mRNA_E_fasciculatus_S2_contig744.15612.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig744.15612.1 vs.
Match: HMG (box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH0_9PHAE) HSP 1 Score: 193 bits (491), Expect = 3.670e-57 Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 3
Query: 60 QPAVSKKSAKAASNGGPVKRKRKAKKDPNKPKGASSAFMQFSQKERAVVKEENPDMKVTEISKVLGARWREMDDNDKAPFQKKADKDKARYQKEMAAYNAKKAAEPAS 383
+PAVSKKSAKAASNGGPVKRK+KAKKDPNKPKGASSAFMQFSQKERAVVKEENPDMKVTEISK+LGARWREMDDNDKAPFQKKADKDKARYQKEMAAYNAKKAAEPAS
Sbjct: 3 KPAVSKKSAKAASNGGPVKRKKKAKKDPNKPKGASSAFMQFSQKERAVVKEENPDMKVTEISKLLGARWREMDDNDKAPFQKKADKDKARYQKEMAAYNAKKAAEPAS 110
BLAST of mRNA_E_fasciculatus_S2_contig744.15612.1 vs.
Match: ATHMG ((ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLE3_ECTSI) HSP 1 Score: 131 bits (330), Expect = 5.800e-34 Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 3
Query: 174 MQFSQKERAVVKEENPDMKVTEISKVLGARWREMDDNDKAPFQKKADKDKARYQKEMAAYNAKKAAEPAS 383
MQFSQKERAVVK+ENPDMKVTEISKVLGARWREMDDNDKAPFQKKADKDKARYQKEMAAYNAKKAAEPAS
Sbjct: 1 MQFSQKERAVVKQENPDMKVTEISKVLGARWREMDDNDKAPFQKKADKDKARYQKEMAAYNAKKAAEPAS 70
BLAST of mRNA_E_fasciculatus_S2_contig744.15612.1 vs.
Match: FACT (complex subunit SSRP1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF8_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 1.290e-18 Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = 3
Query: 129 AKKDPNKPKGASSAFMQFSQKERAVVKEENPDMKVTEISKVLGARWREMDDNDKAPFQKKADKDKARYQKEMAAYNAKKAA 371
AKKD + PKGA SAFMQFSQ RA VK +NP++KVTEISKVLG +W ++D+ K P+Q KAD+DKARY++E AY++KKAA
Sbjct: 546 AKKDKDAPKGAMSAFMQFSQANRAQVKTDNPELKVTEISKVLGEKWGKLDETQKKPYQDKADEDKARYKRERDAYDSKKAA 626
BLAST of mRNA_E_fasciculatus_S2_contig744.15612.1 vs.
Match: Nucleosome (binding protein (Nhp6a) n=6 Tax=Rhodosporidium toruloides TaxID=5286 RepID=M7X9L2_RHOT1) HSP 1 Score: 91.3 bits (225), Expect = 2.120e-18 Identity = 51/99 (51.52%), Postives = 71/99 (71.72%), Query Frame = 3
Query: 63 PAVSKKSAKAASNGGPVKRKRKAKKDPNKPKGASSAFMQFSQKERAVVKEENPDMKVTEISKVLGARWREMDDNDKAPFQKKADKDKARYQKEMAAYNA 359
P SK A A+ GG +AKKDPN PK SA+M FSQ +R+VVKEENPD+ EI K+LGA+W+E+ ++++ P+++KA DK+RY+KE AAY+A
Sbjct: 2 PKESKPRATKAATGG------RAKKDPNAPKRPLSAYMHFSQDQRSVVKEENPDVTFGEIGKILGAKWKELPEDERKPYEEKASADKSRYEKEKAAYDA 94
BLAST of mRNA_E_fasciculatus_S2_contig744.15612.1 vs.
Match: High (mobility group box domain-containing protein n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2FPQ8_9BASI) HSP 1 Score: 90.1 bits (222), Expect = 3.870e-18 Identity = 47/81 (58.02%), Postives = 62/81 (76.54%), Query Frame = 3
Query: 126 KAKKDPNKPKGASSAFMQFSQKERAVVKEENPDMKVTEISKVLGARWREMDDNDKAPFQKKADKDKARYQKEMAAYNAKKA 368
KAKKDPN PK SA+M FSQ+ RA VKEENP+ ++ K+LGA+W+EMDD++K PF K+A+ DKARY+ E AY++K A
Sbjct: 20 KAKKDPNAPKRPLSAYMFFSQENRATVKEENPEASFGDLGKLLGAKWKEMDDDEKKPFVKQANDDKARYETEKEAYDSKAA 100
BLAST of mRNA_E_fasciculatus_S2_contig744.15612.1 vs.
