mRNA_E_fasciculatus_S2_contig7406.15582.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7406.15582.1
Unique NamemRNA_E_fasciculatus_S2_contig7406.15582.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7406.15582.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP95_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 1.700e-62
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 1 
Query:    1 MDGLIPLLDRFITDPDTVHSVSSVIPGRIYVVKGRSELFKMTVRDTTNGFKALARKGTLGQEVFISTTKMGLDDVKAALNRAAGFDLEKGGSRREQKAGRKRR 309
            MDGLIPLLDRFITDPD V+SVSSVIPGRIYVVKGRSELFKMTVRDTTNGFKALARKGTLGQEVFISTTKM LDDVKAALNRAAGFDLEKGGSRREQKAGRKRR
Sbjct:    1 MDGLIPLLDRFITDPDAVNSVSSVIPGRIYVVKGRSELFKMTVRDTTNGFKALARKGTLGQEVFISTTKMNLDDVKAALNRAAGFDLEKGGSRREQKAGRKRR 103
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BLAST of mRNA_E_fasciculatus_S2_contig7406.15582.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X2_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 3.120e-59
Identity = 98/103 (95.15%), Postives = 99/103 (96.12%), Query Frame = 1 
Query:    1 MDGLIPLLDRFITDPDTVHSVSSVIPGRIYVVKGRSELFKMTVRDTTNGFKALARKGTLGQEVFISTTKMGLDDVKAALNRAAGFDLEKGGSRREQKAGRKRR 309
            MDGLIPLLDRFI DPD V+SVSSVIPGRIYVVKGRSELFKMTVRDTTNGFKALARKGTLGQEVFISTTKM L DVKAALNRAAGFDLEKGGSRREQKAGRKRR
Sbjct:   93 MDGLIPLLDRFIADPDAVNSVSSVIPGRIYVVKGRSELFKMTVRDTTNGFKALARKGTLGQEVFISTTKMDLGDVKAALNRAAGFDLEKGGSRREQKAGRKRR 195
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BLAST of mRNA_E_fasciculatus_S2_contig7406.15582.1 vs.
Match: Uncharacterized (protein n=1 Tax=Prochlorococcus marinus str. MIT 9201 TaxID=93057 RepID=A0A0A2A5S7_PROMR)

HSP 1 Score: 56.6 bits (135), Expect = 2.420e-8
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:    1 MDGLIPLLDRFITDPDTVHSVSSVIPGRIYVVKGRSE--LFKMTVRDTTNGFKALARKGTLGQEVFIST--TKMGLDDVKAALNR 243
            ++GLIP+L R   D +    + +V P  I  VKG++   +F+++V+ T NG+KA+ARKGT  QEVFIST  +K  L  +    NR
Sbjct:   12 IEGLIPILKRLALDTN----IKTVTPAVISRVKGKTSKLIFRISVK-TINGYKAIARKGTTAQEVFISTDLSKADLKQIIDTYNR 91
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BLAST of mRNA_E_fasciculatus_S2_contig7406.15582.1 vs.
Match: Uncharacterized (protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A2E1IQD1_9CYAN)

HSP 1 Score: 49.3 bits (116), Expect = 1.670e-5
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:    1 MDGLIPLLDRFITDPDTVHSVSSVIPGRIYVVKGRSELFKMTVR-DTTNGFKALARKGTLGQEVFIST 201
            +DGLIP L R  T+      + ++ P  I  VKGRS+L ++ V      G+K +ARKG++ QEVF+ T
Sbjct:   12 VDGLIPWLKRLATE----RRIQTITPAVINRVKGRSQLLQLRVSAPIRGGYKLMARKGSMVQEVFVVT 75
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BLAST of mRNA_E_fasciculatus_S2_contig7406.15582.1 vs.
Match: DUF2103 (domain-containing protein n=1 Tax=Synechococcus sp. KORDI-52 TaxID=585425 RepID=UPI00056F18D0)

HSP 1 Score: 47.4 bits (111), Expect = 9.340e-5
Identity = 27/69 (39.13%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:    1 MDGLIPLLDRFITDPDTVHSVSSVIPGRIYVVKGRSELFKMTVRDTTNG-FKALARKGTLGQEVFISTT 204
            +DGLIP L     + D    + ++ P  I  V+GRS + K+ V    +G +K +ARKG+L QEVF+ T+
Sbjct:   12 VDGLIPWLKALALETD----IQTITPAVISRVRGRSPVLKLRVSTPIHGGYKLVARKGSLAQEVFVVTS 76
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7406.15582.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized1.700e-6297.09protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.120e-5995.15protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.420e-842.35protein n=1 Tax=Prochlorococcus marinus str. MIT 9... [more]
Uncharacterized1.670e-541.18protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A... [more]
DUF21039.340e-539.13domain-containing protein n=1 Tax=Synechococcus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7406contigE_fasciculatus_S2_contig7406:655..1964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size312
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionProtein of unknown function DUF2103, metal-binding
Ec32 orthologEc-08_000280.1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842403.5252454-CDS-E_fasciculatus_S2_contig7406:654..7541696842403.5252454-CDS-E_fasciculatus_S2_contig7406:654..754Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7406 655..754 +
1696842403.5374064-CDS-E_fasciculatus_S2_contig7406:1309..14371696842403.5374064-CDS-E_fasciculatus_S2_contig7406:1309..1437Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7406 1310..1437 +
1696842403.5480227-CDS-E_fasciculatus_S2_contig7406:1880..19641696842403.5480227-CDS-E_fasciculatus_S2_contig7406:1880..1964Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7406 1881..1964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7406.15582.1prot_E_fasciculatus_S2_contig7406.15582.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7406 655..1964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7406.15582.1

