mRNA_E_fasciculatus_S2_contig7430.15608.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7430.15608.1
Unique NamemRNA_E_fasciculatus_S2_contig7430.15608.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7430.15608.1 vs.
Match: AB (hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCH7_9PHAE)

HSP 1 Score: 578 bits (1491), Expect = 2.810e-206
Identity = 292/325 (89.85%), Postives = 300/325 (92.31%), Query Frame = 1 
Query:    1 MWIESGSLAELAFFPVMVVAIASGVSLLCTVLLWRTQKVSRDTAACFDRIERVGFQSDPQLRSLDKSVALSVPPLPXXXXXXXXXXXXXVLPRKKPFEKGLVLIGGFGDMPHMWEGLAERASKAGWYTLAPRTPGWGRTDFREANKVCWTDWVLACRDSLAVARGLCDEVTVVAHSTGAPVTALVAETQPIDRLIFTGPNFLSQAGDRWAKKLLLRPVVGPLVTKYLGTVVKKRRRGRPVDSLNVASYETAFYLTCLPVHTLRQMWILQDKLSRPWRVSGEVLMLMGEADESVAPLLEQADFVRGYVPEDVSFRACSIPSAYQAL 975
            MW E+GSL ELAF PVMVVAIASGVSLLCTVLLWRTQKV RDTAACFDRIE VGF+SDPQLR+LDKS+ALSVPPLP             VLPRKKPFEKGLVLIGGFGDMP MWEGLAERASKAGWYTLAPRTPGWGRTDFREANKVCWTDWVLACRD LAVARGLCDEVTVVAHSTGAPV ALVAETQPIDRLIFTGPNFLSQAGDRWAKKLLLRPVVGPLVTKYLG VVKKRR+GRPVDSLNVASYETA+YLTCLPVHTLRQMWILQDKLSRPWRVSGEVLMLMGE+DESVAPLLEQADFVRGYVPEDVSFRACSIP+A   L
Sbjct:    1 MWTETGSLTELAF-PVMVVAIASGVSLLCTVLLWRTQKVCRDTAACFDRIEMVGFRSDPQLRALDKSIALSVPPLPPPTAATPGAARA-VLPRKKPFEKGLVLIGGFGDMPCMWEGLAERASKAGWYTLAPRTPGWGRTDFREANKVCWTDWVLACRDGLAVARGLCDEVTVVAHSTGAPVAALVAETQPIDRLIFTGPNFLSQAGDRWAKKLLLRPVVGPLVTKYLGAVVKKRRKGRPVDSLNVASYETAYYLTCLPVHTLRQMWILQDKLSRPWRVSGEVLMLMGESDESVAPLLEQADFVRGYVPEDVSFRACSIPNAAHGL 323
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BLAST of mRNA_E_fasciculatus_S2_contig7430.15608.1 vs.
Match: Alpha/beta (fold hydrolase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PUS4_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 1.050e-15
Identity = 60/187 (32.09%), Postives = 93/187 (49.73%), Query Frame = 1 
Query:  271 LPRKKPFEKGLVLIGGFGDMPHMWEGLAERASKAGWYTLAPRTPGWGRTD----FREANKVCWTDWVLACRDSLAVARGLCDEVTVVAHSTGAPVTALVAETQPIDRLIFTGPNFLSQAGDRWAKKLLLRPVVGPLVTKYLGTVVKKRRRGR--PVDSLNVASYETAFYLTCLPVHTLRQMWILQDK 813
            LP  KP++  ++L+ GF      ++ L +   +AG   LAP  PG+G TD     +EAN+    DWV A  D+L + + L +EV+VV HS G  V+  +     +  LI + P     A D   K +L RP         +  + K  R GR  P D+L+       F    +PVH++RQ++ LQ++
Sbjct:   96 LPGPKPYKHAVLLLHGFTASTQEFDTLTDMLREAGIPYLAPMIPGFG-TDRACVLKEANR---RDWVRAATDNLELLQDLAEEVSVVGHSLGGMVSTAITRDHKVKNLILSAPGLYPTASDIKYKVMLTRPYFAKAYMALIPYLPKPIRPGRVSPSDTLDEERCLGVFQYLAVPVHSVRQLFKLQNE 278
