mRNA_E_fasciculatus_S2_contig7375.15561.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7375.15561.1
Unique NamemRNA_E_fasciculatus_S2_contig7375.15561.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7375.15561.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR13_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.250e-47
Identity = 86/104 (82.69%), Postives = 96/104 (92.31%), Query Frame = 1 
Query:  103 MSTSWVARSAGSLLGRHSVKVHGEVGFQNVNQAMDEIERRERMLRIPEINERNRYHEKGYDRTRRQKTRKKWRNEFKAATKQLQWMTLLREKGVPIPGQRVGKR 414
            MSTSWVARSAGSLLGRHSVKV G+   Q VNQAMDEIERRERMLR+PE+ ER+RYHEKGY+RTRRQK+ K WRNEFKAATKQL+WMTLL+EKGVPIPGQ+VG+R
Sbjct:    1 MSTSWVARSAGSLLGRHSVKVKGD-SVQKVNQAMDEIERRERMLRVPEVMERHRYHEKGYNRTRRQKSGKIWRNEFKAATKQLKWMTLLKEKGVPIPGQKVGRR 103
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7375.15561.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.250e-4782.69protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7375contigE_fasciculatus_S2_contig7375:1325..4946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1045
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_002400.1
Cds size417
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7375.15561.1prot_E_fasciculatus_S2_contig7375.15561.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7375 1325..4298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842401.2311158-CDS-E_fasciculatus_S2_contig7375:1324..14861696842401.2311158-CDS-E_fasciculatus_S2_contig7375:1324..1486Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7375 1325..1486 +
1696842401.243793-CDS-E_fasciculatus_S2_contig7375:2515..26411696842401.243793-CDS-E_fasciculatus_S2_contig7375:2515..2641Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7375 2516..2641 +
1696842401.2544205-CDS-E_fasciculatus_S2_contig7375:3565..36131696842401.2544205-CDS-E_fasciculatus_S2_contig7375:3565..3613Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7375 3566..3613 +
1696842401.2635393-CDS-E_fasciculatus_S2_contig7375:4217..42981696842401.2635393-CDS-E_fasciculatus_S2_contig7375:4217..4298Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7375 4218..4298 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842401.2725682-UTR-E_fasciculatus_S2_contig7375:4298..45091696842401.2725682-UTR-E_fasciculatus_S2_contig7375:4298..4509Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7375 4299..4509 +
1696842401.281774-UTR-E_fasciculatus_S2_contig7375:4529..49461696842401.281774-UTR-E_fasciculatus_S2_contig7375:4529..4946Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7375 4530..4946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7375.15561.1

