mRNA_E_fasciculatus_S2_contig735.15537.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig735.15537.1
Unique NamemRNA_E_fasciculatus_S2_contig735.15537.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig735.15537.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA7_ECTSI)

HSP 1 Score: 797 bits (2059), Expect = 4.200e-273
Identity = 596/790 (75.44%), Postives = 617/790 (78.10%), Query Frame = 1
Query:    1 MVVPAPT--CVGPTGTDGTCRGEVLAQKTAAAAGAGAAASLGAKVPTMGGAGIPAEGSPPHDGGKSGEGLRAAAADGDAHVGGVTTAGADQLDRPIRAGEEGAGGAGIEAAVQPANEEAASAAAAGHGGGANEGAENEHLLPKDGAGDGSLAEEGVRARVSDGALGKGEGVAAAVEGQEAGAXXXXXXXXXXXXXXRKGIIHSTMEAISKVVHRGEGIKPREEDGAAGTATVGEFVDASGG-GGSGASLSSSDPVEGEAQVASSEPPGSATTLGGASVNSGSAQGDIDTAPKSDVGLVDAGGNEQLPATAKPPSSNGGSGVDGIHASDAASGDGAGSSTSGGREENRETDDGGAL---HAHAGATTVPRPPAEQGSSXXXXXXXXXASLADNYPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEASAELRGDNVGGGVEIVQASSSPVVLVEEMDVAVLSAA-CLDTLSFSEFREEVLARTQQAQQSAGGGVAIGGQYESIFKTLMNKIKTLEINQSLFGLYIDDVHGCYQNVIAQMLQEQERARASRSELLNTQAAHLAHIGDQWPAFQELQAKVVEVENRMLLSSLAWFTSLFCLVLMVCSCCLKACRRYAFSDGXXXXXXXXXXXX---SRGRRGCCDSCSPSRGAPSMCPADVAAAPAAKQVLHWRPNGGVGEDGVLSSPGVSSWEQAAAAERRGDERVVSGF 2340
            MVVPAPT  CVGPTG DGTCRGEVLAQKTAA  GAGAAASLGAKVPTMGGAG+PAEGSPP DGG+SGE LRAAAAD  AH GGVTTAGADQLD PI AGE GAGG G EAAVQPANEEAASAAAAGHGG AN+GAENEHLLPKDGAGDGSLAE  V+A +S GA+G+GEGVAAAVEGQEAGA  XXXXXXXXXX  RKGIIHSTMEAISKVV+RGEG+KP+EEDGAAG A VG+  D SGG GGS ASL S+DPVEGEAQVASSEPPGSAT L GA+ NSGSAQGD+DTAPKSD GL  AGG+EQLPA  KPPSSNGG GVDG+HA+                               HAHAG T VPRPPAE  +S         AS AD+YPG              XXXXX                 XX               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                            EE DVAVLSAA CLDTLSFSEFREEVLARTQQAQQSAGGGVAIGGQYESIFKTLMNKIKTLEINQSLFGLYIDDVHGCYQ+VIAQMLQEQERARASRS+LLNTQAAHLAHIGDQWPAFQELQAKVVEVENRMLLSSLAWFTSLFCLVLMVCSCC K CRRYAFSDGXXXXXXXXXXXX   SRGRRGCCDSCSPSRGA SMC ADVAA PAAKQVLHWRPNGGV EDGVLSSPGVSSWEQAAAAER  DERVVSGF
