mRNA_E_fasciculatus_S2_contig7390.15569.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7390.15569.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA0_ECTSI) HSP 1 Score: 665 bits (1715), Expect = 5.640e-237 Identity = 334/373 (89.54%), Postives = 351/373 (94.10%), Query Frame = 1
Query: 1 MNQQRRPNAVRKPSQPFSCRRGIGAGMCYYAVDIEMVTIEGPDDLPARRAMVAAGVVNERLETLLYARVAVPRGCKVTDGVFARMQGGLLATWEEGIPASCVSDFLRRHVEEGGVVVGWELHNDLDVLGFERAASEIRNGKREALPTERAPIDSGSSLSFETWPGNGSSSSSSSTAHSRAVESPDAATV--VGRRRMRVVEVTDLFRTMNGLKCTLQEAYAHCFDRMEEGAHNAATDARMTMELFNLWRRTGEPPEPLGLPLSFFLVNFHSFKPSRSRQASLGMLRPDGGGAGGLGRGIHGALEQDSGSNTYKLKFRFQEGREAYLHCLERKMLSAGLAWEAAPEFVCGKKGARDGYQLSCGSFKMHVLERDR 1113
M QQR PNAVRKPSQPFSC RGI AG YYAVDIEMVTIEGP+DLPARRAMV+ GVV+ERLETLLY RVAVPRGCKVTDGVFARMQGGLLATWEEGIPASCVSDFL RHVEEGGV+VGWELH+DL+VLGFE+AAS+IR+G+RE LPTERAPID GS LSF+T PGNGS++SSSSTA SRAVESPDAA VGRRRMRVVEVTDLFRTMNGLKCTLQEAYAHCFDRMEEGAHNAA DARMTMELFNLWRR GEP EPLGLPLSFFLVNFHSFKPSRSRQASLGMLRP+GGGAGGLGRGIHGALE+DSGSNTYKLKFR +EGREAYLHCLERKML+AGLAWEAAPEFVCGKKGARDGYQLSCGSFKMHVLERDR
Sbjct: 1 MTQQRPPNAVRKPSQPFSCHRGIDAGARYYAVDIEMVTIEGPEDLPARRAMVSVGVVDERLETLLYGRVAVPRGCKVTDGVFARMQGGLLATWEEGIPASCVSDFLTRHVEEGGVLVGWELHSDLNVLGFEKAASQIRSGEREVLPTERAPIDGGS-LSFKTAPGNGSNTSSSSTARSRAVESPDAAAWPWVGRRRMRVVEVTDLFRTMNGLKCTLQEAYAHCFDRMEEGAHNAAADARMTMELFNLWRRAGEPREPLGLPLSFFLVNFHSFKPSRSRQASLGMLRPEGGGAGGLGRGIHGALEKDSGSNTYKLKFRSREGREAYLHCLERKMLAAGLAWEAAPEFVCGKKGARDGYQLSCGSFKMHVLERDR 372
BLAST of mRNA_E_fasciculatus_S2_contig7390.15569.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNX9_9STRA) HSP 1 Score: 164 bits (414), Expect = 3.480e-42 Identity = 123/350 (35.14%), Postives = 169/350 (48.29%), Query Frame = 1
Query: 91 AVDIEMVTI-EGPDDLPARRAMVAAGVVNERLETLLYARVAVPRGCKVTDGVFARMQGGLLATWEEGIPASCVSDFLRRHVEEGGVVVGWELHNDLDVLGFERAASEIRNGKREALPTERAPIDSGSSLSFETWPGNGSSSSSSSTAHSRAVESPDAATVVGRRRMRVVEVTDLFRTMNGLKCTLQEAYAHCF-DRMEE--GAHNAATDARMTMELFNLWRRTGEPPEPLGLPLSFFLVNFHSFKPSRSRQAS----LGMLRPDGGGAGGLGRGIHGALEQDSGSNTYKLKFRFQEGREAYLHCLERKMLSAGL-AWEAAPEFVCGKKGARDGYQLSCGSFKMHVLERDR 1113
A+D EMV + P + R +V+ GVV+ LE LLYAR+AVP + D FAR L W +GIP + R V+ G VVGW+L DL+VLGFE AA+ +R G+R + +D G +S +RVV+++D FR+++ KC L EAY F DR + GAH+AA DAR+ MELF WRR G P + L L F++VN H + + Q LRP+ G RG+ LEQD G N +KLKFR + R AY+ + R+M +A + P G + + SC F H+ E R
Sbjct: 38 ALDCEMVWANKQPAETTLRPVVVSIGVVDTELENLLYARIAVPPDVDIVDDSFARTSANLHPDWTKGIPHTTAQVLFRTMVQRAGTVVGWQLDGDLEVLGFEVAAAALRAGRRLS-------VDFGGGVS-----------------------------------VRVVDLSDHFRSLHNSKCQLSEAYRAVFEDRPAQHWGAHHAAADARLCMELFRRWRRGG-CPRSVPLNLKFYVVNVHGLRRGGAHQERHQTLFEYLRPERG-----NRGV--VLEQDDGRN-FKLKFREENERAAYMCIVRRRMQAAHEDLGPSLPAQESGSEKVTAAVRYSCRLFTAHLYEITR 336
BLAST of mRNA_E_fasciculatus_S2_contig7390.15569.1 vs.