>prot_E_fasciculatus_S2_contig7375.15561.1 ID=prot_E_fasciculatus_S2_contig7375.15561.1|Name=mRNA_E_fasciculatus_S2_contig7375.15561.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=139bp
MAHVARSVIHRGAASGGIPLAMSIPAGGANLSRAMSTSWVARSAGSLLGR
HSVKVHGEVGFQNVNQAMDEIERRERMLRIPEINERNRYHEKGYDRTRRQ
KTRKKWRNEFKAATKQLQWMTLLREKGVPIPGQRVGKR*
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mRNA from alignment at E_fasciculatus_S2_contig7375:1325..4946+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7375.15561.1 ID=mRNA_E_fasciculatus_S2_contig7375.15561.1|Name=mRNA_E_fasciculatus_S2_contig7375.15561.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3622bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7375:1325..4946+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGCACGTGGCGCGAAGCGTGATCCATCGGGGCGCTGCCTCCGGCGG
GATACCTCTTGCCATGTCCATTCCTGCAGGCGGGGCGAACCTGAGCAGAG
CGATGTCGACGTCGTGGGTGGCCAGGTCGGCAGGTTCCTTGCTCGGAAGG
CACTCGGTCAAGGTGGGCGTTGCTACAATAGATCATGGCATGGTACATCG
GGCGGTCTGCTGTAGATTACGGAGAGAGACGAGACGATCGATGGCCGTGG
CCTTTGACGGCTTTTCGGCAACAATAGTATGGCCCTGTGTAGCATATTCA
GGACCCTTTGCAATCCAAAGAGACAGCGTCCGGCTTCCGACTGCCGACAC
CTCGTACAGCAGTACTGCTACCACCCCACAGCAGTAAAGGCACACCGGTG
CAGTCTAGGTAGAGCTTGTTACGTTGACGTGCATGCCGGTTGTGGCTTGC
TTGCTGGCTTTGACGCAGGAAAGGAAGGGATTTGCACAACGAGAGTCAAC
TGCTGGTGCAGTGCCTACTACTGCTGTAGATCCCATCAATATCGTACATT
TGCATTGATGTGTATCCCATTCGAATATTGTATCGATGATGCGATTTGAC
ATGCTCACATGCAGTGAGCAACGTCGTCGGGGAACACATGGCATGGCGTG
TATGTACATGGTGTCACCTGCTTCCAGGAGCGGTGGGGTGGTGGCTTTTC
TTGCGCAGAACAAAAGCTCTGTGTTTTACGAAGATAGAGGTGTGCCCAGT
TGCTGTAGGGGTGGGTATGGAGGTGTCACTGGGCATGCACACCTGCGAAC
CCATCTCTCCTGCATGTACACATGTTGGAGAGTCGGCGAACGCGGTCGAG
TGGAGTGCGCAAACGAAGAAAGTTGCACTCGGTAGATGCTACAACAAGCA
GGAGCAGAAAAACTGGCATTGCAGGATAGTTTGTGAAGTTAGGTTACTTG
AGGTTGAGGTCCACGACCGTTTTGTCACACTCAGGGATGCACCCTCATGT
TTCGCCTCTTGCCCAAATACTCGACAGTAGGAGGCAAGGCAGGCATTCTT
GCTCGCGTCCCTTTCAACCCAACGCGCTGGATCATTGTGCCAACATGCAG
CTGATTCCCGTCTGTTCAGGCAGTGGGCGACGGAAGGTCCGGCCCTACCC
ACTTCTGACCATCTTTGCACAATCATCAACAACAACAACAGGTGCACGGG
GAGGTCGGCTTTCAGAACGTGAACCAGGCGATGGACGAGATCGAGCGGAG
AGAACGGATGCTGCGCATTCCCGAGATCAATGAGCGAAACCGGTACCACG
AGAAGGGATACGACAGGGTGAGCGAAACATCTGTCTTTTGCGTCCGGTGA
CTCGTCGGCCTTGGGTGCTGGGAGTGGCGGAACAAGAACAGCACGTTGTA
GGTGTTCCTCGAGATCTTGAAGCGAAACCCGCTTCAAGCCAACCGAAACG
AACGTTGCGGGGGGCGACTACTTACGGGGGTTGGGAATTTCGGTCAAAGA
GTCGGAAGTTTCATGAAAGGGAAAAATCTAGGCACAGATTTAGGGTATCT
ACAGGAGAGGAGGTTGTGTCGGCAGCTTCTACATAAAGGTTACGAATTAT
CGGTGACAAGGGTACTGGCAAGTACGGGACAGCGGTCACCATGAAAATAC
TAGAGACAGCCTGGTTTTTGTTTTGTGCGCGCCACTATTAGTCATTGTCG
GTTGCTGCCTTGTAGTCAGTTGACATTTTTACCGCCAATTCTCCATGGTA
GCAGCAAGACGGGTACACGTTGTTGGGGGGTTTCCGAGTTGGCTGACCCT
AGGCGCTTGTTTTCGTCCGGAGGTGTTCGTACTGCTGTCGATCGTGGGGT