Sbjct:    1 MVVPAPTATCVGPTGADGTCRGEVLAQKTAA--GAGAAASLGAKVPTMGGAGVPAEGSPPQDGGRSGEVLRAAAADEGAHGGGVTTAGADQLDHPIGAGEGGAGGTGTEAAVQPANEEAASAAAAGHGG-ANDGAENEHLLPKDGAGDGSLAEGRVKASLSVGAVGEGEGVAAAVEGQEAGAGAXXXXXXXXXX--RKGIIHSTMEAISKVVNRGEGVKPKEEDGAAGAAAVGDPDDGSGGCGGSSASLWSNDPVEGEAQVASSEPPGSATVLAGAATNSGSAQGDVDTAPKSDAGLAGAGGSEQLPAMGKPPSSNGG-GVDGVHAAXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSDHAHAGGT-VPRPPAEHVNSGATAAPADPASPADDYPGGSSGGGQQEGPAGAXXXXXAALEPANGEPPGTSNGSXXQREGSKTTIPAGGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXEETDVAVLSAAACLDTLSFSEFREEVLARTQQAQQSAGGGVAIGGQYESIFKTLMNKIKTLEINQSLFGLYIDDVHGCYQDVIAQMLQEQERARASRSQLLNTQAAHLAHIGDQWPAFQELQAKVVEVENRMLLSSLAWFTSLFCLVLMVCSCCFKTCRRYAFSDGXXXXXXXXXXXXXXXSRGRRGCCDSCSPSRGAQSMCSADVAATPAAKQVLHWRPNGGVSEDGVLSSPGVSSWEQAAAAERGRDERVVSGF 779          
BLAST of mRNA_E_fasciculatus_S2_contig735.15537.1 vs.
Match: SUN (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG7_9PHAE)

HSP 1 Score: 654 bits (1688), Expect = 1.490e-211
Identity = 568/801 (70.91%), Postives = 589/801 (73.53%), Query Frame = 1
Query:    1 MVVPAP--TCVGPTGTDGTCRGEVLAQKTAAAAGAGAAASLGAKVPTMGGAGIPAEGSPPHDGGKSGEGLRAAAADGDAHVGGVTTAGADQLDRPIRAGEEGAGGAGIEAAVQPANEEAASAAAAGHGGGANEGAENEHLLPKDGAGDGSLAEEGVRARVSDGALGKGEGVAAAVEGQEAGAXXXXXXXXXXXXXXRKGIIHSTMEAISKVVHRGEGIKPREEDGAAGTATVGEFVDASGGGGSGAS--LSSSDPVEGEAQVASSEPPGSATTLGGASVNSGSAQGDIDTAPKSDVGLVDAGGNEQLPATAKPPSSNGGSGVDGIHASDAASGDGAGSSTSGGREENRETDDGGAL---HAHAGATTVPRPPAEQGSSXXXXXXXXXASLADNYPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEASAELRGDNVGGGVEIVQASSSPV---------VLVEEMDVAVLS-AACLDTLSFSEFREEVLARTQQAQQSAGGGVAIGGQYESIFKTLMNKIKTLEINQSLFGLYIDDVHGCYQNVIAQMLQEQERARASRSELLNTQAAHLAHIGDQWPAFQELQAKVVEVENRMLLSSLAWFTSLFCLVLMVCSCCLKACRRYAFSDGXXXXXXXXXXXXSRGRRG----CCDSCSPSRGAPSMCPADVAAAPAAKQVLHWRPNGGVGEDGVLSSPGVSSWEQAAAAERRGDERVVSGF 2340
            MVVPAP  TCVGPTG DGTCRGEVLAQKTA   GAG AASL AKVPTMGGAG+PAEGSPP DGG+SGEGLRAAA             GAD LDRPI AGE G GGAG EAAVQPANEEA SAAAAGHGG AN+GA+NEHLLPKDGA DGSLAE  ++A                                                    VV RGEG+KP+EEDG AG A VGE VDASG         LSSSDPVEGEAQVASSEPPGSA+ + GA  NSGSAQGD+DT PKSD GL  AGG+E LPAT KP SSNGG GV+G+HA                                HAHAG T VPRPPA+Q +S         AS