mRNA_E_fasciculatus_S2_contig739.15568.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig739.15568.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM72_ECTSI) HSP 1 Score: 340 bits (871), Expect = 2.070e-116 Identity = 170/205 (82.93%), Postives = 179/205 (87.32%), Query Frame = 1
Query: 145 MNQDTMYHRHSEDSFFLFFKSAQIRNEVVGKEPFEVELEAGSFYWGDHLANPIIHKARRARAATAICVGNRKLDCMDIEIKEDRPRPASLNPALPSTSQRNLCFENGVLRAYRVKLAPGECIGSVFDTGGGDGS---VPFGYLAVAMNAAKLSSGGVKPGDSWWCCKASGDVSAGDATATGTDGADGAWSNVGEEEVEVMILQPT 750
MNQDTMYHRHS+DSFFLFF++AQIRNEVVGKEPFEVELEAGSFYWGDHLANPIIHK +CVGNRKLDCMDIEIK DRPRPASL+PALPST QR+LCFENGVLRAYRVKLAPGECIGSVFD GGGDGS VPFGYLAVAM AKLSSGGV PGD+WWC K+SGD+SAGDA T DGAWSNVGEEEVEVMILQPT
Sbjct: 1 MNQDTMYHRHSQDSFFLFFRTAQIRNEVVGKEPFEVELEAGSFYWGDHLANPIIHK---------VCVGNRKLDCMDIEIKADRPRPASLSPALPSTLQRDLCFENGVLRAYRVKLAPGECIGSVFDAGGGDGSMVPVPFGYLAVAMTIAKLSSGGVMPGDNWWCGKSSGDISAGDAGTT----TDGAWSNVGEEEVEVMILQPT 192
BLAST of mRNA_E_fasciculatus_S2_contig739.15568.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK12_9PHAE) HSP 1 Score: 200 bits (509), Expect = 2.410e-62 Identity = 104/129 (80.62%), Postives = 112/129 (86.82%), Query Frame = 1
Query: 370 MDIEIKEDRPRPASLNPALPSTSQRNLCFENGVLRAYRVKLAPGECIGSVFDTGGGDGS---VPFGYLAVAMNAAKLSSGGVKPGDSWWCCKASGDVSAGDATATGTDGADGAWSNVGEEEVEVMILQP 747
MDIEIK DRPRPAS++PALPSTSQR+LCFENGVLRAYRVKLAPGE IGSVFD GGG GS VPFGYLAVAM A+LSSG VKPGD+WWC K+SGD+SAG+A T ADGAWSNVGEEEVEVMILQP
Sbjct: 1 MDIEIKVDRPRPASVSPALPSTSQRDLCFENGVLRAYRVKLAPGEFIGSVFDAGGGKGSMVPVPFGYLAVAMTIAQLSSGEVKPGDNWWCGKSSGDISAGEAGTT----ADGAWSNVGEEEVEVMILQP 125
BLAST of mRNA_E_fasciculatus_S2_contig739.15568.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G5J5_9ALVE) HSP 1 Score: 88.2 bits (217), Expect = 3.660e-17 Identity = 53/159 (33.33%), Postives = 81/159 (50.94%), Query Frame = 1
Query: 58 PEFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSEDSFFLFFKSAQIRNEVVGKEPFEVELEAGSFYWGDHLANPIIHKARRARAATAICVGNRKLDCMDIEIKEDRPRPASLNPALPSTSQRN----LCFENGVLRAYRVKLAPGECIGSVF 522
PE+VEV DEP H T+F+NEY ++V T++HRHS+DS F+F + I N + ++ ++ G + H PIIH+ TA+ G+ + C+DIEI +P P PA P T ++ L +R YRVK G + + +
Sbjct: 15 PEYVEVSDEPSHHTIFKNEYCIAIRVQFEKGHSTLFHRHSQDSLFVFLANISIHNNPTHRPAWDDSIQYGGAVFARHGVKPIIHQI------TAL-TGD--MHCLDIEIL--KPPPEDCKPAGPLTPEQAPGHVLEINKDRMRTYRVKAEKGGHVAATY 162
BLAST of mRNA_E_fasciculatus_S2_contig739.15568.1 vs.
Match: Uncharacterized (protein n=2 Tax=Acidimicrobiia TaxID=84992 RepID=A0A7C7TBA7_9ACTN) HSP 1 Score: 82.4 bits (202), Expect = 1.960e-15 Identity = 52/176 (29.55%), Postives = 81/176 (46.02%), Query Frame = 1
Query: 61 EFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSEDSFFLFFKSAQIRNEVVGKEPFEV-ELEAGSFYWGDHLANPIIHKARRARAATAICVGNRKLDCMDIEIKEDRPRPASLNPALPSTSQRNLCFENGVLRAYRVKLAPGECIGSVFDTGGGDGSVPFGYLAVAMNAA 585
E+VEV DEP H FEN+Y+R+ V P T+YHRH D+F++ + + + G+ ++ AG + HL+ P+IH+ + A +G E+K P AS +P S + E+ LR YR+++ P E G + S F L V + A
Sbjct: 5 EYVEVRDEPRHRHRFENDYIRLYDVLIPEGDQTLYHRHDVDTFYVMIADSSVEDRTFGESTSSTAQITAGGAFLRAHLSEPLIHRVCNIGSGAARMIG--------AELKAAPPMSASFPLNVPCHSVQK---EHDRLRVYRLRIQPEETTGPI--------SYDFYSLTVVLEGA 161
BLAST of mRNA_E_fasciculatus_S2_contig739.15568.1 vs.
