mRNA_E_fasciculatus_S2_contig744.15611.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig744.15611.1
Unique Name	mRNA_E_fasciculatus_S2_contig744.15611.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig744.15611.1 vs.
Match: RRM (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JBS4_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 1.030e-61
Identity = 107/113 (94.69%), Postives = 110/113 (97.35%), Query Frame = 2

Query:    2 AAMLDRPGEGVVKFAERWAAEMFMSKSKSFGGIPLTMSWYTGPFPGSAPASSQPPRRPHQGPGSFQQAAPVISDGAGDSIELKLAPVQQGVGMGGPRGGGG-WGDDFGKEEGV 337
            AAMLDRPGEGVVKFAERWAAEMFMSKSKSFGGIPLTMSWYTGPFPGSAPASSQPPRRPHQGP +FQQAAPVISD +GDSIELKLAPVQQG+GMGGPRGGGG WGDDFGKEEGV
Sbjct: 1431 AAMLDRPGEGVVKFAERWAAEMFMSKSKSFGGIPLTMSWYTGPFPGSAPASSQPPRRPHQGPETFQQAAPVISDVSGDSIELKLAPVQQGLGMGGPRGGGGGWGDDFGKEEGV 1543

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig744.15611.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig744.15611.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
RRM	1.030e-61	94.69	domain-containing protein n=2 Tax=Ectocarpus TaxID...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig744	contig	E_fasciculatus_S2_contig744:3207..5451 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	214.2
Seed ortholog evalue	3.2e-53
Seed eggNOG ortholog	2880.D7FLE2
Preferred name	RBM26
Model size	338
KEGG ko	ko:K03234,ko:K11267,ko:K13192,ko:K13193
KEGG Pathway	ko04152,ko04921,map04152,map04921
Hectar predicted targeting category	other localisation
GOs	GO:0000228,GO:0000785,GO:0000790,GO:0001672,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0008150,GO:0008589,GO:0009892,GO:0009893,GO:0009966,GO:0009968,GO:0010468,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010648,GO:0010847,GO:0010921,GO:0010923,GO:0016604,GO:0016607,GO:0019219,GO:0019220,GO:0019222,GO:0023051,GO:0023057,GO:0031323,GO:0031324,GO:0031440,GO:0031441,GO:0031445,GO:0031974,GO:0031981,GO:0032239,GO:0032241,GO:0032386,GO:0032388,GO:0032879,GO:0032991,GO:0033043,GO:0033044,GO:0035303,GO:0035305,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044087,GO:0044092,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045879,GO:0045934,GO:0045936,GO:0046822,GO:0046824,GO:0046831,GO:0046833,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050684,GO:0050686,GO:0050789,GO:0050790,GO:0050794,GO:0051049,GO:0051050,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0060255,GO:0060341,GO:0065007,GO:0065009,GO:0070013,GO:0080090,GO:0097159,GO:1900363,GO:1900364,GO:1901363,GO:1902275,GO:1902802,GO:1903311,GO:1903312,GO:1990477
Exons	3
EggNOG free text desc.	mRNA processing
EggNOG OGs	KOG2135@1,KOG2135@2759
Cds size	330
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01009,ko03012,ko03019,ko03036,ko03041,ko04147

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842406.5769126-UTR-E_fasciculatus_S2_contig744:3206..3213	1696842406.5769126-UTR-E_fasciculatus_S2_contig744:3206..3213	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig744 3207..3213 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842406.592124-CDS-E_fasciculatus_S2_contig744:3213..3260	1696842406.592124-CDS-E_fasciculatus_S2_contig744:3213..3260	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig744 3214..3260 +
1696842406.6027756-CDS-E_fasciculatus_S2_contig744:5147..5278	1696842406.6027756-CDS-E_fasciculatus_S2_contig744:5147..5278	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig744 5148..5278 +
1696842406.6189861-CDS-E_fasciculatus_S2_contig744:5299..5451	1696842406.6189861-CDS-E_fasciculatus_S2_contig744:5299..5451	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig744 5300..5451 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig744.15611.1	prot_E_fasciculatus_S2_contig744.15611.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig744 3214..5451 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig744:3207..5451+
coding sequence from alignment at E_fasciculatus_S2_contig744:3207..5451+

protein sequence of mRNA_E_fasciculatus_S2_contig744.15611.1

>prot_E_fasciculatus_S2_contig744.15611.1 ID=prot_E_fasciculatus_S2_contig744.15611.1|Name=mRNA_E_fasciculatus_S2_contig744.15611.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=110bp
MLDRPGEGVVKFAERWAAEMFMSKSKSFGGIPLTMSWYTGPFPGSAPASS
QPPRRPHQGPGSFQQAAPVISDGAGDSIELKLAPVQQGVGMGGPRGGGGW
GDDFGKEEGV