AD+YPG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                  VLVEE DVAVLS AACLDTLSFSEFREEVLARTQQAQQSAGGGVAIGGQYESIFKTLMNKIKTLEINQSLFGLYIDDVHGCYQNVIAQM+QEQERARASRS+LLNTQAAHLAHIGDQWPAFQELQAKV EVENRMLLSSLAWFTSLFCLVL+VCSCCLKACRRYAFSDGXXXXXXXXXXXX          CC SCSPSRGAPSMC ADVAA PAA +VLHWRPNGGV EDGVLSSP VSSWEQAAAAER GD RVVS F
Sbjct:  488 MVVPAPMATCVGPTGADGTCRGEVLAQKTAV--GAGTAASLDAKVPTMGGAGVPAEGSPPQDGGRSGEGLRAAAXXXXXXXXXXXXXGADHLDRPIGAGEGGPGGAGTEAAVQPANEEATSAAAAGHGG-ANDGADNEHLLPKDGASDGSLAEGRLKA---------------------------------------------------SVVSRGEGVKPKEEDGTAGPAAVGEPVDASGXXXXXXXXXLSSSDPVEGEAQVASSEPPGSASVVEGAIANSGSAQGDVDTVPKSDAGLAGAGGSEHLPATGKPLSSNGG-GVNGVHAVSXXXXXXXXXXXXXXXXXXXXXXXXXXXRSDHAHAGGT-VPRPPADQVNSGATAARADPASPADDYPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVEETDVAVLSTAACLDTLSFSEFREEVLARTQQAQQSAGGGVAIGGQYESIFKTLMNKIKTLEINQSLFGLYIDDVHGCYQNVIAQMIQEQERARASRSQLLNTQAAHLAHIGDQWPAFQELQAKVAEVENRMLLSSLAWFTSLFCLVLIVCSCCLKACRRYAFSDGXXXXXXXXXXXXXXXXXXXXXXCCASCSPSRGAPSMCSADVAATPAANKVLHWRPNGGVSEDGVLSSPEVSSWEQAAAAERGGDGRVVSDF 1232          
BLAST of mRNA_E_fasciculatus_S2_contig735.15537.1 vs.
Match: SUN (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBJ9_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.910e-12
Identity = 47/143 (32.87%), Postives = 79/143 (55.24%), Query Frame = 1
Query: 1618 CLDTLSFSEFREEVLARTQQAQQSAGGG-------VAIGGQYESIFKTLMNKIKTLEINQSLFGLYIDDVHGCYQNVIAQMLQEQERARASRSELLNTQAAHLAHIGDQWPAFQELQAKVVEVENRMLLSSLAWFTSLFCLVL 2025
            CL  +  S+F+++ LA+ Q   ++   G       +  G  Y++IFKTLM+++ +LEINQS+F +Y+ ++H C+  V+  +L EQ+RAR    E L T     A +  Q    ++   ++  +E+  L   LAW   + CLVL
Sbjct:  709 CLQQMRLSDFKKQKLAKLQDDPRTKDHGTGSTATSLGSGSPYDNIFKTLMDEMASLEINQSIFDVYVSNLHSCFVQVVDDVLLEQDRARL---EALETIGLLQARLQSQAAVNEQFLRRMQRLESMSLAGGLAWIALIACLVL 848          
BLAST of mRNA_E_fasciculatus_S2_contig735.15537.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C5W7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.630e-6
Identity = 43/123 (34.96%), Postives = 58/123 (47.15%), Query Frame = 1
