mRNA_E_fasciculatus_S2_contig7406.15583.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7406.15583.1
Unique NamemRNA_E_fasciculatus_S2_contig7406.15583.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7406.15583.1 vs.
Match: GT8 (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L312_9PHAE)

HSP 1 Score: 669 bits (1727), Expect = 2.250e-237
Identity = 344/385 (89.35%), Postives = 355/385 (92.21%), Query Frame = 1 
Query:    1 QDPSTDPNRGPDAPLLDHSCHRLPTRYNGDLALVMLNGGLGMVRTKNAMPEDWWRQRRARVVRFEFAGLRPWMWFAAPFLPFVSSWESTHLRAKPGDPTPSVFWVVLVWLAFVAAFLFGGRAVLVPVVSRGMISKAETPSKRAWGWRAWVPRALAWKRKRRGSSASSYNPRGLLWSLVHLAVGYSSLLGAVAVGVAQVPAASTVKMSWIVFITWTGTLFGTLWSAYLWFISRQPQLSPRAFMIGNGTLDLASINTNLCSVAAGGGGNS---TDPFKPKLVGGGGSAAGSVLKVGGVVPPSPWRESVRSLALFVAVLAFLPAWKPMSGAASLPALLVPAALALVAMFVGLTVQMVRLPVLWCDRLKFLSLMEKEGLRPCGSCGRVD 1146
            QDPSTDPNRGPDAPLLDHSCHRLPTRYNGDLALVMLNGGLGMVRTKNAMPE+WWRQRRARVVRFEFAGLRPWMWFA+PFLPFVS+WESTHLRAKPGDPTPSVFWVVLVWLAFV AFLF GR VLVPVVS G ISKAE PSK A GWRAWVPRALAWKRKRRGSSASSYNPRGLLWSLVHLAVGYSSLL AVAVG+AQVPAASTVKMSW+VFITWTGTLFGTLWSAYLWFISRQPQLSPRAFMIGNG LDL +INTNLC +  G        TDPFK KL GGG SAAGSVLKVG VV PSPWRESV SLALFVAVLAFLPAWKPMSGAASLP LLVPAA+ALV MFVGLTVQMVRLPVLWCDRLKFL+LMEK+GLRPCGSCGRV+
Sbjct:  263 QDPSTDPNRGPDAPLLDHSCHRLPTRYNGDLALVMLNGGLGMVRTKNAMPEEWWRQRRARVVRFEFAGLRPWMWFASPFLPFVSTWESTHLRAKPGDPTPSVFWVVLVWLAFVVAFLFCGRTVLVPVVSAG-ISKAEVPSKCAGGWRAWVPRALAWKRKRRGSSASSYNPRGLLWSLVHLAVGYSSLLCAVAVGLAQVPAASTVKMSWMVFITWTGTLFGTLWSAYLWFISRQPQLSPRAFMIGNGPLDLPNINTNLCPLPGGXXXXXXXXTDPFKSKLAGGG-SAAGSVLKVGCVVTPSPWRESVTSLALFVAVLAFLPAWKPMSGAASLPTLLVPAAVALVVMFVGLTVQMVRLPVLWCDRLKFLALMEKKGLRPCGSCGRVE 645
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BLAST of mRNA_E_fasciculatus_S2_contig7406.15583.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXV5_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.640e-22
Identity = 50/92 (54.35%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:   16 DPNRGPDAPL-LDHSCHRLPTRYNGDLALVMLNGGLGMVRTKNAMPEDWWRQRRARVVRFEFAGLRPWMWFAAPFLPFVSSWESTHLRAKPG 288
            DP  G D    +D +CHRLPTRY+GDL LV+LNGGL MVR +N MP++WW  RRAR+V F  AGL P  W +APFLP    W  +   A  G
Sbjct:  195 DPQSGYDEQAAIDTTCHRLPTRYSGDLLLVVLNGGLSMVRAQNKMPDEWWTARRARLVVFNLAGLTPAWWASAPFLPMTQIWHQSVADANAG 286
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BLAST of mRNA_E_fasciculatus_S2_contig7406.15583.1 vs.
