mRNA_E_fasciculatus_S2_contig7440.15615.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7440.15615.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G450_ECTSI) HSP 1 Score: 475 bits (1222), Expect = 2.490e-165 Identity = 241/287 (83.97%), Postives = 259/287 (90.24%), Query Frame = 2
Query: 2 EEAQMSLKDFEASKGNTRFLETARSKAMTALAQGHNLDVKLSAATIAVSAGYVHLSKVDCPSEAKDFTVNGTLANVVSHFAPTWSDPSRASTADGKKTVSFLLNIVSCVRALPPESVPVLPNLDKRLLPAFGALCSAEPELRRMYHTVAGVAVRAMLEQQTMKGLFHLAEEVDVDVDACTTKESVVQALLVSGKRLLPSGAASGQAVIKANPPVPTRVYPAKAIPAPVRDARTDRAALMELFNATKGSSWKNNTGWGTSAPLGQWHGVKVDGTGRVTSLDLHENSLS 862
EEA+MSLK+FE SKGN RFLETA SKA+TAL QGH LDVKLSAA IAVSAGY+H+SKVDCPSEAKDFTVN TLANV+SHFAPTWSDPSRAS ADGKKTVSFLLNIVSCVRALPPESVPVL NLDKRLLPAFGALCSAEPELRRMYHTVAGVAVRAMLEQQTMKGLF LAEEVDVDVDACT+KESV+QALL SGK LLPSGA SGQAVIK+NPPVPTRV P KA+PAPVRDARTDR LMELFN TKG SW +T WGTS+ LG+W+GV V+ GRVT LDL +N+L+
Sbjct: 84 EEARMSLKNFEGSKGNVRFLETAHSKALTALVQGHTLDVKLSAAVIAVSAGYIHMSKVDCPSEAKDFTVNATLANVISHFAPTWSDPSRASKADGKKTVSFLLNIVSCVRALPPESVPVLSNLDKRLLPAFGALCSAEPELRRMYHTVAGVAVRAMLEQQTMKGLFQLAEEVDVDVDACTSKESVIQALLASGKCLLPSGATSGQAVIKSNPPVPTRVSPVKAMPAPVRDARTDRTVLMELFNTTKGPSWTTSTAWGTSSSLGEWYGVTVNAEGRVTKLDLEKNNLT 370
BLAST of mRNA_E_fasciculatus_S2_contig7440.15615.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT8_9PHAE) HSP 1 Score: 370 bits (949), Expect = 9.050e-124 Identity = 205/314 (65.29%), Postives = 223/314 (71.02%), Query Frame = 2
Query: 2 EEAQMSLKDFEASKGNTRFLETARSKAMTALAQGHNLDVKLSAATIAVSAGYVHLSKVDCPSEAKDFTVNGTLANVVSHFAPTWSDPSRASTADGKKTVSFLLNIVSCVRALPPESVPVLPNLDKRLLPAFGALCSAEPELRRMYHTVAGVAVRAMLEQQTMKGLFHLAEEVDVDVDACTTKESVVQALLVSGKRLLPSGAASGQAVIKANPPVPTRVYPAKAIPAPVRDARTDRAALMELFNATKGSSWKNNT---------------------------GWGTSAPLGQWHGVKVDGTGRVTSLDLHENSLS 862
EEAQM+LK+FEASKGN RFLETA SKAMTAL QGH LDVKL+AA IAVSAGYVH+SKVDCPSEAKDFTVNGTLANVVSHFAPTWSDPS ASTADGKKTVSFLLNIVSCV LPPES VL NLD+R+LPAF ALCSAEPELR MY VAG V AMLEQ+TM+ LFHLA+ V VDV++CT+ E++VQ LL SGK LLP PV +A TDR+ALMELFNAT GSSW N T GWGTS PL QWHGV VDG GRVT+LDL N+LS
Sbjct: 60 EEAQMALKNFEASKGNVRFLETAHSKAMTALVQGHTLDVKLNAAVIAVSAGYVHMSKVDCPSEAKDFTVNGTLANVVSHFAPTWSDPSCASTADGKKTVSFLLNIVSCVLVLPPESASVLSNLDERILPAFCALCSAEPELRCMYPKVAGAVVGAMLEQKTMRDLFHLADMVGVDVESCTSHEAMVQVLLSSGKALLPG---------------------------PVPNATTDRSALMELFNATNGSSWTNKTXXXXXXXXXXXXXXXXXXXXXXXXXXXGWGTSTPLQQWHGVTVDGAGRVTTLDLSGNNLS 346
BLAST of mRNA_E_fasciculatus_S2_contig7440.15615.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K720_9PHAE) HSP 1 Score: 316 bits (809), Expect = 1.890e-101 Identity = 173/306 (56.54%), Postives = 209/306 (68.30%), Query Frame = 2