Query: 1690 AGGGVAIGGQYESIFKTLMNKIKTLEINQSLFGLYIDDVHGCYQNVIAQMLQEQERARASRSELLNTQAAHLAHIGDQWPAFQE----LQAKVVEVENRMLLSSLAWFTSLFCLVLMVCSCCL 2046
            AG  V  G   +  FKTLMNKIKTLEINQ++  LYI  +H CY  V   + +EQ    A   E L    + LA    +  A +E    L+  V  + +  +LS  A    +   +L     CL
Sbjct:    4 AGSSVPAGRDDKDFFKTLMNKIKTLEINQTILDLYISKLHECYGMVTEDLRREQRLYSAQAEERLERFNSELAESKSENKAVRETIEALEMTVQTLSDHAVLSGPALVLCMISFLLTTLHWCL 126          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig735.15537.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized4.200e-27375.44protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
SUN1.490e-21170.91domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
SUN6.910e-1232.87domain-containing protein n=2 Tax=Monodopsidaceae ... [more]
Hypothetical1.630e-634.96protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig735contigE_fasciculatus_S2_contig735:3998..8195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size3591
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_005850.1
Cds size2343
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842398.806367-UTR-E_fasciculatus_S2_contig735:3997..52451696842398.806367-UTR-E_fasciculatus_S2_contig735:3997..5245Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig735 3998..5245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842398.818722-CDS-E_fasciculatus_S2_contig735:5245..56411696842398.818722-CDS-E_fasciculatus_S2_contig735:5245..5641Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig735 5246..5641 -
1696842398.8334944-CDS-E_fasciculatus_S2_contig735:6002..61511696842398.8334944-CDS-E_fasciculatus_S2_contig735:6002..6151Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig735 6003..6151 -
1696842398.8443742-CDS-E_fasciculatus_S2_contig735:6397..81951696842398.8443742-CDS-E_fasciculatus_S2_contig735:6397..8195Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig735 6398..8195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig735.15537.1prot_E_fasciculatus_S2_contig735.15537.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig735 5246..8195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig735.15537.1

