mRNA_E_fasciculatus_S2_contig741.15586.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig741.15586.1
Unique NamemRNA_E_fasciculatus_S2_contig741.15586.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig741.15586.1 vs.
Match: Kinesin (motor domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH6_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 7.480e-41
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 2
Query:    2 NQTQRSSLKGTLHLVDLAGSERLSRSNATGDRLKETVAINKSLSSLTDVFVSISNKSSHIPFRNSKLTYLLQPALSGDGKT 244
            NQTQRSSLKGTLHLVDLAGSERLSRSNATGDRLKETVAINKSLSSLTDVFVSISNKSSHIPFRNSKLTYLLQPALSGDGKT
Sbjct: 1159 NQTQRSSLKGTLHLVDLAGSERLSRSNATGDRLKETVAINKSLSSLTDVFVSISNKSSHIPFRNSKLTYLLQPALSGDGKT 1239          
BLAST of mRNA_E_fasciculatus_S2_contig741.15586.1 vs.
Match: KIN14N (protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VBW2_SYMMI)

HSP 1 Score: 116 bits (291), Expect = 7.370e-31
Identity = 60/73 (82.19%), Postives = 67/73 (91.78%), Query Frame = 2
Query:   23 LKGTLHLVDLAGSERLSRSNATGDRLKETVAINKSLSSLTDVFVSISNKSSHIPFRNSKLTYLLQPALSGDGK 241
            LKG L+LVDLAGSERL RS ATG R+KET+AINKSLSSLTDVFV+I+NK +HIPFRNSKLT+LLQP LSGDGK
Sbjct:  143 LKGALNLVDLAGSERLDRSGATGSRMKETLAINKSLSSLTDVFVAIANKQAHIPFRNSKLTHLLQPCLSGDGK 215          
BLAST of mRNA_E_fasciculatus_S2_contig741.15586.1 vs.
Match: Kinesin-like (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KBB7_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.470e-30
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 2
Query:    2 NQTQRSSLKGTLHLVDLAGSERLSRSNATGDRLKETVAINKSLSSLTDVFVSISNKSSHIPFRNSKLTYLLQPALSGDGKT 244
            N  Q+  LKG LHLVDLAGSERL+RS  +G R+ E VAIN+SLSSLTDVFV+ISNK  HIPFRNSKLTYLLQP+L G+GKT
Sbjct:  115 NPRQKQQLKGVLHLVDLAGSERLARSGVSGQRMTEAVAINRSLSSLTDVFVAISNKQKHIPFRNSKLTYLLQPSLIGNGKT 195          
BLAST of mRNA_E_fasciculatus_S2_contig741.15586.1 vs.
Match: Hypothetical (protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q435_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.510e-30
Identity = 65/81 (80.25%), Postives = 70/81 (86.42%), Query Frame = 2
Query:    2 NQTQRSSLKGTLHLVDLAGSERLSRSNATGDRLKETVAINKSLSSLTDVFVSISNKSSHIPFRNSKLTYLLQPALSGDGKT 244
            N   R +L+GTL+L DLAGSERL RS ATG R KETVAINKSLSSLTDVFVSI  K+SHIPFRNSKLTYLLQP+LSGDGKT
Sbjct:  973 NPESRQALRGTLNLCDLAGSERLDRSKATGARAKETVAINKSLSSLTDVFVSIGKKASHIPFRNSKLTYLLQPSLSGDGKT 1053          
BLAST of mRNA_E_fasciculatus_S2_contig741.15586.1 vs.
Match: Kinesin-like (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HL69_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.150e-30
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = 2
Query:    2 NQTQRSSLKGTLHLVDLAGSERLSRSNATGDRLKETVAINKSLSSLTDVFVSISNKSSHIPFRNSKLTYLLQPALSGDGKT 244
            N  Q   LKGTL LVDLAGSERL RS ATG++LKETVAINKSLS+L DVFV+I NK SHIPFRNSKLTYLLQ ALSGDGKT
Sbjct:  303 NAAQGICLKGTLSLVDLAGSERLDRSGATGEQLKETVAINKSLSALADVFVAIGNKQSHIPFRNSKLTYLLQSALSGDGKT 383          
BLAST of mRNA_E_fasciculatus_S2_contig741.15586.1 vs.
Match: Kinesin-like (protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G8N6_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.370e-30
Identity = 61/78 (78.21%), Postives = 69/78 (88.46%), Query Frame = 2
Query:   11 QRSSLKGTLHLVDLAGSERLSRSNATGDRLKETVAINKSLSSLTDVFVSISNKSSHIPFRNSKLTYLLQPALSGDGKT 244
            Q+ SLKGTL+LVDLAGSERL RS A+GD+ KET+AINKSLSSLT VFV++  K+SHIPFRNSKLTYLLQ  LSGDGKT
Sbjct:  193 QKQSLKGTLNLVDLAGSERLKRSEASGDKAKETMAINKSLSSLTSVFVALGKKNSHIPFRNSKLTYLLQNCLSGDGKT 270          
BLAST of mRNA_E_fasciculatus_S2_contig741.15586.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR54_9STRA)