Match: Glycogenin (n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IBU6_KLENI)

HSP 1 Score: 56.2 bits (134), Expect = 6.130e-5
Identity = 36/113 (31.86%), Postives = 49/113 (43.36%), Query Frame = 1 
Query:   49 DHSCHRLPTRYNGDLALVMLNGGLGMVRTKNAMPEDWWRQRRARVVRFEFAGLRPWMWFAAPFLPFVSSWESTHLRAKPGDPTPSVFWV--------VLVWLAFVAAFLFGGR 363
            D + HRLPTR+NGD+ L +LN    MV       +D       RV+ F    L+PW W+ A  L  V  WE+   R     P     W         +L  L F+ + L G +
Sbjct:  225 DETAHRLPTRFNGDVGLYVLNSNKWMV-------DD----SLLRVIHFTLGPLKPWDWWTAYILNPVDRWEAYRQRLPASIPGVGAGWTHHVSRTVTLLAVLPFLVSILLGRK 326
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7406.15583.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
GT82.250e-23789.35protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Uncharacterized3.640e-2254.35protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Glycogenin6.130e-531.86n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7406contigE_fasciculatus_S2_contig7406:4583..7504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score696.4
Seed ortholog evalue7.3e-198
Seed eggNOG ortholog2880.D7FP94
Model size1152
KEGG rclassRC00005,RC00171
KEGG koko:K00750
KEGG ReactionR00292,R03681
KEGG Pathwayko00500,ko01100,map00500,map01100
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Glycosyl transferase family 8
EggNOG OGsCOG5597@1,KOG1950@2759
Ec32 ortholog descriptionGlycosyltransferase, family GT8
Ec32 orthologEc-08_000290.1
EC2.4.1.186
Cds size1152
COG Functional cat.M
CAZyGT8
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842403.5886362-CDS-E_fasciculatus_S2_contig7406:4582..51201696842403.5886362-CDS-E_fasciculatus_S2_contig7406:4582..5120Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7406 4583..5120 -
1696842403.6043375-CDS-E_fasciculatus_S2_contig7406:5709..58681696842403.6043375-CDS-E_fasciculatus_S2_contig7406:5709..5868Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7406 5710..5868 -
1696842403.614875-CDS-E_fasciculatus_S2_contig7406:6651..68311696842403.614875-CDS-E_fasciculatus_S2_contig7406:6651..6831Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7406 6652..6831 -
1696842403.6249385-CDS-E_fasciculatus_S2_contig7406:7229..75041696842403.6249385-CDS-E_fasciculatus_S2_contig7406:7229..7504Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7406 7230..7504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7406.15583.1prot_E_fasciculatus_S2_contig7406.15583.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7406 4583..7504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7406.15583.1

>prot_E_fasciculatus_S2_contig7406.15583.1 ID=prot_E_fasciculatus_S2_contig7406.15583.1|Name=mRNA_E_fasciculatus_S2_contig7406.15583.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=384bp
