mRNA_E_fasciculatus_S2_contig7428.15602.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7428.15602.1
Unique NamemRNA_E_fasciculatus_S2_contig7428.15602.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7428.15602.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT4_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 7.060e-89
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   10 QYLDRKLEAHLKLDWYNEQAVKSEARRQANQPPDWICLLLQRDRDARRAWQLLKAVQTSGWGGSSSKPKPAKGQLQNPEKEAYVDSAALAESQLELQEERAAQGLSNEPTPSFEVEEVDDWETLDDLPGDKPTEAA 417
            QYLDRKLEAHLKLDWYNEQAVKSEARRQANQPPDWICLLLQRDRDARRAWQLLKAVQTSGWGGSSSKPKPAKGQLQNPEKEAYVDSAALAES+LELQEERAAQGLSNEPTPSFEVEEVDDWETLDDLPGD+PTE A
Sbjct:   37 QYLDRKLEAHLKLDWYNEQAVKSEARRQANQPPDWICLLLQRDRDARRAWQLLKAVQTSGWGGSSSKPKPAKGQLQNPEKEAYVDSAALAESKLELQEERAAQGLSNEPTPSFEVEEVDDWETLDDLPGDEPTETA 172
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7428.15602.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized7.060e-8997.79protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT4... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7428contigE_fasciculatus_S2_contig7428:5114..7440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size453
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001340.1
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842405.605046-UTR-E_fasciculatus_S2_contig7428:5113..51461696842405.605046-UTR-E_fasciculatus_S2_contig7428:5113..5146Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7428 5114..5146 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842405.6148877-CDS-E_fasciculatus_S2_contig7428:5146..51911696842405.6148877-CDS-E_fasciculatus_S2_contig7428:5146..5191Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7428 5147..5191 -
1696842405.6236494-CDS-E_fasciculatus_S2_contig7428:5817..59431696842405.6236494-CDS-E_fasciculatus_S2_contig7428:5817..5943Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7428 5818..5943 -
1696842405.6323607-CDS-E_fasciculatus_S2_contig7428:6355..64991696842405.6323607-CDS-E_fasciculatus_S2_contig7428:6355..6499Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7428 6356..6499 -
1696842405.6463175-CDS-E_fasciculatus_S2_contig7428:7335..74401696842405.6463175-CDS-E_fasciculatus_S2_contig7428:7335..7440Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7428 7336..7440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7428.15602.1prot_E_fasciculatus_S2_contig7428.15602.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7428 5147..7440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7428.15602.1

>prot_E_fasciculatus_S2_contig7428.15602.1 ID=prot_E_fasciculatus_S2_contig7428.15602.1|Name=mRNA_E_fasciculatus_S2_contig7428.15602.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=140bp
MIHQYLDRKLEAHLKLDWYNEQAVKSEARRQANQPPDWICLLLQRDRDAR
RAWQLLKAVQTSGWGGSSSKPKPAKGQLQNPEKEAYVDSAALAESQLELQ
EERAAQGLSNEPTPSFEVEEVDDWETLDDLPGDKPTEAA*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7428:5114..7440-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7428.15602.1 ID=mRNA_E_fasciculatus_S2_contig7428.15602.1|Name=mRNA_E_fasciculatus_S2_contig7428.15602.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2327bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7428:5114..7440- (Ectocarpus fasciculatus EfasUO2)