CCAGGTGCTGTATCCCGCAGAATGTGGGGACCTGTGTGGGAACTATGTTT
ATCCAGGACCGAACGATAATGTCATAAACCCTTTGCTCGATGATTTCACA
ACACTGACAAGGAGTGGACACGTGCGCATGCTCTCGGTCACTCTCCATGG
GGGCGGCACACTTGGACCCACACGCAGCGCACCCCCCACACCCACAATCA
ATCCCCAGATCGTATATCCTACCCAAGCAACACAACAGACGCTGATGCCT
GCGTCGAGGTGGGCGGCGTCGAATCCCGACGCAAGCGACAAGATGCACCT
TGTACCAAGCTAACCCCCCCCCCCCCTCCCGTCCTACATCCGCGTTGGTC
CCACCGGCGCCTCTGGGGTTGAAAATTTCGTGATGCTTCAGACAAGACGG
CAGAAGACCAGGAAGAAGTGGAGGAACGAGTTCAAAGCGGTGAGTGCGGA
TCATGCTTTGTCGACAGAGATTCATGCGCACGATTGCGCTTCGCTGGAGA
TTTAAAATGTTTGTCGAGACTCTGTCGGTTTGCTGCAAAGCTCGAGACCC
GAAATGGTTCCTGTTTGTCCCCTCCAAGCCTGAAAACATCGGTGGTACTT
TCACGCTTGCTTTTATGACCATTTTATGGAGGCGTTTAGAGGCCGAAATC
GGCCCAAAACTTGCGAAGAGGTCCGACGTGCCCAGCACTTGCCCAGGTCA
TGAGGTATTTCCTCCACTTAAGCACTCTAGTTTTCGAGAGCTGCTGTTGT
TGATGGCCGTGACGAGAGAATCATGTCCCTTGGCTTGGTGTCGACCGCAT
CTGCGTGCTCAACACGGCCCCGTTGCTTCCAACACAGTAGTGTTTCCATC
GACTGCAGCCTCCCTTTGACCAGTTTTGTGGATATGTATCACATTGACGG
AAGAGGGAACTGCTGTAGATGCATTCTTCAGAGATTCAATGACCTGCGCC
GCTTGTTGGGGCGTATTTCCCCGAATACCTGACGAGCACGGACGGACGCA
CCTCTTCTCTCGCTTGCCTCTTGCTGTGCGTTTTCTCTCTCAGGCGACCA
AGCAATTGCAGTGGATGACCCTCCTCAGGGAGAAAGGCGTCCCCATCCCT
GGGCAGAGAGTAGGAAAGAGGTAGCTTAGATAGAGGTTAGGCCCATTCTT
CGCTTTAAGACAGACAATCAGTTGCTTGCCTGGACGGGGGGTGATGTTCT
CTACTTGGAGAATGGCTAGAAGGAAATATGGATGTGTAGTTGATTTTGCC
GTTGAAAGAGGATGGGAGAAACAAGACACCAAGTTACGCGCCAGCTGATC
GGTGTCTCTGTGGCCAGCACTGGTGACTCAGCAGTGTTGCTGCTGCGATG
GATAGTGTTGCTGCTGCGATGGATAGATAACCCACGCGAGATCGATTCTG
AGCAACTCCAAAGTGAATGGTTCTGAGCAACTTTTCCGGACCATAGATGG
AAGCACCTCATCCGGCAGGTAGTGCGTGCATGGTTGGAGCTTGAGGACTG
AGAGGGGCTCGAAAATGTGTTTGTTGGTGAAGTTGCAGCTAGCCGTGAAC
GAACCTGCTCGTGCTACTAATTGGTTGTCGACTTTTGAAGGACAAAGTGC
ACACACACGACGCCGGGCACAGCTTTGCATTGCGAATCGAATCTCCAAAA
GGAGAGTGTTTTTATCTCAAACCCGCAAGACGCAGATGGTCAAGAGCAAA
ACATACTTGCCTTTGTATTTTTATTTTTGCGGTGTAGTTCTGCGTTTTCC
TCCGGCCGTACTCGGAACTGTT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7375:1325..4946+

>mRNA_E_fasciculatus_S2_contig7375.15561.1 ID=mRNA_E_fasciculatus_S2_contig7375.15561.1|Name=mRNA_E_fasciculatus_S2_contig7375.15561.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=417bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7375:1325..4946+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGCACGTGGCGCGAAGCGTGATCCATCGGGGCGCTGCCTCCGGCGG
GATACCTCTTGCCATGTCCATTCCTGCAGGCGGGGCGAACCTGAGCAGAG
CGATGTCGACGTCGTGGGTGGCCAGGTCGGCAGGTTCCTTGCTCGGAAGG
CACTCGGTCAAGGTGCACGGGGAGGTCGGCTTTCAGAACGTGAACCAGGC
GATGGACGAGATCGAGCGGAGAGAACGGATGCTGCGCATTCCCGAGATCA
ATGAGCGAAACCGGTACCACGAGAAGGGATACGACAGGACAAGACGGCAG
AAGACCAGGAAGAAGTGGAGGAACGAGTTCAAAGCGGCGACCAAGCAATT
GCAGTGGATGACCCTCCTCAGGGAGAAAGGCGTCCCCATCCCTGGGCAGA
GAGTAGGAAAGAGGTAG
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