Query: 5 EAQMSLKDFEASKGNTRFLETARSKAMTALAQGHNLDVKLSAATIAVSAGYVHLSKVDCPSEAKDFTVNGTLANVVSHFAPTWSDPSRASTADGKKTVSFLLNIVSCVRALPPESVPVLPNLDKRLLPAFGALCSAEPELRRMYHTVAGVAVRAMLEQQTMKGLFHLAEEVDVDVDACTTKESVVQALLVSGKRLLPSGAASGQAVI--------------------KANPPVPTRVYPAKAIPAPVRDARTDRAALMELFNATKGSSWKNNTGWGTSAPLGQWHGVKVDGTGRVTSLDLHENSLS 862
EA+M+LK+F ASKG RFL+ ARSKA+TAL QGH +DVKLSAA IAVSAGYV SK + P EAK FTVNGTL N+V AP W D SR ++ADG K ++FLLN+VSCV ALPP + PVLP+LDKRLLPAFG LC+ EPE+ RMY V GVA RA+L QTM+ LF LA+EVDVDV CT+K+ V+Q LL SGK L + A +A++ + P V + + P RDA TDRAAL+ LF AT G SWK T WGTSAPLG+W+GV VD GRV+ L+L +N LS
Sbjct: 186 EAEMALKNFTASKGQVRFLDEARSKALTALVQGHTVDVKLSAAVIAVSAGYVFASKTESPLEAKQFTVNGTLVNIVDVLAPLWVDSSRGASADGPKVLAFLLNLVSCVCALPPVAEPVLPDLDKRLLPAFGTLCATEPEIYRMYPEVGGVAARALLAIQTMRDLFELADEVDVDVAKCTSKDEVIQILLASGKALFRAPATGVKAMLEGQTVSDLWLLARENDVDMDRCKPLVIKILLGSGKDLKPTRDASTDRAALLALFIATNGPSWKKGTAWGTSAPLGEWYGVTVDDDGRVSQLELGDNGLS 491
BLAST of mRNA_E_fasciculatus_S2_contig7440.15615.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ1_9PHAE) HSP 1 Score: 304 bits (778), Expect = 4.550e-101 Identity = 160/233 (68.67%), Postives = 175/233 (75.11%), Query Frame = 2
Query: 164 LSKVDCPSEAKDFTVNGTLANVVSHFAPTWSDPSRASTADGKKTVSFLLNIVSCVRALPPESVPVLPNLDKRLLPAFGALCSAEPELRRMYHTVAGVAVRAMLEQQTMKGLFHLAEEVDVDVDACTTKESVVQALLVSGKRLLPSGAASGQAVIKANPPVPTRVYPAKAIPAPVRDARTDRAALMELFNATKGSSWKNNTGWGTSAPLGQWHGVKVDGTGRVTSLDLHENSLS 862
+SKVDCPSEAKDFTVNGTLANVVSHFAPTWSDPS ASTADGKKTVSFLLNIVSCV ALPPES PVL NLD+R+LPAF ALCSAEPELR MY VAG V AMLEQ+T++ LFHLA+ V VDV++CT+ E++VQ LL SGK LLP V +A TDR+ALMELFNATKGSSW N TGWGTSAPL QWHGV VDG GRVT+L L N LS
Sbjct: 1 MSKVDCPSEAKDFTVNGTLANVVSHFAPTWSDPSCASTADGKKTVSFLLNIVSCVLALPPESAPVLSNLDERILPAFCALCSAEPELRYMYPKVAGAVVGAMLEQKTIRDLFHLADTVGVDVESCTSHEAMVQVLLSSGKALLPGS---------------------------VPNATTDRSALMELFNATKGSSWTNKTGWGTSAPLQQWHGVTVDGAGRVTTLKLGWNKLS 206
BLAST of mRNA_E_fasciculatus_S2_contig7440.15615.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD84_ECTSI) HSP 1 Score: 313 bits (803), Expect = 2.850e-99 Identity = 173/306 (56.54%), Postives = 207/306 (67.65%), Query Frame = 2
Query: 5 EAQMSLKDFEASKGNTRFLETARSKAMTALAQGHNLDVKLSAATIAVSAGYVHLSKVDCPSEAKDFTVNGTLANVVSHFAPTWSDPSRASTADGKKTVSFLLNIVSCVRALPPESVPVLPNLDKRLLPAFGALCSAEPELRRMYHTVAGVAVRAMLEQQTMKGLFHLAEEVDVDVDACTTKESVVQALLVSGKRLLPSGAASGQAVIKANP-----------PVPTRVYPAKAIPA---------PVRDARTDRAALMELFNATKGSSWKNNTGWGTSAPLGQWHGVKVDGTGRVTSLDLHENSLS 862
