mRNA_E_fasciculatus_S2_contig7427.15600.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7427.15600.1
Unique NamemRNA_E_fasciculatus_S2_contig7427.15600.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7427.15600.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK8_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 6.240e-66
Identity = 161/354 (45.48%), Postives = 204/354 (57.63%), Query Frame = 1 
Query:    1 SVMIRPLFALEDVVLYIFVAVRSFFFWIFLSVYSRAMDVPGLSNLPRPPSSSPHIAAGS-SXXXXXXXXXXXXXXXXXXNNRVSRSRSAWSTRGRIVEGILSIFVCVYLWRASGVSPL-PSLAAILLTGAL-GFSVFIAVLEALSELSELHAPSSIVFDVLHKVC---RLWSLRSPMSHEERTDLGGVDLFEYDYFQTLSNFRAFTLGAMGLPAILAYFSFASFDFFASLASQVALIYFV----ALVYLYACCGGV---FLCYHPFIRKATFGKISKWQHHCINQPRCRHVRVFLLATGTIYMVLLYVSDVPSGWTSSLIMTHSTRLLSLLVALRGDNETVADAAEEVVEHVQE 1023
            ++M R LF+LED+VLYI VAVRS+  WI  S Y RAM+VPGLS++ R  SSSP IAAG  +                  N+RVS SRSAWSTRG IVEG+L   VC Y  R  G+ PL P     +  GA+    V   V  A  EL  L   S+ V  V H      R+  L S       T+L G+D  EYD+FQ + +F  FT   + +P  L     AS      L S ++L++ V     ++ +Y  C  +    L Y PFI+ A +G+  +W+  C+ QPRCRHVR FLLA G IY VLL++S  PS WT SLI+THSTRLLSLL+ALRGDNE VA+AA E+V HV E
Sbjct:   27 TIMSRSLFSLEDIVLYIVVAVRSYVVWILSSTYYRAMNVPGLSDVLRQVSSSPRIAAGPPAAPPSPAELSPSAPPRSSCNHRVSESRSAWSTRGCIVEGVLFTVVCGYWMR--GLWPLDPLTLGKMFAGAIFRLPVQYIVHHAFPELRWLW--SAQVVSVEHTNIDGERVVLLNS-------TNLDGIDPSEYDFFQKVYSFVVFTFALVTIPGDLG----ASIS--VVLISHLSLVFSVFQVAVVIVIYFSCWTICLTHLLYRPFIKTAIYGRFFQWELICMTQPRCRHVRAFLLAGGMIYAVLLHLSPAPSKWTWSLIVTHSTRLLSLLIALRGDNEGVANAAGEIVAHVPE 363
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7427.15600.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized6.240e-6645.48protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7427contigE_fasciculatus_S2_contig7427:3211..4438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1032
Hectar predicted targeting categorysignal peptide
Exons2
Cds size1026
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842405.4673297-UTR-E_fasciculatus_S2_contig7427:3210..32161696842405.4673297-UTR-E_fasciculatus_S2_contig7427:3210..3216Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7427 3211..3216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842405.4851942-CDS-E_fasciculatus_S2_contig7427:3216..34601696842405.4851942-CDS-E_fasciculatus_S2_contig7427:3216..3460Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7427 3217..3460 +
1696842405.4977653-CDS-E_fasciculatus_S2_contig7427:3656..44381696842405.4977653-CDS-E_fasciculatus_S2_contig7427:3656..4438Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7427 3657..4438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7427.15600.1prot_E_fasciculatus_S2_contig7427.15600.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7427 3217..4438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7427.15600.1

>prot_E_fasciculatus_S2_contig7427.15600.1 ID=prot_E_fasciculatus_S2_contig7427.15600.1|Name=mRNA_E_fasciculatus_S2_contig7427.15600.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=342bp
MIRPLFALEDVVLYIFVAVRSFFFWIFLSVYSRAMDVPGLSNLPRPPSSS
PHIAAGSSSAPSAPAGLARAPPRPSGNNRVSRSRSAWSTRGRIVEGILSI
FVCVYLWRASGVSPLPSLAAILLTGALGFSVFIAVLEALSELSELHAPSS
IVFDVLHKVCRLWSLRSPMSHEERTDLGGVDLFEYDYFQTLSNFRAFTLG