HSP 1 Score: 119 bits (299), Expect = 6.490e-30
Identity = 61/81 (75.31%), Postives = 71/81 (87.65%), Query Frame = 2
Query:    2 NQTQRSSLKGTLHLVDLAGSERLSRSNATGDRLKETVAINKSLSSLTDVFVSISNKSSHIPFRNSKLTYLLQPALSGDGKT 244
            N    S+L+G LHLVDLAGSERL RS ATG RLKET AINKSLS+LTDVF +++NK++H+PFRNSKLTYLLQPALSG+GKT
Sbjct:  381 NAAAGSALRGALHLVDLAGSERLDRSGATGQRLKETQAINKSLSALTDVFTALANKTAHVPFRNSKLTYLLQPALSGEGKT 461          
BLAST of mRNA_E_fasciculatus_S2_contig741.15586.1 vs.
Match: Kinesin (motor domain-containing protein n=5 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7S4_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.190e-29
Identity = 62/81 (76.54%), Postives = 72/81 (88.89%), Query Frame = 2
Query:    2 NQTQRSSLKGTLHLVDLAGSERLSRSNATGDRLKETVAINKSLSSLTDVFVSISNKSSHIPFRNSKLTYLLQPALSGDGKT 244
            N+ +RS L G L+L DLAGSERLSRSNATG+RLKET AINKSLS+LTDVFV+I+NK +H+P+RNSKLTYLLQ  LSGDGKT
Sbjct:  957 NKERRSQLSGKLNLCDLAGSERLSRSNATGERLKETQAINKSLSALTDVFVAIANKQAHVPYRNSKLTYLLQQCLSGDGKT 1037          
BLAST of mRNA_E_fasciculatus_S2_contig741.15586.1 vs.
Match: Kinesin (motor domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BWK2_HYAAE)

HSP 1 Score: 113 bits (282), Expect = 2.180e-29
Identity = 60/74 (81.08%), Postives = 64/74 (86.49%), Query Frame = 2
Query:   23 LKGTLHLVDLAGSERLSRSNATGDRLKETVAINKSLSSLTDVFVSISNKSSHIPFRNSKLTYLLQPALSGDGKT 244
            L G L+LVDLAGSER SRSN +GDRLKET AINKSLS L DVF +I NKSSHIPFRNSKLTYLLQ +LSGDGKT
Sbjct:   27 LNGQLNLVDLAGSERASRSNVSGDRLKETQAINKSLSCLADVFTAIGNKSSHIPFRNSKLTYLLQSSLSGDGKT 100          
BLAST of mRNA_E_fasciculatus_S2_contig741.15586.1 vs.
Match: Kinesin-like (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BX78_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.940e-29
Identity = 61/81 (75.31%), Postives = 69/81 (85.19%), Query Frame = 2
Query:    2 NQTQRSSLKGTLHLVDLAGSERLSRSNATGDRLKETVAINKSLSSLTDVFVSISNKSSHIPFRNSKLTYLLQPALSGDGKT 244
            N   + +L+GTL+LVDLAGSERL RS  TG  +KE +AINKSLSSLTDVFVSI  KSSH+PFRNSKLTYLLQP+LSGDGKT
Sbjct:  505 NSKHKQNLRGTLNLVDLAGSERLKRSGVTGSMMKEAMAINKSLSSLTDVFVSIGKKSSHVPFRNSKLTYLLQPSLSGDGKT 585          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig741.15586.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Kinesin7.480e-41100.00motor domain-containing protein (Fragment) n=1 Tax... [more]
KIN14N7.370e-3182.19protein (Fragment) n=1 Tax=Symbiodinium microadria... [more]
Kinesin-like2.470e-3074.07protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
Hypothetical2.510e-3080.25protein n=2 Tax=Chaetoceros debilis TaxID=122233 R... [more]
Kinesin-like4.150e-3080.25protein (Fragment) n=1 Tax=Spumella elongata TaxID... [more]
Kinesin-like5.370e-3078.21protein (Fragment) n=1 Tax=Proboscia inermis TaxID... [more]
P-loop6.490e-3075.31containing nucleoside triphosphate hydrolase prote... [more]
Kinesin1.190e-2976.54motor domain-containing protein n=5 Tax=Monodopsid... [more]
Kinesin2.180e-2981.08motor domain-containing protein n=1 Tax=Hyaloperon... [more]
Kinesin-like2.940e-2975.31protein n=1 Tax=Proboscia inermis TaxID=420281 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig741contigE_fasciculatus_S2_contig741:3527..4562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size247
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842403.780945-CDS-E_fasciculatus_S2_contig741:3526..37041696842403.780945-CDS-E_fasciculatus_S2_contig741:3526..3704Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig741 3527..3704 +
1696842403.7924762-CDS-E_fasciculatus_S2_contig741:4493..45611696842403.7924762-CDS-E_fasciculatus_S2_contig741:4493..4561Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig741 4494..4561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig741.15586.1prot_E_fasciculatus_S2_contig741.15586.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig741 3527..4561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig741.15586.1