Match: Uncharacterized (protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8GIA0_9ACTN) HSP 1 Score: 80.5 bits (197), Expect = 9.610e-15 Identity = 53/179 (29.61%), Postives = 83/179 (46.37%), Query Frame = 1
Query: 61 EFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSEDSFFLFFKSAQIRNEVVGKEPFEV-ELEAGSFYWGDHLANPIIHKARRARAATAICVGNRKLDCMDIEIKEDRPRPASLNPALPSTSQRNLCFENGVLRAYRVKLAPGECIGSVFDTGGGDGSVPFGYLAVAMNAAKLS 594
E+VEV DEP H FEN+Y+R+ V P +T+YHRH D+F++ ++ +++ G E+ AG + HL+ P+IH+ A +G E+K P +S P S + E+ LR YR+ + P + G + S F L V + AA +S
Sbjct: 5 EYVEVRDEPRHRHRFENDYIRLYDVLIPKGDETLYHRHGVDTFYVMIVNSSVQDRTYGAATSSTAEIRAGGAFLRGHLSEPLIHRVCNVGLGDARMIG--------AELKAAPPLSSSSPLRDPCHSIQK---EHDRLRVYRLGIQPDQTTGRI--------SYDFYGLTVVLGAAVIS 164
BLAST of mRNA_E_fasciculatus_S2_contig739.15568.1 vs.
Match: Uncharacterized (protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EDV6_VITBC) HSP 1 Score: 81.3 bits (199), Expect = 1.250e-14 Identity = 70/252 (27.78%), Postives = 102/252 (40.48%), Query Frame = 1
Query: 58 PEFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSEDSFFLFFKSAQIRNEVVGKEPFEVELEAGSFYWGDHLANPIIHKARRARAATAICVGNRKLDCMDIEIKEDRPRPASLNPALPSTSQRNLCFENGVLRAYRVKLAPGECIGSVFDTGGGDGSVPFGYLAVAMNAAK------LSSGGV-----------------KPGDSWWCCKASGDVSAGDATATGTDGADGAWSNVGEEEVEVMILQ 744
P FVEVYDEP H T +N+Y +KV P T YHRH ED+ F+F + +I N + K F + G + P +HKA ++ T N+ + +D E P S +P + + +L + +RAYR+ L P C S PF L V + K ++ G V + GD WW C AS + N G EE+E++I +
Sbjct: 43 PPFVEVYDEPRHTTCVKNDYCIAMKVRFPCGDTTWYHRHKEDTVFVFMGNMEIHNCMCLKSEFNDSFKLGEVRYAALKDRPYVHKATALKSDTP----NKGMFAIDAE-HTGSPPTVSSSPL--ADASHSLVLDQEKVRAYRLML-PAACTVRF--------SYPFYGLWVVVRGGKATITEEIAEGTVGRGQTKEEPPRGESHVYQLGDLWWGCPAS-----------------ITYVNEGTEEMEIVICE 261
BLAST of mRNA_E_fasciculatus_S2_contig739.15568.1 vs.
Match: Uncharacterized (protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E1WNN8_9ACTN) HSP 1 Score: 79.3 bits (194), Expect = 3.050e-14 Identity = 54/182 (29.67%), Postives = 84/182 (46.15%), Query Frame = 1
Query: 61 EFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSEDSFFLFFKSAQIRNEVVGKEPFE-VELEAGSFYWGDHLANPIIHKARRARAATAIC-VGNRKLDCMDIEIKEDRPRPASLNPALPSTSQRNLCFENGVLRAYRVKLAPGECIGSVFDTGGGDGSVPFGYLAVAMNAAKLSSG 600
E+VEV DEP H FEN Y+R+ V P T+YHRH D+F++ + + ++ G+ ++ AG + H + P+IH+ +C VG R + E+K P NPA +L E+ LR +R+ + P + G + S F L V + AA +S G
Sbjct: 14 EYVEVRDEPRHRHRFENXYIRLYDVLIPQEDQTLYHRHGLDTFYVMIADSSVEDQTFGETTTSXAQITAGGAFLRPHESQPLIHR---------VCNVGLRDARMIGAELKT---APPVSNPAPLDAPCHSLRKEHDRLRVHRLVIEPDQTTGPI--------SYGFYSLTVVLRAAVISIG 175
BLAST of mRNA_E_fasciculatus_S2_contig739.15568.1 vs.