ATGATACACCAGTATTTGGACAGAAAGCTGGAGGCTCACCTGAAGTTGGA
CTGGTACAACGAGCAGGCGGTCAAGAGCGAGGCCCGTCGCCAGGCCAACC
AGCCGGTGAGCACCAAAAAAAGAAGGAAAAAGGCATGCATCACTGCTGTG
CCCTCCGGTGTGCACTCTTTCACTATACTATGCATAGTGTGCCCGTCGTG
CCGGAAGTCTAGTTAGTATCCTCGAAAACCTTCCACGGGTCAGGGGTTCG
AATCCCGGCGTAAGCGAACTCTTCTTGCAACGTGAGTTTTTCTTTCGCTT
CTGTTGCTGGCCTGGGTGGAAAGTGGTATGCGCTAGTGCGTGTGGACACA
AAAGAGAGGACAAGATAAATAAGAGATTGCTGCACTCTTGTCGCTTTAAA
AATCGAAGGAAGGAAGGCAATCTACCCCTGGGGTAGTTAGGGGGGGCTCA
GGGAGAGGAGAGGAACCTTTACCCTTCCGTATGACCACGGGTTGGAGTAA
AACGGCACAAGCGCTGTGAGCGCTATTTTCAAGTGATATATATATATATA
TATATTTGCTAGTCGGTGGGTGAACCAGACGCAAAAATATGCCCATCTGT
GTGCAACTTCGAAGTATTCAGCAGGCTTTCTTCCTCACTCACTGCAAAGA
CTCCAACACATGCCCTTCGACTGCTGTGGTATTATCTACCTCTAGAAGTA
GAACGGTTATTGTTATGGGTATGGATATGCATGCATACGGCGTATTGTCG
TCTTTTTTGCGGAATAGAGAGAGGGCGCTGGAGAGGAATCGACCGCCCGA
ACCAACGCCCCACCAATCAAAAGCTAAGGCGTCAAGAGCCTTCGTCCTAC
AGATCCCCTATCAATATGTAATCAGTACTGCCCACACACTCTGCCGCTCT
CCCCTGTCGCTCGTTTTCTGTTATTTTCGATTTCTCCGCAGCCCGACTGG
ATCTGCCTTCTGCTCCAGAGGGACCGCGACGCTCGCCGCGCGTGGCAGCT
GCTGAAGGCGGTTCAAACCTCCGGCTGGGGGGGCTCCTCGTCCAAGCCCA
AGCCGGCCAAGGGGCAGCTTCAGAACCCCGAAAAGGTAAGACGGGCGTTG
TTGACTGCCGTCCAAGCACCCACCCCCCCCCTCCCACCGAGGCATGCCGC
GACAGGGGTCTTCTTTTCTTGCGCCTCACACGTAGATACACCCGAGTACC
GTGTGTAAGGATCGCGACTTCGAGATTCCACAGGCGGCATTTTTGTAGCA
AAACCGATACGATGGTTTTAGAAACCGTTGATTTTACTTTTGGGGTACAT
CGCAACCACGTTTTTTTTAACAATGCGGTCGTATTGAAACGATCTCTAAA
AACCTTGGGAGCACCTTTTACCCGCGAACATGAATCCTCTTTCCCTTGGT
TCCCCTCCATTTCATTGTAGGTGCACTTCTGTCAGCCCGACATGTTTGTT
TCCAAACCTCAACCCCTCGCTGTTGTTACGGCGATTTTCCCCCTCAGGAA
GCATACGTCGACTCGGCGGCCCTTGCGGAGAGCCAGCTGGAACTCCAGGA
GGAGCGTGCGGCACAGGGGCTGAGCAACGAGCCCACACCCTCCTTTGAAG
TCGAAGAGGTCGACGACTGGGAGGTGAGGAGGTTGTGCGGGGGGGGGGGA
GGGGACTAGGGGGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAC
GATAGCTCGTATGCCGTTCGTGTGAAGAGCGGGGAGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGTGACTAGGGAGT
GTTTCCCTTGTTCTTGTTGACTTGACGTCCCTGGTTGTTCTAGACTTGAG
CAAAACCACATAATAGGTTGGAACCATTGCAGTCGGAGAGGCATGTCTCC
GATGATGATGTTTCCGGGTACTAATCGTGTCGTTGACACTCCGAAGTTGT
TTGTAGACTCCCGCTACGCTCCCAGCCGGTCTCCCCCCCAAACACAGGTG
TAGATGTAGAGCGAGAGCAAGTCTAGCTTGAAAGCTGAGTCCATGACGTA
TGTTCCGTCGAAAACCAGTCGGTTGCAATCACTGGTCCTTCACAACATCA
GCAAACCGCTCGTGGCGTGGCGATACCTTCAACTCGGCCGAGTTTCGTTC
GACTTGACGCTTACAATACCACCATGCTGCCTCTATCTCTGTAACCGTTT
TTCGTAACGCCTCTTTTTGTGACGGTTTTGCGTCGTGCCTCTTCCGCAGA
CCCTGGACGATCTTCCCGGGGACAAGCCGACGGAGGCGGCCTGAAGTGGT
TCGCCCTCTCCGTCGATTTTGGCACAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7428:5114..7440-

>mRNA_E_fasciculatus_S2_contig7428.15602.1 ID=mRNA_E_fasciculatus_S2_contig7428.15602.1|Name=mRNA_E_fasciculatus_S2_contig7428.15602.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=420bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7428:5114..7440- (Ectocarpus fasciculatus EfasUO2)
ATGATACACCAGTATTTGGACAGAAAGCTGGAGGCTCACCTGAAGTTGGA
CTGGTACAACGAGCAGGCGGTCAAGAGCGAGGCCCGTCGCCAGGCCAACC
AGCCGCCCGACTGGATCTGCCTTCTGCTCCAGAGGGACCGCGACGCTCGC
CGCGCGTGGCAGCTGCTGAAGGCGGTTCAAACCTCCGGCTGGGGGGGCTC
CTCGTCCAAGCCCAAGCCGGCCAAGGGGCAGCTTCAGAACCCCGAAAAGG
AAGCATACGTCGACTCGGCGGCCCTTGCGGAGAGCCAGCTGGAACTCCAG
GAGGAGCGTGCGGCACAGGGGCTGAGCAACGAGCCCACACCCTCCTTTGA
AGTCGAAGAGGTCGACGACTGGGAGACCCTGGACGATCTTCCCGGGGACA
AGCCGACGGAGGCGGCCTGA
back to top