mRNA_E_fasciculatus_S2_contig7350.15541.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7350.15541.1
Unique NamemRNA_E_fasciculatus_S2_contig7350.15541.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7350.15541.1 vs.
Match: Protein (tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB42_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 2.300e-64
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    1 EGVVHRDLASRNLLLDDGFHVRISDFGFSRVKRECASRGYTRSDMGPIKWTSPEAMRKRCYSEASDAFSFGVVLYEMFARSPPWEGHENLDVAFRVCSGERMTV 312
            EGVVHRDLASRNLLLDDGFHVRISDFGFSRVKRECASRGYTRSDMGPIKWTSPEAMRKRCYSEASDAFSFGVVLYEMFARSPPWEGHENLDVAFRVCSGERMTV
Sbjct:  773 EGVVHRDLASRNLLLDDGFHVRISDFGFSRVKRECASRGYTRSDMGPIKWTSPEAMRKRCYSEASDAFSFGVVLYEMFARSPPWEGHENLDVAFRVCSGERMTV 876
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BLAST of mRNA_E_fasciculatus_S2_contig7350.15541.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4E3_HETAK)

HSP 1 Score: 158 bits (399), Expect = 6.610e-48
Identity = 72/94 (76.60%), Postives = 83/94 (88.30%), Query Frame = 1 
Query:   25 ASRNLLLDDGFHVRISDFGFSRVKRECASRGYTRSDMGPIKWTSPEAMRKRCYSEASDAFSFGVVLYEMFARSPPWEGHENLDVAFRVCSGERM 306
            A+RNLL+DD   VR+SDFGF+RVK  CASRGYTR++MGPIKWT+PEAMR++ YSE+SD FSFGVVL+EMFAR PPW G ENLDVA RVCSGERM
Sbjct:    1 AARNLLVDDHLRVRVSDFGFARVKDACASRGYTRTEMGPIKWTAPEAMRRKVYSESSDVFSFGVVLFEMFAREPPWRGLENLDVAVRVCSGERM 94
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BLAST of mRNA_E_fasciculatus_S2_contig7350.15541.1 vs.
Match: Non-specific (protein-tyrosine kinase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CZ72_9DINO)

HSP 1 Score: 149 bits (375), Expect = 1.700e-39
Identity = 67/104 (64.42%), Postives = 83/104 (79.81%), Query Frame = 1 
Query:    1 EGVVHRDLASRNLLLDDGFHVRISDFGFSRVKRECASRGYTRSDMGPIKWTSPEAMRKRCYSEASDAFSFGVVLYEMFARSPPWEGHENLDVAFRVCSGERMTV 312
            E V+HRD+A+RN L+D G  VR++DFGFSR++   AS+GYTRS  GPIKW +PEAMRKR YS  SD FSFGV+L+E+F  +PPW+G ENLDV FRVC GER+ V
Sbjct:  888 EDVIHRDIAARNCLVDQGLCVRVADFGFSRLRDRNASKGYTRSTTGPIKWMAPEAMRKRAYSVKSDVFSFGVLLWEIFTGTPPWKGEENLDVLFRVCGGERLDV 991
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BLAST of mRNA_E_fasciculatus_S2_contig7350.15541.1 vs.
Match: Protein (kinase, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G438_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.310e-34
Identity = 58/104 (55.77%), Postives = 78/104 (75.00%), Query Frame = 1 
Query:    1 EGVVHRDLASRNLLLDDGFHVRISDFGFSRVKRECASRGYTRSDMGPIKWTSPEAMRKRCYSEASDAFSFGVVLYEMFARSPPWEGHENLDVAFRVCSGERMTV 312
            EGV+HRD+ASRNLL+D+   V+++DFGF+R+K    S+GYT   +GPIKW +PEAMR R +SE +D FSFGV L+E+     PWEG E++DV +R+C GER  V
Sbjct:  825 EGVIHRDIASRNLLVDENLRVKVADFGFARIKEINRSKGYTSQHVGPIKWMAPEAMRYRRFSEQTDVFSFGVTLFEVLVGKRPWEGIESMDVVYRICDGERQLV 928
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BLAST of mRNA_E_fasciculatus_S2_contig7350.15541.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WL09_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.440e-31
Identity = 55/103 (53.40%), Postives = 78/103 (75.73%), Query Frame = 1 
Query:    1 EGVVHRDLASRNLLLDDGFHVRISDFGFSRVKRECASRGYTRSDMGPIKWTSPEAMRKRCYSEASDAFSFGVVLYEMFARSPPWEGHENLDVAFRVC-SGERM 306
            E V+HRD+A+RN+L+D+  HVR++DFGF+R K    S+ YT+S++ P+KW+SPEA++ + YSEASD FSFGV LYE+  +S PW  H N++V   VC +G RM
Sbjct:  148 EQVIHRDIAARNILVDEHLHVRVADFGFARTKETGRSKCYTQSEILPVKWSSPEAIKWKHYSEASDVFSFGVFLYELVVQSAPWPNHSNMEVVCLVCGTGARM 250
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BLAST of mRNA_E_fasciculatus_S2_contig7350.15541.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5R3_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.120e-26
Identity = 50/100 (50.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    7 VVHRDLASRNLLLDDGFHVRISDFGFSRVKRECASRGYTRSDMGPIKWTSPEAMRKRCYSEASDAFSFGVVLYEMFARSPPWEGHENLDVAFRVCSGERM 306
            VVHRDLA RNLL+  G+HV +SDFGF+R++    S+G++ + +GP++W +PE++  + YSEA+D+FS+GV +YEMF+RS PW    N  VA  V  G R+
Sbjct:  412 VVHRDLACRNLLVCKGYHVYVSDFGFARLRESAQSKGFSGNALGPVRWEAPESLEFKEYSEATDSFSYGVCIYEMFSRSEPWALVTNARVAHLVLGGMRL 511
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BLAST of mRNA_E_fasciculatus_S2_contig7350.15541.1 vs.
Match: Thioredoxin, (putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GMP4_ACACA)