>prot_E_fasciculatus_S2_contig7406.15582.1 ID=prot_E_fasciculatus_S2_contig7406.15582.1|Name=mRNA_E_fasciculatus_S2_contig7406.15582.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=104bp
MDGLIPLLDRFITDPDTVHSVSSVIPGRIYVVKGRSELFKMTVRDTTNGF
KALARKGTLGQEVFISTTKMGLDDVKAALNRAAGFDLEKGGSRREQKAGR
KRR*
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mRNA from alignment at E_fasciculatus_S2_contig7406:655..1964+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7406.15582.1 ID=mRNA_E_fasciculatus_S2_contig7406.15582.1|Name=mRNA_E_fasciculatus_S2_contig7406.15582.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1310bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7406:655..1964+ (Ectocarpus fasciculatus EfasUO2)
ATGGACGGGCTGATACCTCTTCTAGACCGCTTCATCACGGACCCGGACAC
CGTGCACAGTGTTTCCTCCGTCATTCCTGGAAGGATTTACGTCGTCAAGG
GTGAGCATTTTGCATCGGGGCTATATCTCAAGTGTCGTGATCAAGAAAGA
GGGGGGGAGAATGACAAGGTTTCACCCATCGTTTTGGTTGGTTGGTTCGT
CGAGCCGATAGATATACAGCGCTTCAGATTGCCCCTTCTCGATGGTTTTG
CGCTACCGCTGTGTGTCTACGCATATCTACCGGTGTACGTGGATGAGGCT
GTTGATGCCTCATTGCGGCCTTATCTCTCTAGCTCAAGAGCTCCGATCCG
GATTCACACAGCGAGAGCCCCTCCGCGCCGCATGTCTTGAAATGGAGCGT
TTCATGTTTCTCAAAGGAGGGCTGGCCTCATAGGAACAGAGTTCGTCTGA
AAACATGCGGGCAAGGGTGGTGTGAGGATGCATTGCGTCGGGCCAAATGT
CTCTATGACGCATGCTTGTGCCAAAATGGCACTTTACCACCGTCTACAAT
GCAATCGCTCGAGAGCCGCCCGCGTGGTCATTGCGATACGAATGTCGCTC
TTAGCTCCTCGGTCCCTACCACGCCCGACCGATTTGCCGCGTTCCATTCC
GTCAGGGAGGTCGGAACTTTTCAAGATGACGGTACGGGACACAACGAACG
GTTTCAAGGCGCTTGCTCGAAAAGGAACACTAGGCCAAGAGGTTTTCATC
AGCACAACCAAGATGGGCCTAGACGACGTAAAGGTGAGGGGGCCGCCGGA
GGAGTGGACCAACCAAACCACACCACATGGTCCGAGTAGTACCCTCACCG
TGGACGTGTGATACCCCCCCCCGCCCATGCAACCACCGTCGCCCCTTCGG
CCACCTAGGGCTTCATGATGAGGCCGCCGTATGAAGCGATAGGGCGGTGG
ACAGACATAGCAGGAGGGTCCGTTTGAAGCAAGACGAATGGCAGACCAGA
CCAATAACGTATTAGTTTGGGTTATGTACCTCACGGAACCGAGTCCTCTT
TCGCAGGCACGGTACCATGTTGTAGCCCCGCTTCCCTGTTTCTCGCTCCT
GCGGCCATACGTCGTCAATTTTTTTTAGCTACTGGCGACAACGTCACCGT
GTTGCGCATGACAAAATGGGCGCGCTGTCCTTGCTTCTCGCTCGGTGATC
CTGGTTTGTTCGTTTGTTCGAAGCAGGCAGCGTTAAATCGTGCGGCGGGT
TTCGACTTGGAGAAGGGCGGGTCCCGTCGCGAGCAGAAGGCGGGGCGGAA
GCGGCGATAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7406:655..1964+

>mRNA_E_fasciculatus_S2_contig7406.15582.1 ID=mRNA_E_fasciculatus_S2_contig7406.15582.1|Name=mRNA_E_fasciculatus_S2_contig7406.15582.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=312bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7406:655..1964+ (Ectocarpus fasciculatus EfasUO2)
ATGGACGGGCTGATACCTCTTCTAGACCGCTTCATCACGGACCCGGACAC
CGTGCACAGTGTTTCCTCCGTCATTCCTGGAAGGATTTACGTCGTCAAGG
GGAGGTCGGAACTTTTCAAGATGACGGTACGGGACACAACGAACGGTTTC
AAGGCGCTTGCTCGAAAAGGAACACTAGGCCAAGAGGTTTTCATCAGCAC
AACCAAGATGGGCCTAGACGACGTAAAGGCAGCGTTAAATCGTGCGGCGG
GTTTCGACTTGGAGAAGGGCGGGTCCCGTCGCGAGCAGAAGGCGGGGCGG
AAGCGGCGATAG
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