>prot_E_fasciculatus_S2_contig735.15537.1 ID=prot_E_fasciculatus_S2_contig735.15537.1|Name=mRNA_E_fasciculatus_S2_contig735.15537.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=781bp
MVVPAPTCVGPTGTDGTCRGEVLAQKTAAAAGAGAAASLGAKVPTMGGAG
IPAEGSPPHDGGKSGEGLRAAAADGDAHVGGVTTAGADQLDRPIRAGEEG
AGGAGIEAAVQPANEEAASAAAAGHGGGANEGAENEHLLPKDGAGDGSLA
EEGVRARVSDGALGKGEGVAAAVEGQEAGAAAAAAGGGEEPPPPRKGIIH
STMEAISKVVHRGEGIKPREEDGAAGTATVGEFVDASGGGGSGASLSSSD
PVEGEAQVASSEPPGSATTLGGASVNSGSAQGDIDTAPKSDVGLVDAGGN
EQLPATAKPPSSNGGSGVDGIHASDAASGDGAGSSTSGGREENRETDDGG
ALHAHAGATTVPRPPAEQGSSGATAPPKDPASLADNYPGGNSGGGQQQAG
TAAAIALDPANEQHSAAAGVASPSLEPPGTSNGSQQQREGSTTTMPAGGA
AAAAEADQPPPPAATAPPRETEVHSLTQQQGGVGGGGDGLPQTAQGHHHH
EASAELRGDNVGGGVEIVQASSSPVVLVEEMDVAVLSAACLDTLSFSEFR
EEVLARTQQAQQSAGGGVAIGGQYESIFKTLMNKIKTLEINQSLFGLYID
DVHGCYQNVIAQMLQEQERARASRSELLNTQAAHLAHIGDQWPAFQELQA
KVVEVENRMLLSSLAWFTSLFCLVLMVCSCCLKACRRYAFSDGGGRSGGG
GGRRRSRGRRGCCDSCSPSRGAPSMCPADVAAAPAAKQVLHWRPNGGVGE
DGVLSSPGVSSWEQAAAAERRGDERVVSGF*
back to top

mRNA from alignment at E_fasciculatus_S2_contig735:3998..8195-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig735.15537.1 ID=mRNA_E_fasciculatus_S2_contig735.15537.1|Name=mRNA_E_fasciculatus_S2_contig735.15537.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4198bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig735:3998..8195- (Ectocarpus fasciculatus EfasUO2)
ATGGTGGTGCCCGCGCCGACGTGCGTAGGGCCGACGGGAACGGACGGGAC CTGCCGGGGGGAAGTCTTGGCACAGAAAACGGCGGCGGCGGCGGGGGCTG GCGCTGCTGCCTCTTTGGGCGCGAAGGTACCCACCATGGGCGGGGCGGGA ATACCCGCAGAAGGATCGCCACCACACGACGGCGGTAAAAGCGGCGAGGG GTTGCGGGCTGCTGCCGCTGACGGGGACGCCCACGTTGGGGGTGTGACAA CCGCAGGCGCTGATCAGCTAGACCGCCCGATACGGGCGGGGGAGGAGGGC GCTGGCGGAGCAGGGATAGAGGCGGCTGTGCAGCCGGCGAACGAGGAGGC GGCTTCTGCCGCCGCTGCCGGGCACGGCGGGGGCGCGAACGAGGGGGCCG AGAACGAGCATCTTTTGCCCAAGGATGGCGCGGGCGACGGTTCGCTTGCC GAGGAGGGAGTCAGGGCAAGGGTGAGCGACGGTGCGTTGGGGAAAGGGGA AGGCGTTGCCGCGGCGGTCGAGGGGCAAGAGGCGGGGGCGGCGGCGGCGG CGGCGGGGGGGGGTGAAGAACCTCCACCACCGCGCAAGGGCATTATTCAC AGCACGATGGAGGCGATATCGAAGGTGGTGCACCGGGGGGAAGGGATCAA GCCTAGGGAAGAAGACGGCGCCGCCGGTACTGCGACGGTGGGGGAGTTCG TTGACGCGAGCGGTGGCGGCGGCAGCGGCGCATCGCTATCGAGCAGCGAC