Match: Uncharacterized (protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381REV2_9ZZZZ) HSP 1 Score: 79.0 bits (193), Expect = 3.580e-14 Identity = 49/179 (27.37%), Postives = 85/179 (47.49%), Query Frame = 1
Query: 61 EFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSEDSFFLFFKSAQIRNEVVGKEPFEV-ELEAGSFYWGDHLANPIIHKARRARAATAICVGNRKLDCMDIEIKEDRPRPASLNPALPSTSQRNLCFENGVLRAYRVKLAPGECIGSVFDTGGGDGSVPFGYLAVAMNAAKLS 594
E+V+V DEP H FEN+Y+R+ V P T+YHRH+ D+F++ ++ ++++ G+ E+ AG + HL+ P+IH+ A +G E + P + +P + +L E+ LR +R+ + P + G + S F L V + AA +S
Sbjct: 5 EYVDVRDEPRHRHRFENDYIRLYDVLIPEGDQTLYHRHNVDTFYVMIANSSVQDQTFGEATCSAAEITAGGAFLRAHLSAPLIHRVCNVGFGDARMIG-----------AELKAAPPTASPVPLNAPCHSLRKEHERLRLHRLVIQPDQTTGPI--------SYDFYSLTVVLEAAVIS 164
BLAST of mRNA_E_fasciculatus_S2_contig739.15568.1 vs.
Match: hypothetical (protein n=1 Tax=Pseudomonas sp. MMS21 TM103 TaxID=2886506 RepID=UPI001EDF32C1) HSP 1 Score: 79.3 bits (194), Expect = 4.670e-14 Identity = 59/210 (28.10%), Postives = 93/210 (44.29%), Query Frame = 1
Query: 37 KDARVQAPEFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSEDSFFLFFKSAQIRNEVVGKEP-FEVELEAGSFYWGDHLANPIIHKARRARAATAICVGNRKLDCMDIEIKEDRPRPASLNPALPSTSQRNLC---FENGVLRAYRVKLAPGECIGSVFDTGGGDGSVPFGYLAVAMNAAKL----SSGG-----VKPGDSWW 627
+++ + PE+V+V DEP H FEN+Y RV V + ++YHRHS+D+F++ + ++ ++ + E E +L AG HL P+IH+ +G E R RPA A L F+ +R YR+KL PG G + F L V ++ + L ++GG +PGD W
Sbjct: 28 QESDMSKPEWVDVADEPQHFHRFENDYARVYDVRFAAGEKSLYHRHSQDTFYVAVHATKVYDQTLDAEQGAEHDLPAGFSMCRGHLGEPLIHQVSNTGEGPMRMIG-----------AEVRKRPAVTTEAPLQALHHELAPNMFDVDRVRMYRIKLVPGMSTGEI--------RYGFSALTVVLSQSSLKIDEATGGSQVVSYEPGDHVW 218
BLAST of mRNA_E_fasciculatus_S2_contig739.15568.1 vs.
Match: hypothetical (protein n=1 Tax=Bradyrhizobium tropiciagri TaxID=312253 RepID=UPI00067D068C) HSP 1 Score: 73.2 bits (178), Expect = 6.780e-12 Identity = 45/162 (27.78%), Postives = 75/162 (46.30%), Query Frame = 1
Query: 52 QAPEFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSEDSFFLFFKSAQIRNEVVGKEPFEVELEAGSFYWGDHLANPIIHKARRARAATAICVGNRKLDCMDIEIKEDRPRPASLNPALPSTSQRNLCFENGVLRAYRVKLAPGECIGSVFDTGGG 537
+ P V V P H F+++ + ++ V P T YH H +D F+ A+I+N+V+GKEP E+E + G + + P +H+ A+ +L I E S PA + + +N +RA+R+KL+PGE ++ T G
Sbjct: 24 EKPTIVPVTKAPFHLFTFQDDNMSLVSVTLPPGFSTGYHSHDQDLVFVITAGAKIKNQVLGKEPVELEFKTGEVRFASYTKTPGVHQVINIEKDHAM-----RLLAFAIVYPEPGRYSVSTRPA-----KYEVALDNDRVRAWRLKLSPGESAPAIQQTSPG 175 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig739.15568.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig739.15568.1 >prot_E_fasciculatus_S2_contig739.15568.1 ID=prot_E_fasciculatus_S2_contig739.15568.1|Name=mRNA_E_fasciculatus_S2_contig739.15568.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=251bp MATAEAPISAVAKDARVQAPEFVEVYDEPLHPTVFENEYVRVLKVDCPMNback to top mRNA from alignment at E_fasciculatus_S2_contig739:19325..21065- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig739.15568.1 ID=mRNA_E_fasciculatus_S2_contig739.15568.1|Name=mRNA_E_fasciculatus_S2_contig739.15568.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1741bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig739:19325..21065- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig739:19325..21065- >mRNA_E_fasciculatus_S2_contig739.15568.1 ID=mRNA_E_fasciculatus_S2_contig739.15568.1|Name=mRNA_E_fasciculatus_S2_contig739.15568.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=753bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig739:19325..21065- (Ectocarpus fasciculatus EfasUO2)back to top |