QDPSTDPNRGPDAPLLDHSCHRLPTRYNGDLALVMLNGGLGMVRTKNAMP
EDWWRQRRARVVRFEFAGLRPWMWFAAPFLPFVSSWESTHLRAKPGDPTP
SVFWVVLVWLAFVAAFLFGGRAVLVPVVSRGMISKAETPSKRAWGWRAWV
PRALAWKRKRRGSSASSYNPRGLLWSLVHLAVGYSSLLGAVAVGVAQVPA
ASTVKMSWIVFITWTGTLFGTLWSAYLWFISRQPQLSPRAFMIGNGTLDL
ASINTNLCSVAAGGGGNSTDPFKPKLVGGGGSAAGSVLKVGGVVPPSPWR
ESVRSLALFVAVLAFLPAWKPMSGAASLPALLVPAALALVAMFVGLTVQM
VRLPVLWCDRLKFLSLMEKEGLRPCGSCGRVDY*
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mRNA from alignment at E_fasciculatus_S2_contig7406:4583..7504-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7406.15583.1 ID=mRNA_E_fasciculatus_S2_contig7406.15583.1|Name=mRNA_E_fasciculatus_S2_contig7406.15583.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2922bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7406:4583..7504- (Ectocarpus fasciculatus EfasUO2)
CAGGACCCATCCACAGATCCGAACCGTGGGCCAGACGCCCCGCTCCTGGA
CCACAGCTGCCACCGCCTCCCAACTCGGTACAACGGAGACCTGGCCCTGG
TGATGCTGAACGGCGGCCTGGGCATGGTTCGGACGAAGAACGCCATGCCC
GAGGACTGGTGGCGGCAGCGGCGGGCTAGGGTGGTGAGGTTCGAGTTTGC
GGGCCTCCGGCCGTGGATGTGGTTCGCGGCGCCGTTTCTGCCCTTCGTAT
CCTCGTGGGAGAGCACGCACTTGAGGTGGGTGTGTGCGGCCGGGCTGGGT
TACTCACCACCATTGACCCCGCATCCCTACAAAGCCGAGGCGGACTACTG
TGAACACCATGTTTTCTTGGCCCCTTTCTGTCTCCTCCTGTTTGTTGTGG
CTGTTGCTGTTGGCGATGGGGCGGCGGCGGCGTTCAGAGTCTTTCCGTGG
ACGACTCCGTGGACGACTCCCCGGTACGCGCGACTCAAACTGGCATGACA
CCTAACCCTAGTGATACCTGTACGGCGGGTTCCCGAGAGTTTTGTTCACA
CACCAACCACACGAACCTTCGTCTCGCCCGCGTGTCCCCCTTTCCCCGCG
TGTCCCTCTTTCCCTGCGTGTCCCCCTTTCCCTGCGTGTCCCCCTTCCCC
TGCGTGTCCCCCTTCCCCTGCAGGGCAAAGCCGGGCGATCCGACGCCCAG
CGTGTTCTGGGTGGTGCTGGTGTGGCTGGCGTTCGTGGCCGCTTTCCTGT
TCGGTGGGCGTGCCGTGCTCGTTCCCGTTGTTTCTCGCGGGATGATTTCC
AAAGCGGAAACGCCTTCCAAGCGCGCGTGGGGTTGGCGAGCGTGGGTGCC
ACGGTGAGAGAGAGGGGGGGGCAGAGAGAGCAGTGTGCGCAGGCGTCGGC
ATGCCCAGGCCCTTCGGCTGCACGTCTTGTGACGTTTCGACCTCGTCTTG
GGACGGTTCGCGCCGGTTTGTATCCGATGGGGTGCCGCTTGCATGGTCTA
CTGGTTGCACGACGTGAGAGGAAGACTAGGTGCTCTCAAGAGATATTGAT
CATGCCACGTGCGTGACGTTGTCAATTTACGATGTGTACGTCGGCCATGC
GGTGGCCTAGGTTGCCTGAGTTCAACATACGAAAAGAACATCGAATGTGC
GTAGTGACTACCACCTACCGCCTTCTTTTTGGCTTGCAGCCTTGAGGTAG
AATAGTACGTGTCTGAAGATACGTGCGATTCTACCTCCAGGGTGAACGGC
AAAAAGAAGTGGGTGGTAACAACTACGCAAATTCGCTGTTCTTTTCTTGA
AGTTGAAATTATCGCTGGCTGGGCTACCTAATGGTCAACATTTTACTTCT
TTCGTAGAACATGTATGAGAGCCCGGCTGATGTGATGCGCCAAACATACA
GATACACAGGAAGGTGTTCATAGTTCATGCCGGCGCGAGAGAACCGCACA
CACACGCAGTATTGTAGGCAGTCCTGGTTGGCTATTTTCAGTGTCACATG
CCTGGTGCGGAGTGGGCTGCCTGAAGCGTGTGTGTCTTGTTGTGGCGGAC
GGGTGCGGCTCGTGCGCTCACTGGTCTCGATGGTTTGCCCGCCACCGCGC
GTCCTTGTGCCACGGTGCCCCCTTTCGTCACATCAGGGCGCTAGCATGGA
AAAGGAAACGGCGAGGGAGTTCGGCAAGCAGCTACAACCCTCGAGGGTTG
CTGTGGAGCCTTGTCCATCTTGCTGTCGGGTACTCGTCGCTCTTGGGCGC
TGTCGCGGTTGGCGTAGCCCAGGTCCCTGCTGCGTCTACCGTAAAGTGAG