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BLAST of mRNA_E_fasciculatus_S2_contig7430.15608.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUH9_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.040e-15
Identity = 40/97 (41.24%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:  676 YLGTVVKKR-RRGRPVDSLNVASYETAFYLTCLPVHTLRQMWILQDKLSRPWRVSGEVLMLMGEADESVAPLLEQADFVRGYVPEDVSFRACSIPSA 963
            +L  ++KKR R GRP D++NV  ++T F+L   P++ +RQMW LQ+ LS+ WRV  EV+ LMG+ D SV PL+EQ +    ++  +    A  + +A
Sbjct:    2 FLKPIIKKRTRNGRPTDTVNVYHHQTGFFLKDFPLNAIRQMWKLQECLSKKWRVE-EVVFLMGDEDLSVGPLMEQVEHTSKFITRETKVHAEVVKNA 97
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7430.15608.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
AB2.810e-20689.85hydrolase-1 domain-containing protein n=2 Tax=Ecto... [more]
Alpha/beta1.050e-1532.09fold hydrolase n=1 Tax=Phycisphaerales bacterium T... [more]
Hypothetical2.040e-1541.24protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7430contigE_fasciculatus_S2_contig7430:3116..7343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score76.6
Seed ortholog evalue2.4e-11
Seed eggNOG ortholog1485543.JMME01000014_gene281
Preferred nameest
Model size1023
KEGG koko:K03928
Hectar predicted targeting categorysignal anchor
Exons5
EggNOG free text desc.Serine aminopeptidase, S33
EggNOG OGs1TQ7X@1239,4H3ZP@909932,COG1647@1,COG1647@2
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-12_005570.1
EC3.1.1.1
Cds size1023
COG Functional cat.S
Best tax levelNegativicutes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842406.2736738-CDS-E_fasciculatus_S2_contig7430:3115..32851696842406.2736738-CDS-E_fasciculatus_S2_contig7430:3115..3285Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7430 3116..3285 +
1696842406.2850208-CDS-E_fasciculatus_S2_contig7430:4560..48421696842406.2850208-CDS-E_fasciculatus_S2_contig7430:4560..4842Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7430 4561..4842 +
1696842406.294439-CDS-E_fasciculatus_S2_contig7430:5358..55321696842406.294439-CDS-E_fasciculatus_S2_contig7430:5358..5532Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7430 5359..5532 +
1696842406.3040519-CDS-E_fasciculatus_S2_contig7430:6277..64581696842406.3040519-CDS-E_fasciculatus_S2_contig7430:6277..6458Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7430 6278..6458 +