EA+M+LK+F AS GN RFL+ A SKAMTAL QGH +DVKLSAA IAVSAGYV SK D P EAK FTVNGTL N+V AP W D SRA++ADG K ++FLLN+VSCV ALPP + PVLP+LDKRLLPAFG LC+ EP + RMY + GVA RA+L QTM+ LF LA+EVDVDV CT+K+ V+Q LL SGK L + A +A +++ V Y I P RDA TDRAAL+ LF AT G SW +T WGT+APLG+W+GV VD GRV+ L+L EN LS
Sbjct: 298 EAEMALKNFTASGGNVRFLDVAHSKAMTALVQGHTVDVKLSAAVIAVSAGYVFASKTDSPLEAKQFTVNGTLVNIVDVLAPLWVDSSRAASADGPKVLAFLLNLVSCVCALPPVAEPVLPDLDKRLLPAFGTLCATEPGIYRMYPEIGGVAARALLASQTMRDLFELADEVDVDVARCTSKDEVIQILLGSGKALFRAPATGVEAKLESQTMLDLCQLAREKDVDIDRYKTHVIKILLGSGKDLNPTRDASTDRAALLALFIATNGPSWTTSTAWGTAAPLGEWYGVTVDDDGRVSQLELRENGLS 603
BLAST of mRNA_E_fasciculatus_S2_contig7440.15615.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B9_9PHAE) HSP 1 Score: 267 bits (682), Expect = 6.700e-84 Identity = 148/286 (51.75%), Postives = 187/286 (65.38%), Query Frame = 2
Query: 2 EEAQMSLKDFEASKGNTRFLETARSKAMTALAQGHNLDVKLSAATIAVSAGYVHLSKVDCPSEAKDFTVNGTLANVVSHFAPTWSDPSRASTADGKKTVSFLLNIVSCVRALPPESVPVLPNLDKRLLPAFGALCSAEPELRRMYHTVAGVAVRAMLEQQTMKGLFHLAEEVDVDVDACTTKESVVQALLVSGKRLLPSGAASGQAVIK--ANPPVPTRVYPAKAIPAP-----VRDARTDRAALMELFNATKG-------------SSWKNNTGWGTSAPLGQWH 799
EEA MSLK+FEAS + L+ A KA TAL G L++K +AATI +SAGYVH K PSEAK TV G+LANVV HFA W+DPSR+ T + +K +SFLLN+VSCV LPPE+VPVLP LD RLLPAFGALC++EPELRR+Y V G AV+AMLE++TM+ LF LA EV DV ACT+K+ V++ L S + L+P+ A + + V++ P+P+ PA A+ AP V TD ALM L+ T G W+N GWGT APLG W+
Sbjct: 124 EEAHMSLKEFEASGDDVDELKEASRKARTALVTGSTLEIKFTAATITISAGYVHKMKAGSPSEAKQATVKGSLANVVKHFATIWADPSRSGTVEERKVLSFLLNVVSCVCVLPPENVPVLPELDSRLLPAFGALCASEPELRRLYPDVGGAAVKAMLEEKTMQSLFELATEVGADVTACTSKDGVIEILSTSERDLVPTQATACKGVVEEVVRTPLPSGKGPAPAVVAPIPAPPVGSTSTDMGALMALYFQTNGPPEKKGRLWAAAKGGWRNRRGWGTFAPLGDWY 409
BLAST of mRNA_E_fasciculatus_S2_contig7440.15615.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6V2_ECTSI) HSP 1 Score: 111 bits (278), Expect = 1.500e-24 Identity = 70/200 (35.00%), Postives = 110/200 (55.00%), Query Frame = 2
Query: 44 GNTRFLETARSKAMTALAQ---GHNLDVKLSAATIAVSAGYVHLSKVDCPSEAKDFTVNGTLANVVSHFAPTWSDPSRASTADGKKTVSFLLNIVSCVRALPPESVPVLPNLDKRLLPAFGALCSAEPELRRMYHTVAGVAVRAMLEQQTMKGLFHLAEEVDVDVDACTTKESVVQALLVSGKRLLPSGAASGQAVIKAN 634
G + L+ A+ M L + +L V A IA++A + ++ + P+ AK + +G NV+ F W+DP A T +G V +LL+IVS V LPPE + +LP LD RL+ AFG LCS+EP + Y V G AVRA+L+ + + L +++ + VD+ C + ++Q +L ++ +P AA Q V K N
Sbjct: 184 GEPQLLDQAKESCMEILIREPHSDSLRVHFLAGCIAIAASFTKHAQQEPPARAKAYVFDGVFRNVMLSFESFWTDPCAARTRNGICVVEYLLSIVSSVCMLPPEGL-LLPQLDDRLVKAFGVLCSSEPSILDRYPEVGGAAVRALLQSKPLDELCRMSKSLGVDIALCDNRADLIQGML-DKRKSIPVDAAMDQ-VTKTN 380
