mRNA_E_fasciculatus_S2_contig7364.15551.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7364.15551.1
Unique NamemRNA_E_fasciculatus_S2_contig7364.15551.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7364.15551.1 vs.
Match: AAA (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K262_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 6.590e-68
Identity = 174/209 (83.25%), Postives = 180/209 (86.12%), Query Frame = -2 
Query:    3 FAKSAASDPFAAASSATRGTGHPFATGAEKSSDAPAAAAGKVMSEADEAGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPATSKFRDSEKDRPAHPVPFWNRTNWISGRKDGTGSRRGAGDDAAAAKQSAAIDATHDSKSPSKAPVSNLCEKRGVQAGSSSCSATDGLQATAAGCSKPVRHEGVARRGTAEDEGAGSGKRKIP 629
            FAK+ ASDPFAAASSATRGTGHPF T A KSS A AA+ GK  SEADE GRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AT+KFRDSE DRPAHPVPFWNRTNWISGRKDGTGSRR AGDDAAA KQSAAID THD+KSPSK+ V+ LCE   VQAGS SCSATDG QATAA  SK VRHEGVARRGT EDE AGSGK KIP
Sbjct:  847 FAKNEASDPFAAASSATRGTGHPFTTKAGKSSGAQAAS-GKSTSEADENGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTKFRDSENDRPAHPVPFWNRTNWISGRKDGTGSRRDAGDDAAAVKQSAAIDFTHDTKSPSKSSVNKLCETPAVQAGSISCSATDGHQATAAERSKRVRHEGVARRGTVEDEEAGSGKGKIP 1054
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7364.15551.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
AAA6.590e-6883.25domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7364contigE_fasciculatus_S2_contig7364:5400..6029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size630
Hectar predicted targeting categoryother localisation
Exons1
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842400.081117-UTR-E_fasciculatus_S2_contig7364:5399..56151696842400.081117-UTR-E_fasciculatus_S2_contig7364:5399..5615Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7364 5400..5615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842400.0914555-CDS-E_fasciculatus_S2_contig7364:5615..60291696842400.0914555-CDS-E_fasciculatus_S2_contig7364:5615..6029Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7364 5616..6029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7364.15551.1prot_E_fasciculatus_S2_contig7364.15551.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7364 5616..6029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7364.15551.1

>prot_E_fasciculatus_S2_contig7364.15551.1 ID=prot_E_fasciculatus_S2_contig7364.15551.1|Name=mRNA_E_fasciculatus_S2_contig7364.15551.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=138bp
MAALCLAAAASSPAPRREPVPSFLPEIQLVRFQNGTGCAGLSFSLSRNLL
VAGGDGGGVLLVFVFFITTDPTAVDAPFLFAAAAAAALPASSASLMTFPA
AAAGASDDFSAPVAKGCPVPRVADEAAANGSDAALFAN
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mRNA from alignment at E_fasciculatus_S2_contig7364:5400..6029+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7364.15551.1 ID=mRNA_E_fasciculatus_S2_contig7364.15551.1|Name=mRNA_E_fasciculatus_S2_contig7364.15551.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=630bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7364:5400..6029+ (Ectocarpus fasciculatus EfasUO2)
ATCGGGATCTTCCTTTTTCCGCTCCCGGCCCCCTCGTCTTCCGCCGTGCC
CCGCCTCGCCACCCCTTCGTGTCGGACAGGCTTGGAACACCCTGCCGCGG
TCGCCTGAAGTCCGTCAGTCGCCGAACAGCTACTGCTGCCGGCTTGTACC
CCCCGTTTCTCGCAAAGGTTGCTAACGGGAGCCTTGGAAGGAGACTTGCT
GTCGTGGGTAGCATCGATGGCAGCGCTTTGCTTAGCAGCAGCAGCGTCGT
CCCCGGCGCCGCGTCGGGAGCCAGTGCCGTCCTTCCTCCCCGAGATCCAG
TTGGTGCGATTCCAGAACGGTACCGGATGCGCGGGCCTATCCTTCTCACT
ATCGCGGAACTTACTAGTGGCCGGCGGTGACGGCGGGGGCGTTTTGTTGG
TCTTCGTCTTCTTCATCACCACCGACCCCACCGCCGTCGACGCCCCCTTT
CTCTTTGCCGCCGCAGCTGCTGCCGCTCTTCCAGCTTCGTCTGCTTCGCT
CATGACCTTCCCTGCGGCAGCTGCTGGTGCATCCGACGATTTTTCTGCGC
CGGTCGCGAAAGGGTGCCCAGTTCCTCGTGTCGCTGACGAAGCTGCGGCG
AACGGATCAGATGCCGCACTCTTCGCAAAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7364:5400..6029+

>mRNA_E_fasciculatus_S2_contig7364.15551.1 ID=mRNA_E_fasciculatus_S2_contig7364.15551.1|Name=mRNA_E_fasciculatus_S2_contig7364.15551.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=414bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7364:5400..6029+ (Ectocarpus fasciculatus EfasUO2)
ATGGCAGCGCTTTGCTTAGCAGCAGCAGCGTCGTCCCCGGCGCCGCGTCG
GGAGCCAGTGCCGTCCTTCCTCCCCGAGATCCAGTTGGTGCGATTCCAGA
ACGGTACCGGATGCGCGGGCCTATCCTTCTCACTATCGCGGAACTTACTA
GTGGCCGGCGGTGACGGCGGGGGCGTTTTGTTGGTCTTCGTCTTCTTCAT
CACCACCGACCCCACCGCCGTCGACGCCCCCTTTCTCTTTGCCGCCGCAG
CTGCTGCCGCTCTTCCAGCTTCGTCTGCTTCGCTCATGACCTTCCCTGCG
GCAGCTGCTGGTGCATCCGACGATTTTTCTGCGCCGGTCGCGAAAGGGTG
CCCAGTTCCTCGTGTCGCTGACGAAGCTGCGGCGAACGGATCAGATGCCG
CACTCTTCGCAAAT
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