Match: HMG (box domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q4Q9_MORIS) HSP 1 Score: 89.4 bits (220), Expect = 4.200e-18 Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query: 63 PAVSKKSAKAASNGGPVKRKRKAKKDPNKPKGASSAFMQFSQKERAVVKEENPDMKVTEISKVLGARWREMDDNDKAPFQKKADKDKARYQKEMAAYNAK 362
P SKK K +KR+AKKDPN PK SA+M FSQ+ R VKE+NP+ +I K+LG +W+EMDD+DKAPF KA+ DK RY+KE A ++ K
Sbjct: 2 PKDSKKDTKTTKRNADDGKKRRAKKDPNAPKRGLSAYMFFSQELRQKVKEDNPEASFGQIGKILGDKWKEMDDSDKAPFAAKAEADKKRYEKEKAEHDGK 101
BLAST of mRNA_E_fasciculatus_S2_contig744.15612.1 vs.
Match: HMG (box domain-containing protein n=2 Tax=Schizophyllaceae TaxID=5332 RepID=D8Q5A9_SCHCM) HSP 1 Score: 86.3 bits (212), Expect = 7.470e-17 Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = 3
Query: 123 RKAKKDPNKPKGASSAFMQFSQKERAVVKEENPDMKVTEISKVLGARWREMDDNDKAPFQKKADKDKARYQKEMAAYNAKKAAE 374
RKAKKDPN PK A SA+M FSQ R VK ENPD E+ K+LGA+W+EMD+++K P+ KA KDK R + + AAY+ KK+AE
Sbjct: 22 RKAKKDPNAPKRALSAYMFFSQDWRERVKAENPDASFGELGKILGAKWKEMDEDEKKPYVAKAAKDKERAEADKAAYDEKKSAE 105
BLAST of mRNA_E_fasciculatus_S2_contig744.15612.1 vs.
Match: HMG (box domain-containing protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A0P9IRN0_RHOGW) HSP 1 Score: 86.3 bits (212), Expect = 1.250e-16 Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = 3
Query: 126 KAKKDPNKPKGASSAFMQFSQKERAVVKEENPDMKVTEISKVLGARWREMDDNDKAPFQKKADKDKARYQKEMAAYNAKKA--AEPAS 383
K KKDPN PK SA+M FSQ +R+ VKEENPD+ EI K+LGA+W+E D++K P+Q KA+ DK RY+KE +AY+ + A+PAS
Sbjct: 17 KPKKDPNAPKRPLSAYMHFSQDKRSEVKEENPDVTFGEIGKLLGAKWKEATDDEKKPYQAKAEADKERYEKEKSAYDEENPDQAKPAS 104
BLAST of mRNA_E_fasciculatus_S2_contig744.15612.1 vs.
Match: Non-histone (chromosomal protein 6 n=1 Tax=Rhodotorula sp. CCFEE 5036 TaxID=1965284 RepID=A0A4V5NCD6_9BASI) HSP 1 Score: 83.6 bits (205), Expect = 1.080e-15 Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 3
Query: 126 KAKKDPNKPKGASSAFMQFSQKERAVVKEENPDMKVTEISKVLGARWREMDDNDKAPFQKKADKDKARYQKEMAAYNA 359
K KKDPN PK SA+M FSQ +RA VKEE PD+ EI K+LGA+W+E D+ ++ P++ KA +KARY+KE AAY+A
Sbjct: 17 KPKKDPNAPKRPLSAYMLFSQDKRAEVKEEKPDVTFGEIGKILGAKWKEADEAERKPYEDKAAAEKARYEKEKAAYDA 94
BLAST of mRNA_E_fasciculatus_S2_contig744.15612.1 vs.
Match: HMG (box domain-containing protein (Fragment) n=1 Tax=Leucosporidium scottii TaxID=5278 RepID=A0A0H5FTZ1_9BASI) HSP 1 Score: 82.8 bits (203), Expect = 1.730e-15 Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 3
Query: 126 KAKKDPNKPKGASSAFMQFSQKERAVVKEENPDMKVTEISKVLGARWREMDDNDKAPFQKKADKDKARYQKEMAAYNAK 362
KAKKDPN PK SA+M FS R VK ENP+ ++ K+LGA+W+EMDD++K PF K+A+ DKARY+ E AY++K
Sbjct: 20 KAKKDPNAPKRPLSAYMFFSSANRTTVKAENPEASFGDLGKLLGAKWKEMDDDEKKPFVKQANDDKARYETEKEAYDSK 98 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig744.15612.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig744.15612.1 >prot_E_fasciculatus_S2_contig744.15612.1 ID=prot_E_fasciculatus_S2_contig744.15612.1|Name=mRNA_E_fasciculatus_S2_contig744.15612.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=86bp MQFSQKERAVVKEENPDMKVTEISKVLGARWREMDDNDKAPFQKKADKDKback to top mRNA from alignment at E_fasciculatus_S2_contig744:8942..12054- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig744.15612.1 ID=mRNA_E_fasciculatus_S2_contig744.15612.1|Name=mRNA_E_fasciculatus_S2_contig744.15612.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3113bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig744:8942..12054- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig744:8942..12054- >mRNA_E_fasciculatus_S2_contig744.15612.1 ID=mRNA_E_fasciculatus_S2_contig744.15612.1|Name=mRNA_E_fasciculatus_S2_contig744.15612.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=258bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig744:8942..12054- (Ectocarpus fasciculatus EfasUO2)back to top |