CCCGTTGAAGGGGAAGCGCAGGTCGCTTCTTCTGAACCTCCAGGTTCTGC CACCACCCTTGGAGGGGCATCAGTCAATAGTGGTTCCGCTCAGGGAGACA TCGATACGGCCCCCAAAAGCGATGTTGGACTAGTAGATGCAGGTGGCAAC GAGCAGCTTCCCGCGACGGCGAAGCCACCCTCGAGCAACGGTGGTAGTGG TGTCGACGGGATACACGCGTCTGATGCCGCGTCCGGAGATGGTGCCGGTT CTTCGACGTCTGGCGGTAGAGAAGAGAACCGCGAGACCGACGACGGCGGT GCCCTACATGCACACGCCGGAGCAACCACCGTGCCGAGACCACCGGCCGA GCAGGGTAGCAGCGGAGCGACCGCTCCGCCAAAGGATCCCGCGAGCCTGG CAGATAATTATCCGGGCGGAAACAGCGGTGGTGGACAGCAGCAGGCAGGG ACTGCTGCTGCTATTGCTCTTGATCCAGCGAACGAGCAGCATTCTGCTGC TGCCGGCGTCGCATCGCCATCACTAGAACCTCCCGGCACGTCGAACGGTA GCCAGCAACAGCGCGAAGGTTCGACGACGACGATGCCGGCGGGCGGGGCG GCGGCGGCGGCGGAGGCAGACCAACCCCCACCCCCGGCGGCAACGGCGCC GCCGCGGGAGACGGAGGTCCACTCGTTGACGCAACAACAGGGGGGGGTCG GCGGGGGCGGCGACGGGCTGCCGCAGACGGCCCAGGGGCACCACCACCAC GAAGCATCTGCTGAGCTGCGAGGCGACAATGTCGGCGGCGGCGTCGAGAT TGTGCAGGCGTCTTCTTCGCCGGTGGTGCTCGTCGAGGAGATGGACGTGG CGGTGCTGTCGGCGGCGTGCCTGGACACGCTGAGCTTCAGCGAGTTCCGT GAGGAGGTCCTGGCGCGGACGCAGCAGGCCCAGCAGTCCGCCGGCGGGGG CGTGGCGATCGGCGGGCAGTACGAGAGCATCTTCAAGACGCTCATGAACA AGATCAAGACCCTGGAGATCAACCAGAGCCTCTTCGGCCTGTACATAGGT GGGTCATTCGCGCGTACTGTAGCGTAGGGCCTACGCATAGGTCGAAGCCT CGTCGCTGTTATATTGTGGGTTTATGCGTCGGAGACAGCATTGCAGCCGA TACGACTCCAATGACAGCCCTCCCCCCATCCCTCACTGTAAAGTTTTCTT GAATCGACCCTCTCGACCTCTCACCACTTTTCCTGCCCTGCCCTCCGCCT TTTTGTCCGCTTTCGTCGAAACCCCTCCGAAACAATGCTGGCAGACGACG TGCACGGCTGTTACCAGAACGTCATCGCGCAGATGCTTCAAGAGCAGGAG CGAGCGCGAGCTTCCCGCTCGGAGCTGCTCAACACGCAGGCGGCCCACCT CGCGCATATCGGCGACCAGTGGCCGGCCTTCCAAGAGTTGCAGGTACAAC AGCAATGTATTTTCGCGGCATGTGTGACCGTGTGTTGGTGTTTTTTCGAG ACACGATGGCGTTGTGATAGCTCTCGTGCAACGCACCCGCGCGTACACGC TAAAGCAGCAGCAGCAGCAGCGGCGGTGGTGTTGAGGTATACATGTAGCC ACCAAAGCTGCAGGCGTGCTGCGCAGGAGATGTGCCCTCGACCCCCAGAA TGCCGGCCGTAGTCCATCTCGCCCCAGTTGGTATCGCTCGCCCAAGAGAA AAGCGTCTCTCGTTCGCGTAGTTCGCCGCTCGCCTGCATCCACCGCCGCC TTTTTGCGGTACAACGCCCTCACACGGCCGTTTCTCCTTGGGCGTCGCGA ACAGGCTAAGGTGGTCGAGGTCGAGAACCGGATGCTGCTAAGCTCTCTGG CCTGGTTCACAAGCCTGTTCTGCTTGGTCCTCATGGTGTGCAGCTGCTGC CTCAAGGCTTGCCGCCGGTACGCCTTCAGCGATGGTGGCGGTCGCAGCGG CGGCGGCGGAGGCCGTCGCCGAAGTCGAGGAAGACGGGGGTGCTGCGACA GCTGCAGCCCGAGCCGAGGCGCGCCGTCCATGTGCCCTGCGGACGTCGCT