HSP 1 Score: 103 bits (257), Expect = 1.380e-23
Identity = 46/104 (44.23%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    1 EGVVHRDLASRNLLLDDGFHVRISDFGFSRVKRECASRGYTRSDMGPIKWTSPEAMRKRCYSEASDAFSFGVVLYEMFARSPPWEGHENLDVAFRVCSGERMTV 312
            E +VHRD+A+RN+L+   + V +SDFG +R +        T+ + GP+ W +PEA++ R YSEA+DAFSFGV+L+EM AR  PW G E + +   V S  R+ +
Sbjct:  419 EHIVHRDIAARNILVGQNYEVYVSDFGLARAQEADGQVATTKQNFGPLAWMAPEALKSREYSEATDAFSFGVLLWEMMARKRPWAGVEPVQIITSVTSNTRLRI 522
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BLAST of mRNA_E_fasciculatus_S2_contig7350.15541.1 vs.
Match: Putative (LRR receptor-like serine/threonine-protein kinase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N4C2_9EUKA)

HSP 1 Score: 103 bits (256), Expect = 1.980e-23
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 EGVVHRDLASRNLLLDDGFHVRISDFGFSRVKRECASRGYTRSDMGPIKWTSPEAMRKRCYSEASDAFSFGVVLYEMFARSPPWEGHENLDVAFRVCSGERM 306
            E ++HRDLA+RN+LL      ++SDFG SR  +   S   T S +GP+KW SPEA+++R YS  SDAFSFGVV++E+     PWE    +DVA ++ S +R+
Sbjct: 1826 EKIIHRDLAARNILLSKHLEAKVSDFGMSRQVQHKDSASTTASTIGPVKWMSPEAIQQRQYSVKSDAFSFGVVIWEILTGREPWEDIAMVDVAIKIISDQRL 1927
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BLAST of mRNA_E_fasciculatus_S2_contig7350.15541.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DNB6_9EUKA)

HSP 1 Score: 97.1 bits (240), Expect = 3.440e-23
Identity = 47/100 (47.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 EGVVHRDLASRNLLLDDGFHVRISDFGFSRVKRECASRGY--TRSDMGPIKWTSPEAMRKRCYSEASDAFSFGVVLYEMFARSPPWEGHENLDVAFRVCS 294
            E ++HRD+A+RNLL+D    V++SDFG SRV+    S+    T S++GP+ W SPEA+ ++ YSE SDA+SFGV ++E+  R  P+ G  NL VA R  +
Sbjct:   63 ERIIHRDIAARNLLVDSHLRVKVSDFGLSRVRNVHNSKSVETTESNVGPVCWMSPEAIVRQHYSERSDAYSFGVTVWEILTRKRPYLGLTNLQVAIRAAN 162
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BLAST of mRNA_E_fasciculatus_S2_contig7350.15541.1 vs.
Match: MAP (kinase, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HCK5_ACACA)