>prot_E_fasciculatus_S2_contig741.15586.1 ID=prot_E_fasciculatus_S2_contig741.15586.1|Name=mRNA_E_fasciculatus_S2_contig741.15586.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=82bp
QPDSAVVPEGHPALGGPRRQREAKPLQRNGRPPQGNGGDQQVPQLAHRRV
RVHLQQELAHPLPKLEAHVPAAARPLRRRQDP
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mRNA from alignment at E_fasciculatus_S2_contig741:3527..4562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig741.15586.1 ID=mRNA_E_fasciculatus_S2_contig741.15586.1|Name=mRNA_E_fasciculatus_S2_contig741.15586.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1036bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig741:3527..4562+ (Ectocarpus fasciculatus EfasUO2)
CAACCAGACTCAGCGGTCGTCCCTGAAGGGCACCCTGCACTTGGTGGACC TCGCCGGCAGCGAGAGGCTAAGCCGCTCCAACGCAACGGGAGACCGCCTC AAGGAAACGGTGGCGATCAACAAGTCCCTCAGCTCGCTCACCGACGTGTT CGTGTCCATCTCCAACAAGAGCTCGCACGTGAGTAGAGTAGAAGGGTAAG GGTAAGGGTCGGACGCTTGTGACGCAGCTATTTAGGCTTTAGGACTCGGT ACTATTTAGGCGATTGCCTTGATTTTTTAAAAGAAAATACAAATACAAAC ACGGAAAGACTACCCGGCCGAGACAGAACCGAATCATATTTTGCTGTCGA TATGGGTGATTATAACTGAAAGTAAGAAAGGTTAGTGTATCGAAATGGCG AAAAAATCGCCTACCGAGCACAAGCCTAATCGCCGCCTGCTCTGTCTTTT AAGGAGAACCCTTAATTTTGCCGGTTCGGCGTGTGTAGGTCATCGCTGGT TGGTGGGAGGATTTGACTTGTATTGGTCGCGATTGTTTAGCGATGCATGT CACACAATCCGGTTGAACCGGTCATAGTTCCGAAGCAGATCGAGTTTTCG GGGAAGTGGTAAATCTCTAACAACCACGGCACTACTGCGTTCCATGCTTT GCTCCTTGAGTTGCTCCTTGAGTTTTTAGTTGTTCCTTTTCCCGAGGTAG AGGTAGTCTAGAGATGATGCCAATGCCACCTTGTTGTTCGCTCCGCCTAG GTTGTTACAATCACCTCCATGGTACGGTATACCTAACAATTGCTCTCCTT CTGTCTCTTGTCTGTTTCTCCCTCTCCTTCCCTCTCTGTCTCTCTCTGCC CCGGCTCTCTCTCTCTACCAATTGCTCTCCTTCTGTCTCTTGTCTGTTTC TCCCTCTCCTTCCCTCTCTGCCTCTCTCTGCCCCGGCTCTCTCTCTCTCT CCTCTCCCTCTCGTCAGATCCCCTTCCGAAACTCGAAGCTCACGTACCTG CTGCAGCCCGCCCTCTCCGGCGACGGCAAGACCCTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig741:3527..4562+

>mRNA_E_fasciculatus_S2_contig741.15586.1 ID=mRNA_E_fasciculatus_S2_contig741.15586.1|Name=mRNA_E_fasciculatus_S2_contig741.15586.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=246bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig741:3527..4562+ (Ectocarpus fasciculatus EfasUO2)
CAACCAGACTCAGCGGTCGTCCCTGAAGGGCACCCTGCACTTGGTGGACC
TCGCCGGCAGCGAGAGGCTAAGCCGCTCCAACGCAACGGGAGACCGCCTC
AAGGAAACGGTGGCGATCAACAAGTCCCTCAGCTCGCTCACCGACGTGTT
CGTGTCCATCTCCAACAAGAGCTCGCACATCCCCTTCCGAAACTCGAAGC
TCACGTACCTGCTGCAGCCCGCCCTCTCCGGCGACGGCAAGACCCT
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