1696842406.3135142-CDS-E_fasciculatus_S2_contig7430:7127..73431696842406.3135142-CDS-E_fasciculatus_S2_contig7430:7127..7343Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7430 7128..7343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7430.15608.1prot_E_fasciculatus_S2_contig7430.15608.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7430 3116..7343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7430.15608.1

>prot_E_fasciculatus_S2_contig7430.15608.1 ID=prot_E_fasciculatus_S2_contig7430.15608.1|Name=mRNA_E_fasciculatus_S2_contig7430.15608.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=341bp
MWIESGSLAELAFFPVMVVAIASGVSLLCTVLLWRTQKVSRDTAACFDRI
ERVGFQSDPQLRSLDKSVALSVPPLPPPVATPAGAAAGAVLPRKKPFEKG
LVLIGGFGDMPHMWEGLAERASKAGWYTLAPRTPGWGRTDFREANKVCWT
DWVLACRDSLAVARGLCDEVTVVAHSTGAPVTALVAETQPIDRLIFTGPN
FLSQAGDRWAKKLLLRPVVGPLVTKYLGTVVKKRRRGRPVDSLNVASYET
AFYLTCLPVHTLRQMWILQDKLSRPWRVSGEVLMLMGEADESVAPLLEQA
DFVRGYVPEDVSFRACSIPSAYQALVSKLMVVVSKLILVVV
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mRNA from alignment at E_fasciculatus_S2_contig7430:3116..7343+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7430.15608.1 ID=mRNA_E_fasciculatus_S2_contig7430.15608.1|Name=mRNA_E_fasciculatus_S2_contig7430.15608.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4228bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7430:3116..7343+ (Ectocarpus fasciculatus EfasUO2)
ATGTGGATAGAGAGCGGTAGCTTGGCAGAGCTGGCCTTCTTCCCCGTGAT
GGTTGTCGCGATCGCCTCCGGCGTGTCCCTGCTGTGCACGGTCCTTCTCT
GGCGCACCCAGAAAGTCTCCCGCGACACGGCCGCTTGCTTCGACCGCATC
GAGAGGGTGGGCTTCCAAAGGTCAGTCAGTTGTCAGTTGTCAGTTGCAAC
CAAACAACGACGGCGGTGCAATTGAAGCCAAGGGGGTAGTGTCGATGTAC
TTTTGCTCCCGACGGTCGCGTGCGTTTCTCAAAAGCTTTGTGGCGACGAT
GCATCAATATTTGTTCGATACTTTCGGCATATGATTATGGCGTACATCCA
CACGTGTCTGTGTGTCTTTCATCGGCATGTGCATAATACAAACACAACTC
TCACCACAATCTCTGTACCCTTTGTACTCTGAGGCGCACCAGTGGACGCC
ATACATCGTTGGGTCATCGGGTGGGAGATCTCCTACCTGTATGTGCGTTT
CGCGCAAAGTTCACATCTAGACTATGTCGAGCTTACCCGCGCATGCTCTC
TTAAAAGAGTCAGTGATATTTTGCGTTGACACGAGCCGAGATGGCGGTGT
TCGGAACCACCTCGACGTTGCTGTGCGTCCACGTATCATGAGTGTTGCTG
TCTTCTGAAGACCGGAGCTAGGCATGCTCCAAACAATTTCTACAACCGCC
CACAACGCGGGCGGTAGCACGTAAGTCCCGAAGAGATGTTATTTCATTCA
TCCTCTCACGTCACGCCCTTTTTGGTGGTCGACGGTACGGGGCCAAATAA
TGCAAAAACAGGAGCCAAAAGAGAGAGTTGGAAGTTGGACTCAGCAGGTC
GTTCGTTCGGCACCTCCGCACCCCGGGGGCTCTGTGTGGCATGTTGCTAT
GATACATCTTAACATCTTAAAAACATACGACCGTTTGCCTTGTTGGGTGA
GAGAGAGAAAGAGAGATTGTACGACGACACGGCTTGGAAAAGTTTATTTG