BLAST of mRNA_E_fasciculatus_S2_contig7440.15615.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW98_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 6.050e-19 Identity = 58/132 (43.94%), Postives = 68/132 (51.52%), Query Frame = 2
Query: 467 MLEQQTMKGLFHLAEEVDVDVDACTTKESVVQALLVSGKRLLPSGAASGQAVIKANPPVPTRVYPAKAIPAPVRDARTDRAALMELFNATKGSSWKNNTGWGTSAPLGQWHGVKVDGTGRVTSLDLHENSLS 862
MLE QTM L LA E DVDVD C K V++ LL SGK L P RDA TD AAL+ LF A G SWK +T WG PLG+W+GV VD GRV+ L+ ++N LS
Sbjct: 1 MLESQTMLDLCLLARENDVDVDRC--KAYVIRILLGSGKELEPP-----------------------------RDATTDCAALLALFTAANGPSWKTSTAWGDVCPLGEWYGVTVDDDGRVSQLNTYKNGLS 101
BLAST of mRNA_E_fasciculatus_S2_contig7440.15615.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE6_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 6.180e-19 Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 2
Query: 2 EEAQMSLKDFEASKGNTRFLETARSKAMTALAQGHNLDVKLSAATIAVSAGYVHLSKV 175
EEAQM+LK+FEASKGN RFLETA SKAMTAL QGH LDVKL+AA IAVSAGYVH+SKV
Sbjct: 76 EEAQMALKNFEASKGNVRFLETAHSKAMTALVQGHALDVKLNAAVIAVSAGYVHMSKV 133
BLAST of mRNA_E_fasciculatus_S2_contig7440.15615.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG9_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 2.870e-15 Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 2
Query: 698 TDRAALMELFNATKGSSWKNNTGWGTSAPLGQWHGVKVDGTGRVTSLDLHENSLS 862
TDRAALMELFN TKG SWK +T WG+S+ LG+W+GV V+ GRVT L L++N+L+
Sbjct: 60 TDRAALMELFNTTKGPSWKTSTAWGSSSFLGEWYGVTVNAEGRVTKLHLNDNNLT 114 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7440.15615.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7440.15615.1 >prot_E_fasciculatus_S2_contig7440.15615.1 ID=prot_E_fasciculatus_S2_contig7440.15615.1|Name=mRNA_E_fasciculatus_S2_contig7440.15615.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=283bp MSLKDFEASKGNTRFLETARSKAMTALAQGHNLDVKLSAATIAVSAGYVHback to top mRNA from alignment at E_fasciculatus_S2_contig7440:3750..4903+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7440.15615.1 ID=mRNA_E_fasciculatus_S2_contig7440.15615.1|Name=mRNA_E_fasciculatus_S2_contig7440.15615.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1154bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7440:3750..4903+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7440:3750..4903+ >mRNA_E_fasciculatus_S2_contig7440.15615.1 ID=mRNA_E_fasciculatus_S2_contig7440.15615.1|Name=mRNA_E_fasciculatus_S2_contig7440.15615.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=849bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7440:3750..4903+ (Ectocarpus fasciculatus EfasUO2)back to top |