Match: Hypothetical (protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DL02_9EUKA) HSP 1 Score: 137 bits (345), Expect = 1.180e-32 Identity = 97/326 (29.75%), Postives = 154/326 (47.24%), Query Frame = 1
Query: 28 VRKPSQPFSCRRGIGAGMCYYAVDIEMVTIEGPDDLPARRAMVAAGVVNERLETLLYARVAVPRGCKVTDGVFARMQGGLLATWEEGIPASCVSDFLRRHVEEGGVVVGWELHNDLDVLGFERAASEIRNGKREALPTERAPIDSGSSLSFETWPGNGSSSSSSSTAHSRAVESPDAATVVGRRRMRVVEVTDLFRTMNGLKCTLQEAYAHCFDRMEEGAHNAATDARMTMELFNLWRRTGEPPEPLGLPLSFFLVNFHSFKPSR---SRQASLG-MLRPDGGGAGGLGRGIHGALEQDSGSNTYKLKFRFQEGREAYLHCLERKM 993
R+P P S R A YA+D EM+ + D+ ++A+V+ G+V+E +E +LYARV P V + F R GGL+A + +G+ D + R V+EG ++VGW++ +DL LG E++ +P E+ ++++ F T NG +C L EAY F R AHNA DA++TMEL++ W + + + + LSFF +N+H FK S SR +L LRP R + +E+D G N YKLK+R + R+AY+ +++++
Sbjct: 28 ARRPEGPLSPGRRARA----YAIDCEMIEVYLQDNNKLQQAVVSTGIVDESMEVILYARVRKPSSSIVVNDAFVRTSGGLIADYNKGLSIFSTRDVISRLVQEGAIIVGWQIDSDLRALGLEKS-----------IPPEQ-----------------------------------------------IIDLAYKFVTTNGHRCKLAEAYRTVF-RRNFLAHNAGDDAKVTMELYHYWNEA-QKRQTVRVDLSFFCINWHCFKLSNTGMSRGDALWKFLRPR-----STDREV--LIEEDDGKNAYKLKYRQKADRDAYMLLVKKRL 282
BLAST of mRNA_E_fasciculatus_S2_contig7390.15569.1 vs.
Match: C3H1-type (domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C368_DIALT) HSP 1 Score: 119 bits (298), Expect = 8.410e-26 Identity = 95/327 (29.05%), Postives = 140/327 (42.81%), Query Frame = 1
Query: 61 RGIGAGMCYYAVDIEMVTIEGPDDLPARR--AMVAAGVVNERLETLLYARVAVPRGCKVTDGVFARMQGGLLATWEEGIPASCVSDFLRRHVEEGGVVVGWELHNDLDVLGFERAASEIRNGKREALPTERAPIDSGSSLSFETWPGNGSSSSSSSTAHSRAVESPDAATVVGRRRMRVVEVTDLFRTMNGLKCTLQEAYAHCFDRMEEGAHNAATDARMTMELFNLWRRTGEPPEPLGLPLSFFLVNFHSFKPSRSRQASLG--------------MLRPDGGGAGGLGRGIHGALEQDSGSNTYKLKFRFQEGREAYLHCLERKM 993
+ + G +AVD E + + L AR V+ G+V+E LET+LYARV +P C+V D FAR G L W GI +R V++G ++VGW++ DL L E + N RE ++V+++D F+T G KC L EAY F R AH+A DA+MTMEL+N WR P PL L ++ V +HS++P +A LG +LRP+ + AL ++ + LKFR R AY + ++R++
Sbjct: 75 QALNNGQRAFAVDCEFIQVRQGKGLDAREFSVTVSVGIVSEMLETILYARVRMPARCQVWDDAFARTVGALQPDWALGIRVDIACALVREFVDDGHILVGWQIEQDLRGLKLEDI---LTNTPRE----------------------------------------------------QIVDLSDEFKTTQGNKCQLSEAYREIFGRTGS-AHDAIGDAKMTMELYNWWRTHSMQPTPLRL--CWYYVKWHSWRPV---EAGLGAHAGLDEYEAYRWKVLRPERSDRSTCIEELDDALRKE-----FVLKFRTDSERVAYFNLVKRRL 335 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7390.15569.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7390.15569.1 >prot_E_fasciculatus_S2_contig7390.15569.1 ID=prot_E_fasciculatus_S2_contig7390.15569.1|Name=mRNA_E_fasciculatus_S2_contig7390.15569.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=372bp MNQQRRPNAVRKPSQPFSCRRGIGAGMCYYAVDIEMVTIEGPDDLPARRAback to top mRNA from alignment at E_fasciculatus_S2_contig7390:356..3073+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7390.15569.1 ID=mRNA_E_fasciculatus_S2_contig7390.15569.1|Name=mRNA_E_fasciculatus_S2_contig7390.15569.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2718bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7390:356..3073+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7390:356..3073+ >mRNA_E_fasciculatus_S2_contig7390.15569.1 ID=mRNA_E_fasciculatus_S2_contig7390.15569.1|Name=mRNA_E_fasciculatus_S2_contig7390.15569.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1116bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7390:356..3073+ (Ectocarpus fasciculatus EfasUO2)back to top |