AATAAAGCCGGGGCTAAAATTCGCCCAAAATTGGTAGAATTGCAAGGATA
TGACGCCACCTCTGGTATCCACGACTATTTTTTTGTTTTGCGGTGGGCTG
GCCCCCCGCTCTGTGTGCATTGCTGTATTGCATCTCCTTTTTTCCTATCG
CGTCTCATGCAAGCATCACACGGGCTTGTCCGCGCTTCCGTTTTTTCCCC
AACGTTTTCGCAAGCACAGCATATCTCCGACAGTAGCTGTATCAGCGGTG
GATGGATAGACCACATGTTTTCATGCGTTTCCTGCATCGATCTCCTTTTC
GCCTCTCGTCAGTCTGCCCAGAACACCAAATAAAAGTAGATGATGAAGAA
AAAAGGACCGACCGACTTGCCACGCCCGACATGAGAGTTGTATATCTATA
ACTGCTGTTACGCGGGAGGTGTGCAGCACGTATCACGTATCGGCAACGTC
AACGTTAACGCTAACGTTAGCACGCCACCTTCCTTGTGTGCTCATGCCGT
GGCGACCCGTTCTTCTTCTGTTCATCTTGTTCTTTTTCGACAATGACGAC
GGCAACGATACCATCACAATCAAAACTCGAGCAGGATGAGCTGGATCGTG
TTCATCACGTGGACGGGAACGCTCTTCGGGACGCTGTGGTCCGCCTACCT
CTGGTTCATCTCCCGCCAGCCGCAGCTGTCCCCCCGCGCCTTCATGATCG
GCAACGGCACCCTCGACCTCGCCAGCATCAACACCAACCTCTGCTCCGTT
GCCGCCGGCGGCGGCGGCAACAGCACGGACCCCTTCAAGCCCAAGCTGGT
CGGCGGCGGGGGCTCCGCGGCGGGGAGCGTCCTCAAGGTAGGGGGGGTGG
TCCCGCCGTCCCCCTGGCGGGAGAGCGTGAGGAGCCTGGCGTTGTTCGTG
GCGGTGTTGGCGTTTCTGCCGGCGTGGAAGCCGATGTCGGGAGCGGCGAG
CCTGCCCGCCTTGCTGGTGCCGGCGGCTCTCGCGCTGGTGGCGATGTTCG
TAGGGCTGACGGTGCAGATGGTCCGCCTCCCCGTGCTGTGGTGCGACCGG
CTCAAGTTCTTGTCGCTCATGGAGAAGGAAGGGCTGCGGCCGTGCGGTAG
CTGTGGTAGAGTGGACTACTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7406:4583..7504-

>mRNA_E_fasciculatus_S2_contig7406.15583.1 ID=mRNA_E_fasciculatus_S2_contig7406.15583.1|Name=mRNA_E_fasciculatus_S2_contig7406.15583.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1152bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7406:4583..7504- (Ectocarpus fasciculatus EfasUO2)
CAGGACCCATCCACAGATCCGAACCGTGGGCCAGACGCCCCGCTCCTGGA
CCACAGCTGCCACCGCCTCCCAACTCGGTACAACGGAGACCTGGCCCTGG
TGATGCTGAACGGCGGCCTGGGCATGGTTCGGACGAAGAACGCCATGCCC
GAGGACTGGTGGCGGCAGCGGCGGGCTAGGGTGGTGAGGTTCGAGTTTGC
GGGCCTCCGGCCGTGGATGTGGTTCGCGGCGCCGTTTCTGCCCTTCGTAT
CCTCGTGGGAGAGCACGCACTTGAGGGCAAAGCCGGGCGATCCGACGCCC
AGCGTGTTCTGGGTGGTGCTGGTGTGGCTGGCGTTCGTGGCCGCTTTCCT
GTTCGGTGGGCGTGCCGTGCTCGTTCCCGTTGTTTCTCGCGGGATGATTT
CCAAAGCGGAAACGCCTTCCAAGCGCGCGTGGGGTTGGCGAGCGTGGGTG
CCACGGGCGCTAGCATGGAAAAGGAAACGGCGAGGGAGTTCGGCAAGCAG
CTACAACCCTCGAGGGTTGCTGTGGAGCCTTGTCCATCTTGCTGTCGGGT
ACTCGTCGCTCTTGGGCGCTGTCGCGGTTGGCGTAGCCCAGGTCCCTGCT
GCGTCTACCGTAAAGATGAGCTGGATCGTGTTCATCACGTGGACGGGAAC
GCTCTTCGGGACGCTGTGGTCCGCCTACCTCTGGTTCATCTCCCGCCAGC
CGCAGCTGTCCCCCCGCGCCTTCATGATCGGCAACGGCACCCTCGACCTC
GCCAGCATCAACACCAACCTCTGCTCCGTTGCCGCCGGCGGCGGCGGCAA
CAGCACGGACCCCTTCAAGCCCAAGCTGGTCGGCGGCGGGGGCTCCGCGG
CGGGGAGCGTCCTCAAGGTAGGGGGGGTGGTCCCGCCGTCCCCCTGGCGG
GAGAGCGTGAGGAGCCTGGCGTTGTTCGTGGCGGTGTTGGCGTTTCTGCC
GGCGTGGAAGCCGATGTCGGGAGCGGCGAGCCTGCCCGCCTTGCTGGTGC
CGGCGGCTCTCGCGCTGGTGGCGATGTTCGTAGGGCTGACGGTGCAGATG
GTCCGCCTCCCCGTGCTGTGGTGCGACCGGCTCAAGTTCTTGTCGCTCAT
GGAGAAGGAAGGGCTGCGGCCGTGCGGTAGCTGTGGTAGAGTGGACTACT
AA
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