAEAIGKPMRMPWLMMSVNDDEEDPHFRKAVFDPNLCPAADCPRPCETICPADAVVF-PDSAPPPAQREAMVGELLR----ASAGGGVLGPRCYGCGRCITVCPPGIIRAEKYKRSPGVVRELLEK--VDGVEIHTK 873
+P +SL G WFKLICGASF+ LPA+R+L+L YTLAGADCIDVAA+ AVI AA+ GV +L G+A+ +G PWLM+S+ND E DPHFRKA F+PN CP DCPRPC+TICPA A+VF P PP ++++A + GV+ RCYGCGRC+ VCP +I Y +P + EL+ VD +EIHT+
Sbjct: 6 TPLQSLKEGRWFKLICGASFQ-------HLPAVRNLTLAYTLAGADCIDVAADPAVIAAAKTALGVATSLVESGLAQGMGYS-NQPWLMVSLNDGE-DPHFRKAEFNPNACPP-DCPRPCQTICPAQAIVFEPPPTPPESRKQAKPDQPFNYPHSPQGFSGVIDQRCYGCGRCLPVCPSQLIYTRSYVSAPTTLAELILSTGVDALEIHTQ 206
BLAST of mRNA_E_fasciculatus_S2_contig7441.15616.1 vs.
Match: Uncharacterized (protein n=3 Tax=Zea mays TaxID=4577 RepID=A0A804QQQ2_MAIZE) HSP 1 Score: 178 bits (451), Expect = 1.840e-50 Identity = 100/196 (51.02%), Postives = 125/196 (63.78%), Query Frame = 1
Query: 289 SLGRGEWFKLICGASFEASFREFEDLPAIRDLSLVYTLAGADCIDVAAEEAVIEAARDGVIAALGVAEAIGKPMRMPWLMMSVNDDEEDPHFRKAVFDPNLCPAADCPRPCETICPADAVVFPDSAPPPAQREAMVGELLRASAGGGVLGPRCYGCGRCITVCPPGIIRAEKYKRSPGVVRELLEK--VDGVEIHT 870
+LGRG+W KLICGASFE D +R+LSLVYTLAG DCID AA+ +V+ A +G+ VA +I ++ PWLM+SVNDD D HFRKA FDP+ CP DC +PCE +CPADA+ S E + + LR GGV+ RCYGCGRC+ VCP IRA Y R P + ELL++ VD +EIHT
Sbjct: 42 ALGRGDWVKLICGASFE-------DAADVRNLSLVYTLAGVDCIDCAADASVVGAVNEGI----EVAASIVPTVQRPWLMISVNDDCRDLHFRKAEFDPDDCPL-DCSKPCEKVCPADAISLKHSM---VDGERTLSDPLRGKYEGGVITERCYGCGRCLPVCPYDRIRAVSYVRDPTMTAELLKRDDVDAIEIHT 222
BLAST of mRNA_E_fasciculatus_S2_contig7441.15616.1 vs.
Match: Uncharacterized (protein MJ0264 (Fragment) n=2 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z475_9ARAE) HSP 1 Score: 179 bits (453), Expect = 2.070e-50 Identity = 101/199 (50.75%), Postives = 123/199 (61.81%), Query Frame = 1
Query: 280 PAESLGRGEWFKLICGASFEASFREFEDLPAIRDLSLVYTLAGADCIDVAAEEAVIEAARDGVIAALGVAEAIGKPMRMPWLMMSVNDDEEDPHFRKAVFDPNLCPAADCPRPCETICPADAVVFPDSAPPPAQREAMVGELLRASAGGGVLGPRCYGCGRCITVCPPGIIRAEKYKRSPGVVRELLEK--VDGVEIHT 870
P +SL RG+W KLICGASFE D +R+LSLVY LAG DC+D AA+ +V+ A +GV AA+ +A P+R PW+M+SVNDDE+D HFRKA FDP CP DC RPCE +CPADA+ P + G + GGV+ RCYGCGRC VCP IRA Y R V ELL + VD +EIHT
Sbjct: 72 PIQSLQRGDWVKLICGASFE-------DAADVRNLSLVYALAGVDCVDCAADASVVNAVVEGVEAAMSIA-----PVRRPWVMISVNDDEDDLHFRKAEFDPLDCPP-DCLRPCERVCPADAIWLERM---PTEDRLPDGVTTQGGLQGGVITERCYGCGRCFPVCPYDKIRARTYVRDMAVTSELLRRDNVDAIEIHT 254 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7441.15616.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7441.15616.1 >prot_E_fasciculatus_S2_contig7441.15616.1 ID=prot_E_fasciculatus_S2_contig7441.15616.1|Name=mRNA_E_fasciculatus_S2_contig7441.15616.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=291bp MMYLRHLRAGTCFLAAAAAAAAAAATIGLTAQQGLAFAPHPSQQPSPRGKback to top mRNA from alignment at E_fasciculatus_S2_contig7441:531..3115- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7441.15616.1 ID=mRNA_E_fasciculatus_S2_contig7441.15616.1|Name=mRNA_E_fasciculatus_S2_contig7441.15616.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2585bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7441:531..3115- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7441:531..3115- >mRNA_E_fasciculatus_S2_contig7441.15616.1 ID=mRNA_E_fasciculatus_S2_contig7441.15616.1|Name=mRNA_E_fasciculatus_S2_contig7441.15616.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=873bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7441:531..3115- (Ectocarpus fasciculatus EfasUO2)back to top |