AMGLPAILAYFSFASFDFFASLASQVALIYFVALVYLYACCGGVFLCYHP
FIRKATFGKISKWQHHCINQPRCRHVRVFLLATGTIYMVLLYVSDVPSGW
TSSLIMTHSTRLLSLLVALRGDNETVADAAEEVVEHVQEVG*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7427:3211..4438+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7427.15600.1 ID=mRNA_E_fasciculatus_S2_contig7427.15600.1|Name=mRNA_E_fasciculatus_S2_contig7427.15600.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1228bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7427:3211..4438+ (Ectocarpus fasciculatus EfasUO2)
TCCGTGATGATCAGACCCCTGTTCGCTCTCGAAGACGTTGTTCTCTACAT
CTTCGTGGCCGTGCGGTCCTTCTTCTTCTGGATCTTCTTAAGCGTCTACA
GCAGAGCGATGGACGTCCCTGGCTTGTCCAACCTTCCCCGTCCACCGTCG
TCGTCTCCCCATATTGCTGCGGGTTCGTCCTCTGCCCCTTCGGCACCTGC
GGGTCTGGCACGAGCACCGCCTCGGCCTTCAGGTAACAATCGTGTTTCAC
GTCGGTGTATACACAGTCTACTGCTTTAGTAGGGAGGCATGAAGGTTCTG
CTGCGTGCCCCAGAAGGAATTTTGGACGAAAGCAACCCGTTGGTACCCCG
TGGACGTAGGGTTCTCACACACATAGGCATAACAGAGATAAAAGGTTAGA
CTACCACTAAAAGAGTTCGAACGATGGTGCGTGTCATATCCCACAGGAAG
TCGCAGCGCTTGGAGTACTCGTGGGCGCATTGTGGAAGGCATCCTTTCCA
TTTTTGTTTGTGTGTACTTGTGGAGAGCAAGTGGGGTGAGCCCTCTACCC
TCCTTGGCAGCCATATTACTTACCGGAGCGTTGGGGTTTTCAGTGTTTAT
CGCTGTATTGGAGGCGCTTTCCGAGCTCAGCGAGTTGCATGCACCGTCAT
CCATAGTCTTCGATGTGCTTCACAAGGTTTGTCGACTGTGGAGCTTACGG
TCACCCATGAGCCATGAGGAAAGAACTGATCTTGGTGGCGTAGACCTTTT
CGAGTATGACTATTTTCAGACTCTTAGTAATTTCCGTGCGTTCACGCTTG
GAGCTATGGGGTTACCTGCCATCCTTGCGTATTTTAGTTTTGCATCGTTT
GATTTCTTTGCTTCTCTTGCTTCTCAAGTTGCGCTTATTTATTTCGTAGC
TTTGGTGTATTTGTACGCTTGTTGCGGTGGCGTTTTCCTTTGTTATCATC
CCTTCATTAGAAAGGCCACGTTCGGCAAGATTTCCAAGTGGCAACATCAT
TGCATCAACCAGCCAAGATGTAGACACGTGCGAGTTTTCCTCCTAGCAAC
CGGCACGATCTACATGGTGTTGTTGTACGTATCTGACGTGCCTTCCGGGT
GGACCTCGAGCTTGATCATGACACACTCCACCAGGCTATTGAGTCTCTTG
GTTGCCCTCCGAGGTGACAACGAAACCGTAGCAGACGCAGCTGAAGAGGT
CGTGGAGCACGTGCAGGAAGTCGGATAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7427:3211..4438+

>mRNA_E_fasciculatus_S2_contig7427.15600.1 ID=mRNA_E_fasciculatus_S2_contig7427.15600.1|Name=mRNA_E_fasciculatus_S2_contig7427.15600.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1026bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7427:3211..4438+ (Ectocarpus fasciculatus EfasUO2)
ATGATCAGACCCCTGTTCGCTCTCGAAGACGTTGTTCTCTACATCTTCGT
GGCCGTGCGGTCCTTCTTCTTCTGGATCTTCTTAAGCGTCTACAGCAGAG
CGATGGACGTCCCTGGCTTGTCCAACCTTCCCCGTCCACCGTCGTCGTCT
CCCCATATTGCTGCGGGTTCGTCCTCTGCCCCTTCGGCACCTGCGGGTCT
GGCACGAGCACCGCCTCGGCCTTCAGGTAACAATCGTGTTTCACGAAGTC
GCAGCGCTTGGAGTACTCGTGGGCGCATTGTGGAAGGCATCCTTTCCATT
TTTGTTTGTGTGTACTTGTGGAGAGCAAGTGGGGTGAGCCCTCTACCCTC
CTTGGCAGCCATATTACTTACCGGAGCGTTGGGGTTTTCAGTGTTTATCG
CTGTATTGGAGGCGCTTTCCGAGCTCAGCGAGTTGCATGCACCGTCATCC
ATAGTCTTCGATGTGCTTCACAAGGTTTGTCGACTGTGGAGCTTACGGTC
ACCCATGAGCCATGAGGAAAGAACTGATCTTGGTGGCGTAGACCTTTTCG
AGTATGACTATTTTCAGACTCTTAGTAATTTCCGTGCGTTCACGCTTGGA
GCTATGGGGTTACCTGCCATCCTTGCGTATTTTAGTTTTGCATCGTTTGA
TTTCTTTGCTTCTCTTGCTTCTCAAGTTGCGCTTATTTATTTCGTAGCTT
TGGTGTATTTGTACGCTTGTTGCGGTGGCGTTTTCCTTTGTTATCATCCC
TTCATTAGAAAGGCCACGTTCGGCAAGATTTCCAAGTGGCAACATCATTG
CATCAACCAGCCAAGATGTAGACACGTGCGAGTTTTCCTCCTAGCAACCG
GCACGATCTACATGGTGTTGTTGTACGTATCTGACGTGCCTTCCGGGTGG
ACCTCGAGCTTGATCATGACACACTCCACCAGGCTATTGAGTCTCTTGGT
TGCCCTCCGAGGTGACAACGAAACCGTAGCAGACGCAGCTGAAGAGGTCG
TGGAGCACGTGCAGGAAGTCGGATAG
back to top