CATTTGTTGTGCCGACTGCAATATATTTTGTTTTCCGCATTAGACTACTA
CTGCGTACCAAGATTACGATTTGAACCAGGGGTTCCTCTCTCTCTCTCTG
GCCCGTGATATTGACCTCCAGGTTCATTTCTACCCCACATGGCGTGCAAG
AGGCGAGCAGAGAGCTAGCTCTGTTGTAGACTATTTGCCGTTGATGTCAA
TTGGCTTGCGGACCATTTTGTTTGAGTATACGTTTTTCAGGGTAAGTTAG
CCTGTGACTACGGGAATCGACCGGTCAAGTCTTTTTTATCAGCACGGACA
GATGAAGGTGTACTGCGTAGAGAGATCGGAACGGTTTTTGATGTGAAGAC
AACAATAACAAACAACAACAAAACCCCCCTCCCCCAATCCCACTCGCGTT
TCCTCTCCATGTACCACCCCATGCCTCTACACGCCCTGCGAACAGCGACC
CCCAGCTGCGATCTCTGGACAAGTCCGTCGCTCTGTCGGTGCCGCCGCTG
CCGCCGCCGGTGGCGACGCCGGCGGGGGCGGCGGCGGGGGCGGTGCTACC
CCGAAAGAAGCCGTTCGAGAAGGGCCTCGTGCTCATCGGTGGGTTCGGAG
ACATGCCCCACATGTGGGAAGGGCTGGCGGAGAGAGCCTCCAAGGCCGGG
TGGTACACGCTGGCTCCTCGCACGCCCGGCTGGGGCAGGACCGACTTCAG
AGAGGCCAACAAAGTTTGTTGGACAGAGTGAGTTTTTGTTTGTGTGTTTC
TCTTCCTCCGGGATTGGAGTGACGGTTCCCTGGGGTGGCGAGGAGACCAG
TCGCCATCCCTCGACATCGTGCGTGATGTTGTGACGCCGTTTTTGTTTTT
GGGCGTGGGCGTGGGGTGTGGGGGCCAGAATATGTCGCGCTGAATAGACT
CGAGAGGTACAACAGTAACGAGTCCCTGGTGGTTGGCTGCATCCTTGTCA
ACCGCGTCGTTTTCCGCCCCTGTGTACGCCACTTCGTCGAACAACCCTGA
CGACAACGGCATTCGCACCTCTCTTACCCACCAATTTTTGTCCTGGGTGT
AGCATTCTGCTCCAGATGACTAAACGCGACTTGGCGCTTGCCCCTCTGCC
CCCCGCTTCCATCTGCCCCAATCAAACCACTCTCACTTGAGCTCTTGCCC
TCTCCTCCCCTCCCCTCCCCTCCCCTCCCCGTGCGCGTCAAAAATCACCA
CGACCAATACAAACACCCGGACGGTGATGACAAAAAACAACAGTTGGGTG
CTGGCCTGCCGGGACAGCCTGGCCGTGGCGCGGGGGCTGTGCGACGAGGT
GACGGTGGTAGCCCACAGCACGGGCGCCCCCGTGACCGCGTTGGTGGCCG
AGACCCAACCTATCGACCGGCTCATCTTCACGGGGCCCAACTTCCTCTCG
CAGGCGGGCGATCGCTGGTGAGCTTACCTTAGGCAGCGTAGGATACCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCTCCCC
CTTCTCCTCATCACCCTGCCACAATCAAATTTTGTACGTTTCGAGACGGT
TTCTACGCCTACATTTTCGGCACCGTGAGTGTTTGTGCTGCAGAGTAGTC
GAGCTTTGAATGTGGTCCCAGGGGGTGTGGTATCTTGCGCAACCTTCGTT
TTTACGCACTAACCACACACACCGCCGTCGGTATGCAGCTCCTTCATGTG
CTGTTTTTTCTGTTTTTCTTTCTGTGGATGAACAATTGATCAAGAGTAAA
CGACCGGGTTTGCTCGTGTATGGTGGAAGCGAGGTTGCTTGCAGGGGTAA
GGGGAATCGTGTGGGGCCATTGTGGTGGTGGTGGGGGGGTCATCGGCGAC
CCTCTTCGTTGTCTGGTCGACTGGTGAAGGAGGGGGCTGGAGGGGTTTCG
CTGAAGGCGCAGTGTTTGGAACGTGTATGCACACCGTGGTTACGACTGTA
CGGCGCAACGCCAAGGAGCGAACGATACTTGACACACACGCATATGCACG
CCCACCTACATGAGAGCGTGCCACAAAAAAACACCCGCCCGACACTCCCT
TCCTTTTTCCCGTGTGCGTCTGGGTCAATCACAATTCCACGCAAACAACA
CTGACATCAACAACGCCAACAACAACAACGATGACGATGACAATTTTACA
ACGGCGATGAAGGGCGAAGAAGCTGCTGTTGAGACCGGTCGTGGGGCCCC
TGGTGACCAAGTACCTGGGCACGGTGGTGAAGAAGAGGAGAAGGGGCAGA
CCGGTGGACAGCCTCAACGTGGCCTCCTACGAGACCGCGTTCTACCTCAC
