mRNA_E_fasciculatus_S2_contig7429.15604.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7429.15604.1
Unique NamemRNA_E_fasciculatus_S2_contig7429.15604.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7429.15604.1 vs.
Match: N/a (n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX0_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 8.030e-31
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:    4 AAGSSSKQKSFGLSRSLAWIQETNFEDKFEVVKVIGQGSIGEVSIVRRKSLSSSAHGGSAHGRVSSFFD 210
            A G+S+KQKSFGLSRSLAWIQETNFEDKFEVVKVIGQGSIGEVSIVRRKSL SSAHGGSAHGRV+SFFD
Sbjct:   58 APGNSTKQKSFGLSRSLAWIQETNFEDKFEVVKVIGQGSIGEVSIVRRKSLCSSAHGGSAHGRVNSFFD 126
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BLAST of mRNA_E_fasciculatus_S2_contig7429.15604.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ0_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.050e-6
Identity = 22/38 (57.89%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:   37 GLSRSLAWIQETNFEDKFEVVKVIGQGSIGEVSIVRRK 150
            GL+++L W+QE + ++++EV+ VIG+GSIGEVS+VRRK
Sbjct:   22 GLAKNLVWLQEKSLQERYEVLDVIGKGSIGEVSVVRRK 59
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7429.15604.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
N/a8.030e-3192.75n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX0_ECTSI[more]
Uncharacterized1.050e-657.89protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7429contigE_fasciculatus_S2_contig7429:5671..7175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size213
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842405.7690134-CDS-E_fasciculatus_S2_contig7429:5670..57801696842405.7690134-CDS-E_fasciculatus_S2_contig7429:5670..5780Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7429 5671..5780 +
1696842405.7807562-CDS-E_fasciculatus_S2_contig7429:7074..71741696842405.7807562-CDS-E_fasciculatus_S2_contig7429:7074..7174Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7429 7075..7174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7429.15604.1prot_E_fasciculatus_S2_contig7429.15604.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7429 5671..7174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7429.15604.1

>prot_E_fasciculatus_S2_contig7429.15604.1 ID=prot_E_fasciculatus_S2_contig7429.15604.1|Name=mRNA_E_fasciculatus_S2_contig7429.15604.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=70bp
AAAGSSSKQKSFGLSRSLAWIQETNFEDKFEVVKVIGQGSIGEVSIVRRK
SLSSSAHGGSAHGRVSSFFD
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mRNA from alignment at E_fasciculatus_S2_contig7429:5671..7175+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7429.15604.1 ID=mRNA_E_fasciculatus_S2_contig7429.15604.1|Name=mRNA_E_fasciculatus_S2_contig7429.15604.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1505bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7429:5671..7175+ (Ectocarpus fasciculatus EfasUO2)
GCGGCGGCGGGTAGCAGCTCCAAGCAGAAGAGCTTCGGCCTGAGCCGCAG
CCTGGCGTGGATCCAGGAGACCAACTTCGAGGACAAGTTCGAGGTCGTCA
AGGTTATCGGGTACGTACGTACGTGGGGGGGGGGGGGGGGGGGGCCCCCG
AAAAGGCCCCCCACCCCCAGGGGGAAAGGGGGGGGTGTTTTTTTTTTTTG
GAAGGGAAAAAANNNNNNNNNNGGTGGGGGGGTAAACAAAAAAAAAATGG
AAGGAAAGGTGGGGGGGGTGGATAGGGAGGGGGGGTGGGGGGGGGGGGGG
GGGGGGGGGGGGGGCGACCACGAAAAGGCTCCACACCGCCAGGTGCAATG
AGCGCGTTGTCTGTTTTTTTAGGAACGGAAGAAAGATTTCACCGCCACTT
ACAAGCGCGCGGTCTGCTTTTTGGAAAAGAACGAGGAGAGGCTGTTGTTT
GGGGCCTCTGTTGTCGCAGCTCTGGTCGTGTGGAGCTGTTATGCGGCACG
AGAGTCGTCCTGGTCGATTGAATCCCATGAACGAACGACTGTTCACGTCG
TGCAATTTGTACCATCGGTTCTACACAAATGTTCAAATTTCGACCCCTGT
CCCAGTAGTGGAATCGATCCATCCGGAAGAGAACCTGCGCTTTGGCCCGT
GCTCCCGCGTGCGCGCATGCTGTTGTGGTGCCTCTCGTGCTTGGACCGTG
CTCGTTGGAGTGTAGCGAGAAGAGTCCTGATGTAGGGGAGACGATCGTTT
CCAGCAACTTCAATCCCGTGTATTCTTTTGAACGCGTTGCAGCACGCACC
GGTTCACGCTCTCATTGATAGAGACAGGCGCCGCTTAGGGAGCCACCACT
ACCACCATCGGTGGCGGCGGCGGGCGAGAGAGAAACCTCGTCCCAGGCTG
TAGCTATGGTTCGAGTAGACACAAACTTGAGAGCCGCCGGGCAAGCACCA
AAACACGGGGCCTTGGCCGTATCTCGCGTAGCAAGAGCATGCACCACCCG
CTGCGGGACATGGCTATAACCAAAAAGACACGGCACGAGCACTCGCTTTT
TGGCTCCGGTACCGAGCAAGGTTTTTGGAGCGGAGCGAAGAAATTGCGTA
TCTTTGTGCGATATCAACAGGTATATAGCATGTTTTTGACAGGAGACGGG
TTCTCGTTACCATGGGCGAAGGCCTTCGGGTGGCACCACTCGTGCCTACA
GCTCTTCGAATATGCCATTTTTTTACGTCCACCCGCACGTGTGCGCTGTC
GCGGCGTGCTCCCATTTCTATTCTACCTGCGTGCGTGCCCCCCTGCTTCC
CTTGCCACCACTCTGTTTACTTTCGATACCCTGTACTATACCCGTTCCCT
GCCCTCTTTTTCTCTCTTGTCATTTGCGCTCTGTTTTTAACACTCTCAAA
CTAGGCAAGGGAGCATTGGCGAGGTGTCCATCGTCCGACGGAAGTCGCTC
AGCTCTAGCGCGCACGGCGGCAGCGCCCACGGCCGTGTGAGCAGCTTCTT
CGACG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7429:5671..7175+

>mRNA_E_fasciculatus_S2_contig7429.15604.1 ID=mRNA_E_fasciculatus_S2_contig7429.15604.1|Name=mRNA_E_fasciculatus_S2_contig7429.15604.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=210bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7429:5671..7175+ (Ectocarpus fasciculatus EfasUO2)
GCGGCGGCGGGTAGCAGCTCCAAGCAGAAGAGCTTCGGCCTGAGCCGCAG
CCTGGCGTGGATCCAGGAGACCAACTTCGAGGACAAGTTCGAGGTCGTCA
AGGTTATCGGGCAAGGGAGCATTGGCGAGGTGTCCATCGTCCGACGGAAG
TCGCTCAGCTCTAGCGCGCACGGCGGCAGCGCCCACGGCCGTGTGAGCAG
CTTCTTCGAC
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