HSP 1 Score: 102 bits (253), Expect = 4.940e-23
Identity = 46/104 (44.23%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:    1 EGVVHRDLASRNLLLDDGFHVRISDFGFSRVKRECASRGYTRSDMGPIKWTSPEAMRKRCYSEASDAFSFGVVLYEMFARSPPWEGHENLDVAFRVCSGERMTV 312
            E +VHRD+A+RN+L+   + V ++DFG +R +        T+ + GPI W +PEA+R R YSEA+DAFSFGV+L+EM  R  PW G E + V   V +  R+ +
Sbjct:  665 EHIVHRDIAARNILVGQNYEVYVADFGLARAQEAEGQVATTKQNFGPISWMAPEALRSREYSEATDAFSFGVLLWEMVERKRPWAGMEAVQVVTAVTTNTRLKI 768
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7350.15541.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Protein2.300e-64100.00tyrosine kinase n=1 Tax=Ectocarpus siliculosus Tax... [more]
Hypothetical6.610e-4876.60protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Non-specific1.700e-3964.42protein-tyrosine kinase n=1 Tax=Symbiodinium sp. K... [more]
Protein2.310e-3455.77kinase, putative n=1 Tax=Hondaea fermentalgiana Ta... [more]
Hypothetical2.440e-3153.40protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical1.120e-2650.00protein (Fragment) n=1 Tax=Pinguiococcus pyrenoido... [more]
Thioredoxin,1.380e-2344.23putative n=1 Tax=Acanthamoeba castellanii str. Nef... [more]
Putative1.980e-2347.06LRR receptor-like serine/threonine-protein kinase ... [more]
Hypothetical3.440e-2347.00protein (Fragment) n=1 Tax=Lotharella globosa TaxI... [more]
MAP4.940e-2344.23kinase, putative n=1 Tax=Acanthamoeba castellanii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7350contigE_fasciculatus_S2_contig7350:456..989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score219.5
Seed ortholog evalue7.1e-55
Seed eggNOG ortholog2880.D8LB42
Preferred nameRIPK3
Model size312
KEGG koko:K08332,ko:K08841,ko:K08847
KEGG Pathwayko04217,ko04621,ko04623,ko04668,map04217,map04621,map04623,map04668
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0001776,GO:0001817,GO:0001910,GO:0001914,GO:0001932,GO:0001934,GO:0002260,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002685,GO:0002691,GO:0002694,GO:0002697,GO:0002703,GO:0002706,GO:0002709,GO:0002819,GO:0002822,GO:0003674,GO:0003712,GO:0003713,GO:0003824,GO:0004672,GO:0004674,GO:0004704,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0007154,GO:0007165,GO:0007249,GO:0007275,GO:0008150,GO:0008152,GO:0008219,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010921,GO:0010922,GO:0010939,GO:0010940,GO:0010941,GO:0010942,GO:0012501,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0030234,GO:0030334,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031341,GO:0031399,GO:0031401,GO:0032147,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032649,GO:0032879,GO:0032944,GO:0033077,GO:0033674,GO:0035303,GO:0035306,GO:0035556,GO:0036211,GO:0038061,GO:0040012,GO:0042110,GO:0042127,GO:0042129,GO:0042325,GO:0042327,GO:0042592,GO:0042802,GO:0042981,GO:0043029,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043412,GO:0043549,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045321,GO:0045859,GO:0045860,GO:0045935,GO:0045937,GO:0046006,GO:0046649,GO:0046777,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048535,GO:0048536,GO:0048538,GO:0048583,GO:0048584,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048872,GO:0050670,GO:0050776,GO:0050789,GO:0050790,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051249,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051270,GO:0051291,GO:0051336,GO:0051338,GO:0051340,GO:0051341,GO:0051345,GO:0051347,GO:0051351,GO:0051353,GO:0051716,GO:0060255,GO:0060544,GO:0060545,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070228,GO:0070232,GO:0070235,GO:0070265,GO:0070266,GO:0070663,GO:0071704,GO:0071840,GO:0080090,GO:0097190,GO:0097300,GO:0097435,GO:0098772,GO:0140096,GO:0140110,GO:1901564,GO:1902531,GO:1902533,GO:1902680,GO:1903506,GO:1903508,GO:1990000,GO:2000106,GO:2000112,GO:2000145,GO:2000377,GO:2000379,GO:2000401,GO:2000404,GO:2000407,GO:2000449,GO:2000452,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0515@1,COG0666@1,KOG0192@2759,KOG4177@2759
EC2.7.11.1,2.7.12.1
Cds size312
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842399.1838229-CDS-E_fasciculatus_S2_contig7350:455..6311696842399.1838229-CDS-E_fasciculatus_S2_contig7350:455..631Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7350 456..631 +
1696842399.2062294-CDS-E_fasciculatus_S2_contig7350:853..9891696842399.2062294-CDS-E_fasciculatus_S2_contig7350:853..989Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7350 854..989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7350.15541.1prot_E_fasciculatus_S2_contig7350.15541.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7350 456..989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7350.15541.1