CTGCCTGCCCGTGCACACGCTTAGACAGATGTGGATCCTGCAGGTATTAA
CTTCTGCTGCTTGCAGACAGCAAGAGCGTGTTGTTGTGGTTGTGCGTCGA
TCGGGAGTTTGCTGGTCAAGAAAATCAAAGTCGTCAACCCCCCCCGCCCC
TCGGTAGGACTAGCGGTTGCTTATCATGCTTTGGTTGTGCAAGTACTGTA
GGACACACACGTGCACATCGGAGCTGCTGTTGCCGCTGCGGTTGCTGCTG
CGGGTTTTGTGTCTTCTCGTGTGGGTACCTGGCTTGCACGTCAGGACAGC
GTTTCCCAAAAAGGTCGCTGACATGACAGAGCTGGCTTGGCCTCCACGAC
TGAGACTGAGAAATGCTGTAAACCTTAACCTTTCGCAAGCAAACACAAAT
GGACACCGCGCAAGCAAACACAAGCGGACACGGCGCAAGCAAACACAAGC
GGACACGGCGCAAACAAACACAAGCGGGCACGGCGCAAGCAAACACAAGC
GGACACGGAGCAATCAAACAGCGGTGCATAGGTCGGCGGCGGCGGTGGTG
GTGGCGGCGGCCGACGAGAGAAAGAAGGACGTTCCATGAGCGTTGGTGTT
AGAACAAACCGTACGCGCGTACGAAAAAGCGTGAAGCTAAGCACAAAATA
ACAAATGCGTCCAACAATACGTGGCTCTCGGTCTTTCCTGTCTGTCTGAT
CCGAAAAATCAGGATAAGCTTTCGCGGCCGTGGCGAGTGTCCGGCGAGGT
GCTGATGCTGATGGGGGAGGCGGACGAGTCGGTGGCGCCGCTCCTGGAGC
AAGCGGACTTCGTGAGGGGTTACGTGCCGGAGGATGTGTCGTTCCGGGCG
TGCTCGATCCCAAGTGCGTACCAGGCTTTGGTGTCGAAGTTGATGGTGGT
GGTGTCGAAGTTGATTTTGGTGGTGGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7430:3116..7343+

>mRNA_E_fasciculatus_S2_contig7430.15608.1 ID=mRNA_E_fasciculatus_S2_contig7430.15608.1|Name=mRNA_E_fasciculatus_S2_contig7430.15608.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1023bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7430:3116..7343+ (Ectocarpus fasciculatus EfasUO2)
ATGTGGATAGAGAGCGGTAGCTTGGCAGAGCTGGCCTTCTTCCCCGTGAT
GGTTGTCGCGATCGCCTCCGGCGTGTCCCTGCTGTGCACGGTCCTTCTCT
GGCGCACCCAGAAAGTCTCCCGCGACACGGCCGCTTGCTTCGACCGCATC
GAGAGGGTGGGCTTCCAAAGCGACCCCCAGCTGCGATCTCTGGACAAGTC
CGTCGCTCTGTCGGTGCCGCCGCTGCCGCCGCCGGTGGCGACGCCGGCGG
GGGCGGCGGCGGGGGCGGTGCTACCCCGAAAGAAGCCGTTCGAGAAGGGC
CTCGTGCTCATCGGTGGGTTCGGAGACATGCCCCACATGTGGGAAGGGCT
GGCGGAGAGAGCCTCCAAGGCCGGGTGGTACACGCTGGCTCCTCGCACGC
CCGGCTGGGGCAGGACCGACTTCAGAGAGGCCAACAAAGTTTGTTGGACA
GATTGGGTGCTGGCCTGCCGGGACAGCCTGGCCGTGGCGCGGGGGCTGTG
CGACGAGGTGACGGTGGTAGCCCACAGCACGGGCGCCCCCGTGACCGCGT
TGGTGGCCGAGACCCAACCTATCGACCGGCTCATCTTCACGGGGCCCAAC
TTCCTCTCGCAGGCGGGCGATCGCTGGGCGAAGAAGCTGCTGTTGAGACC
GGTCGTGGGGCCCCTGGTGACCAAGTACCTGGGCACGGTGGTGAAGAAGA
GGAGAAGGGGCAGACCGGTGGACAGCCTCAACGTGGCCTCCTACGAGACC
GCGTTCTACCTCACCTGCCTGCCCGTGCACACGCTTAGACAGATGTGGAT
CCTGCAGGATAAGCTTTCGCGGCCGTGGCGAGTGTCCGGCGAGGTGCTGA
TGCTGATGGGGGAGGCGGACGAGTCGGTGGCGCCGCTCCTGGAGCAAGCG
GACTTCGTGAGGGGTTACGTGCCGGAGGATGTGTCGTTCCGGGCGTGCTC
GATCCCAAGTGCGTACCAGGCTTTGGTGTCGAAGTTGATGGTGGTGGTGT
CGAAGTTGATTTTGGTGGTGGTG
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