GCCGCCCCGGCCGCGAAGCAGGTGCTGCACTGGCGACCAAACGGCGGCGT GGGCGAGGATGGGGTGCTGTCGAGCCCGGGGGTTTCGAGTTGGGAGCAGG CGGCGGCGGCGGAGCGAAGAGGAGACGAAAGGGTTGTTTCCGGTTTTTGA AGAGAGTCCGTCGTTCCTTCACCCTCCGTGTGTGGTTGCGCTATTTGGTG GTACAGCAGTGTATGCGGGTGAGGCGATTAAGTGTAGACGTGGTCTATGG ATGTATCCGATGGGGTGTGTATTTCACCAGTGTCGTTAGTTTTGAGCGGC GTCCAAGGTCAAGATGAATGAAGCGTTGTGTATGTGCTCCGATGAGGGGA CGAGCGTTACAACAGCAACCTCGCCCTTGCTTTTGGTTTCCTAGGAATCA TGGTTTTCATGATTTTGGCGTGTAGGCGGCCCACTACGGACGGTAGCTGT TTCGGGGCTCTCACGTCTTGGGAGTGACGGTCCGCTTGTTTTAGCGAGCT GGTGTGATTTTTGTTGTCTGTTGGGCGGGAAAAGAGACCACGATATATAA CTACTAGAGCAGGCTTCACCGCATCACGATTTTTCTCCCGTGTCATCACA CACAAACGTCTTGTTTTGCTTACGTTGATATTTGAATGTTGTTTATTTTG TTCCGTGCGTGCCGTGTCCATGTGCGTGATAAAGGTACAGGCCGTGGTGG ATTAGGTGCTGGGTTTTTTTGTGTATTTGTTTTTTCCCCCCTTCGCCAGC CAGCCTCGCGGCATCACCGACGTGCTTCGACGATTTTATGTTTCCCTATT CGCGATGATGATGATGATGATGATGATGATGAAGATGTGGGATATTTTTG ATGAGGGTGCGGTAATTTCGTGTCGTTTAGAGGCGTACGACACGCCACCG GGGCAAGGTTGTTTGGTTACTTGGTAGGCGTCATATTTATTATGACCAGA GTCAGCCACACCATTAGCTACTTGTTGTAGAATCCAAGTCATCAGTAACA CGATGGATGGAGGTCGAGTAAGTAGCTCTGTAGGCGCTGGTGAGGAAAAT TAAAACCGTTGCTTGTGTGGGAAGGTTTTGAAGAGTTCGATGTATGATGG AGAGAGCATGTATTACGTATTGCTGCCGCTGTGAAATGGTACTTGATGTC GACGAGTCTGAGGATAAGGACGACATTCACTATAATAGGGAAGATGAACG GTGTAAGCGTGTCATGTAAACCCACAGCACGCTGTTGCTGCTGCTTGTTG ACGTGTCTGCAGAGCAGTACCGATCATGTTGAGTTGAAGCTCAAGATAAG GACATTTGATTTGAACACTCAAGGTCTCGGCAGGAGACTACGTGAGAAGA AATAACGGAGATCGAACGAGCAACAAGTCACCCACAGCACGGACGGGG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig735:3998..8195-

>mRNA_E_fasciculatus_S2_contig735.15537.1 ID=mRNA_E_fasciculatus_S2_contig735.15537.1|Name=mRNA_E_fasciculatus_S2_contig735.15537.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2343bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig735:3998..8195- (Ectocarpus fasciculatus EfasUO2)
ATGGTGGTGCCCGCGCCGACGTGCGTAGGGCCGACGGGAACGGACGGGAC
CTGCCGGGGGGAAGTCTTGGCACAGAAAACGGCGGCGGCGGCGGGGGCTG
GCGCTGCTGCCTCTTTGGGCGCGAAGGTACCCACCATGGGCGGGGCGGGA
ATACCCGCAGAAGGATCGCCACCACACGACGGCGGTAAAAGCGGCGAGGG
GTTGCGGGCTGCTGCCGCTGACGGGGACGCCCACGTTGGGGGTGTGACAA
CCGCAGGCGCTGATCAGCTAGACCGCCCGATACGGGCGGGGGAGGAGGGC