mRNA from alignment at E_fasciculatus_S2_contig744:3207..5451+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig744.15611.1 ID=mRNA_E_fasciculatus_S2_contig744.15611.1|Name=mRNA_E_fasciculatus_S2_contig744.15611.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2245bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig744:3207..5451+ (Ectocarpus fasciculatus EfasUO2)
GGCTGCGATGCTTGACCGTCCTGGCGAGGGCGTCGTCAAGTTTGCGGAGA
GATGGTGAGCTAGTTACGTAGCGCTTGCATGTAGAAGGCCTCTATCCGGA
GTGGGTTAAAGAGAGCACCGCGGCAGGGGGTGATGCAAAATTATGCAAAA
AGCAGACAGAGACATAGCTTCTCCATGGATGTATGTCGGTATTCATGAGA
CGGAAGTCCGAGACGGAAGTCCATGAAGGATGAAAAGAAAAGGCGACAAC
AGAAATGAAACCATTACACCACCCCCTCATCACTGCTTGTTGGCGTCTGC
GTGGTAGGAAGGAGACAGGGTTGAGTAGTGGCCCGAATGGGGGTGCCAAA
GGACGATGAGAAGTTTTGGCTGTGGTGGATGGGGTGACAGAAAAGAGCTG
CCTGCGGTTCTATTTGAATGGTTTGACCGTACATGTGGCACGATCGACGA
AAGTCCTCTTCTTCCTCTTCTCGAGAAAAGGGGGAAGCAACTGAAAACGA
ACACCTCAAAGCTCGCCGTCAGAGTCAGCCGCGAGAGCAGACAAGCTTAC
GGCCCCCTTGAAACCGGACCATGTCGATGCAGCAAGCAACGAAGCGAGTC
GAGAGGGGTGACAGCCAATCCTCTTGTCCAAACCGCCACAAGCGTGCACC
ATCGATCTTGGTCTTCTCCTCCGCAGAAGTTCCCAGTTGATGTAGCGTAC
AGTTAGAAGCGGGTCTCAAGCCCAGTCGAGCCACCCATGGGTAAGCACTC
ACTGTACCCGTGGCAAGATCATGCTTTCAGAGAGTTGAATGTGAAAACTC
ACCAACAGCGGTGAGGTCCACAGCCGAGTTCCTAACCCCGACCACCTGAA
CGTCCCCCATACACACCCCTCGGGGGCAGGGACGAGGCCACGGCGCATCA
TGTCAATAATCTCCCTCTGTGACGGGCCGAACGCATTTCCCTCCATATCA
TCCAGTCGTCGAGAGATGGACAAGATGGAGAGAAATAGGTTCGGCCCGTC
ACAGAGGGAACTCCTAGACATACATGATGCGCCGTGGCCTCGTCCCTGAC
CCGAGCGGTGTGTATGGGGACGTTCAGGTGGTCGGGGTAAGGAGATCGGC
TGTGGACCTCACCGCTGTTGACGAGTTTTCGCATTGACTCTCTAAAAGCA
CGAAACCACAGCAGAAACGACCAGCTTGTGTGCCTGAAACCTCGGCAGTT
CTCCCTCCGGTACACTTAGTTCAAGTTTGCAGTCGTACGGACGAGGCGGA
GGCATGGTGCTGCATTGCCGACGTACGGGCAAGGGAATGTGTCGTTTTGC
AGGCGTATTGGGGAACACAGAGGACCTGCGTGTGCGATCAGGAACCAAGG
TACCGACGCTCGTTCGGGTAGTTCACCATGATCTTGCTTACCCATGGGTG
GCTCGACTGGGCTGGAGACCCGCTTCTAACTGTACGCTACATCAAGAGGG
AAGCTTGTGCAGAGAAGAAGACCAAGATCGAACCGGCCGTCAGCTTGTCT
GCCCTCGCGGCTGACTCTGACGACGAGCTTTGAGGCGTTCGTTTTCAGCT
GCTTGACCTTGCCCCTGTTCTTGAGAAGAGGACTTTCGTCGATCATGACA
TATGCGCGGGGATGTGTGCACGTGGGGCAGCAGGAGTGACTGTGCGGTCG
TTTGGTGCTGTGCTAGGGGTACACTATGGCGTTCCATGGCGATGTGTTCC
ATGTTCTCAGTCTCCTCTCATGATCTGTGTTGCTCGTGATAGAGCAGCGC
TGTTGGAAAGCCTTCGAACGACGTGGGCATAATTTTTCCTTCCATTTTTT
TTGTGCTGAAACTGATATACAAAAGTATCGCCGCCGCTAACACTCTCAAG
CGGGTGTTGCCTTTTGATCGCCCGCAGGCTCAAAGATGCCCTAACCCCCG
CCCCACCCTGTACGTTGCCCTATCATGCTCTGGCACTGCAGGGCGGCGGA
AATGTTCATGTCCAAGAGCAAATCCTTCGGCGGAATCCCGCTCACCATGT
CTTGGTACACGGGACCGTTCCCAGGATCAGCCCCGGCATCATCCCAACCG
CCAAGGCGACCCCATCAGGGACAATTTGGATCAGCCCCTACGGCAGGGAG
CTTTCAGCAGGCCGCTCCCGTCATCAGTGACGGTGCTGGCGACAGCATTG
AGCTCAAACTTGCTCCCGTCCAACAAGGGGTGGGCATGGGGGGTCCGCGA
GGTGGCGGCGGCTGGGGTGACGACTTCGGCAAGGAGGAGGGTGTT

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig744:3207..5451+

>mRNA_E_fasciculatus_S2_contig744.15611.1 ID=mRNA_E_fasciculatus_S2_contig744.15611.1|Name=mRNA_E_fasciculatus_S2_contig744.15611.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=330bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig744:3207..5451+ (Ectocarpus fasciculatus EfasUO2)
ATGCTTGACCGTCCTGGCGAGGGCGTCGTCAAGTTTGCGGAGAGATGGGC
GGCGGAAATGTTCATGTCCAAGAGCAAATCCTTCGGCGGAATCCCGCTCA
CCATGTCTTGGTACACGGGACCGTTCCCAGGATCAGCCCCGGCATCATCC
CAACCGCCAAGGCGACCCCATCAGGGACCAGGGAGCTTTCAGCAGGCCGC
TCCCGTCATCAGTGACGGTGCTGGCGACAGCATTGAGCTCAAACTTGCTC
CCGTCCAACAAGGGGTGGGCATGGGGGGTCCGCGAGGTGGCGGCGGCTGG
GGTGACGACTTCGGCAAGGAGGAGGGTGTT