>prot_E_fasciculatus_S2_contig7350.15541.1 ID=prot_E_fasciculatus_S2_contig7350.15541.1|Name=mRNA_E_fasciculatus_S2_contig7350.15541.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=104bp
EGVVHRDLASRNLLLDDGFHVRISDFGFSRVKRECASRGYTRSDMGPIKW
TSPEAMRKRCYSEASDAFSFGVVLYEMFARSPPWEGHENLDVAFRVCSGE
RMTV
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mRNA from alignment at E_fasciculatus_S2_contig7350:456..989+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7350.15541.1 ID=mRNA_E_fasciculatus_S2_contig7350.15541.1|Name=mRNA_E_fasciculatus_S2_contig7350.15541.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=534bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7350:456..989+ (Ectocarpus fasciculatus EfasUO2)
GAAGGAGTAGTTCATCGTGATCTTGCTTCTCGCAACCTCCTCCTCGACGA
CGGCTTCCACGTTCGCATCTCGGACTTCGGGTTCTCTCGCGTGAAGCGTG
AGTGCGCGAGCCGGGGGTACACGAGGAGCGACATGGGACCGATAAAGTGG
ACGTCGCCGGAGGCCATGCGAAAGCGGTGAGTTTGAGGTCGTTGCACGTT
GGTTGTCATCATCCAGTGTCAACAAATCGGTCGTGCTTGTTACACGTTTG
TCGTCCTTCGGTGTCAACTACAATATTCAAATGTGCTTGTTGCACGTTGT
CGTCATCCAGTCTCAAGTATGTGTTCCTGGTCGTCACACGATGTCATCTA
GTCTCAACTATTCGTTTGTGCTCGTTACACGCGTTTGTGGTCGTCCAGGT
GCTACAGCGAGGCCTCCGATGCCTTCTCGTTCGGAGTGGTCTTGTACGAG
ATGTTCGCCAGGAGCCCGCCGTGGGAGGGGCACGAAAACCTCGACGTGGC
GTTTAGGGTGTGCTCGGGAGAGAGAATGACGGTA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7350:456..989+

>mRNA_E_fasciculatus_S2_contig7350.15541.1 ID=mRNA_E_fasciculatus_S2_contig7350.15541.1|Name=mRNA_E_fasciculatus_S2_contig7350.15541.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=312bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7350:456..989+ (Ectocarpus fasciculatus EfasUO2)
GAAGGAGTAGTTCATCGTGATCTTGCTTCTCGCAACCTCCTCCTCGACGA
CGGCTTCCACGTTCGCATCTCGGACTTCGGGTTCTCTCGCGTGAAGCGTG
AGTGCGCGAGCCGGGGGTACACGAGGAGCGACATGGGACCGATAAAGTGG
ACGTCGCCGGAGGCCATGCGAAAGCGGTGCTACAGCGAGGCCTCCGATGC
CTTCTCGTTCGGAGTGGTCTTGTACGAGATGTTCGCCAGGAGCCCGCCGT
GGGAGGGGCACGAAAACCTCGACGTGGCGTTTAGGGTGTGCTCGGGAGAG
AGAATGACGGTA
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