GCTGGCGGAGCAGGGATAGAGGCGGCTGTGCAGCCGGCGAACGAGGAGGC
GGCTTCTGCCGCCGCTGCCGGGCACGGCGGGGGCGCGAACGAGGGGGCCG
AGAACGAGCATCTTTTGCCCAAGGATGGCGCGGGCGACGGTTCGCTTGCC
GAGGAGGGAGTCAGGGCAAGGGTGAGCGACGGTGCGTTGGGGAAAGGGGA
AGGCGTTGCCGCGGCGGTCGAGGGGCAAGAGGCGGGGGCGGCGGCGGCGG
CGGCGGGGGGGGGTGAAGAACCTCCACCACCGCGCAAGGGCATTATTCAC
AGCACGATGGAGGCGATATCGAAGGTGGTGCACCGGGGGGAAGGGATCAA
GCCTAGGGAAGAAGACGGCGCCGCCGGTACTGCGACGGTGGGGGAGTTCG
TTGACGCGAGCGGTGGCGGCGGCAGCGGCGCATCGCTATCGAGCAGCGAC
CCCGTTGAAGGGGAAGCGCAGGTCGCTTCTTCTGAACCTCCAGGTTCTGC
CACCACCCTTGGAGGGGCATCAGTCAATAGTGGTTCCGCTCAGGGAGACA
TCGATACGGCCCCCAAAAGCGATGTTGGACTAGTAGATGCAGGTGGCAAC
GAGCAGCTTCCCGCGACGGCGAAGCCACCCTCGAGCAACGGTGGTAGTGG
TGTCGACGGGATACACGCGTCTGATGCCGCGTCCGGAGATGGTGCCGGTT
CTTCGACGTCTGGCGGTAGAGAAGAGAACCGCGAGACCGACGACGGCGGT
GCCCTACATGCACACGCCGGAGCAACCACCGTGCCGAGACCACCGGCCGA
GCAGGGTAGCAGCGGAGCGACCGCTCCGCCAAAGGATCCCGCGAGCCTGG
CAGATAATTATCCGGGCGGAAACAGCGGTGGTGGACAGCAGCAGGCAGGG
ACTGCTGCTGCTATTGCTCTTGATCCAGCGAACGAGCAGCATTCTGCTGC
TGCCGGCGTCGCATCGCCATCACTAGAACCTCCCGGCACGTCGAACGGTA
GCCAGCAACAGCGCGAAGGTTCGACGACGACGATGCCGGCGGGCGGGGCG
GCGGCGGCGGCGGAGGCAGACCAACCCCCACCCCCGGCGGCAACGGCGCC
GCCGCGGGAGACGGAGGTCCACTCGTTGACGCAACAACAGGGGGGGGTCG
GCGGGGGCGGCGACGGGCTGCCGCAGACGGCCCAGGGGCACCACCACCAC
GAAGCATCTGCTGAGCTGCGAGGCGACAATGTCGGCGGCGGCGTCGAGAT
TGTGCAGGCGTCTTCTTCGCCGGTGGTGCTCGTCGAGGAGATGGACGTGG
CGGTGCTGTCGGCGGCGTGCCTGGACACGCTGAGCTTCAGCGAGTTCCGT
GAGGAGGTCCTGGCGCGGACGCAGCAGGCCCAGCAGTCCGCCGGCGGGGG
CGTGGCGATCGGCGGGCAGTACGAGAGCATCTTCAAGACGCTCATGAACA
AGATCAAGACCCTGGAGATCAACCAGAGCCTCTTCGGCCTGTACATAGAC
GACGTGCACGGCTGTTACCAGAACGTCATCGCGCAGATGCTTCAAGAGCA
GGAGCGAGCGCGAGCTTCCCGCTCGGAGCTGCTCAACACGCAGGCGGCCC
ACCTCGCGCATATCGGCGACCAGTGGCCGGCCTTCCAAGAGTTGCAGGCT
AAGGTGGTCGAGGTCGAGAACCGGATGCTGCTAAGCTCTCTGGCCTGGTT
CACAAGCCTGTTCTGCTTGGTCCTCATGGTGTGCAGCTGCTGCCTCAAGG
CTTGCCGCCGGTACGCCTTCAGCGATGGTGGCGGTCGCAGCGGCGGCGGC
GGAGGCCGTCGCCGAAGTCGAGGAAGACGGGGGTGCTGCGACAGCTGCAG
CCCGAGCCGAGGCGCGCCGTCCATGTGCCCTGCGGACGTCGCTGCCGCCC
CGGCCGCGAAGCAGGTGCTGCACTGGCGACCAAACGGCGGCGTGGGCGAG
GATGGGGTGCTGTCGAGCCCGGGGGTTTCGAGTTGGGAGCAGGCGGCGGC
GGCGGAGCGAAGAGGAGACGAAAGGGTTGTTTCCGGTTTTTGA
back to top