mRNA_E_fasciculatus_S2_contig7348.15535.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7348.15535.1
Unique NamemRNA_E_fasciculatus_S2_contig7348.15535.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7348.15535.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX9_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 3.420e-94
Identity = 166/194 (85.57%), Postives = 174/194 (89.69%), Query Frame = 2 
Query:   68 NEGMRDYRGGVSSLMSPPRDFELVGCSKNHEGCKPRRGRLNMGFKVPGVFQGHAFCVIAGGRAEASSSRVDEARSGLERLLRLGGGVVLASVPPRAAEGFCDNPFGSEDMPGSDDEVVHVEAGSSGDGGDSAAAAKERTVIVLALPDSSDGREVSPSLAKAATDKRRELGAAAADDRG*ALRSLDRGSVVPFDG 649
            NEG+RD RGGVSSLMSPPRDFELVGCS+NHEGCKPRRGRLN GFKVPGVF G+AFCVIAGG A AS S VD +RSGLERLLRLGGGV+LASV PRAAEGFCDNPFGSEDMP SDDEVVHVEAGS GDGGD+AAAAKER V+VLALPDSSDG  VS SLAK ATDK RELGAAAA DRG ALRSLDRGS +PFDG
Sbjct: 1859 NEGVRDRRGGVSSLMSPPRDFELVGCSENHEGCKPRRGRLNRGFKVPGVFHGYAFCVIAGGGAGASFSTVDGSRSGLERLLRLGGGVILASVAPRAAEGFCDNPFGSEDMPDSDDEVVHVEAGS-GDGGDNAAAAKERMVVVLALPDSSDGHGVSLSLAKIATDKCRELGAAAAVDRGWALRSLDRGSRLPFDG 2051
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BLAST of mRNA_E_fasciculatus_S2_contig7348.15535.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV26_ECTSI)

HSP 1 Score: 290 bits (741), Expect = 3.950e-94
Identity = 153/181 (84.53%), Postives = 162/181 (89.50%), Query Frame = 2 
Query:  107 LMSPPRDFELVGCSKNHEGCKPRRGRLNMGFKVPGVFQGHAFCVIAGGRAEASSSRVDEARSGLERLLRLGGGVVLASVPPRAAEGFCDNPFGSEDMPGSDDEVVHVEAGSSGDGGDSAAAAKERTVIVLALPDSSDGREVSPSLAKAATDKRRELGAAAADDRG*ALRSLDRGSVVPFDG 649
            +MSPPRDFELVGCS+NHEGCKPRRGRLN GFKVPGVF G+AFCVIAG  A ASSSRVD +RSGLERLLRLGGGV+LA VPPRAAEGFCDNPFGSED+ GSDDE VHVEAGS GDGGD+ A AKERTV+VLA+PDSSDGR VS SLAKAATDK RELGAAAA DRG ALRSLD GS VPFDG
Sbjct:    1 MMSPPRDFELVGCSENHEGCKPRRGRLNRGFKVPGVFHGYAFCVIAGKGAGASSSRVDGSRSGLERLLRLGGGVILAPVPPRAAEGFCDNPFGSEDISGSDDEAVHVEAGS-GDGGDNEATAKERTVVVLAMPDSSDGRGVSLSLAKAATDKCRELGAAAAVDRGWALRSLDIGSRVPFDG 180
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7348.15535.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
RING-type3.420e-9485.57domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized3.950e-9484.53protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7348contigE_fasciculatus_S2_contig7348:6112..6761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size650
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003910.1
Cds size528
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842398.7029881-UTR-E_fasciculatus_S2_contig7348:6111..61871696842398.7029881-UTR-E_fasciculatus_S2_contig7348:6111..6187Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7348 6112..6187 +
1696842398.7257218-UTR-E_fasciculatus_S2_contig7348:6715..67611696842398.7257218-UTR-E_fasciculatus_S2_contig7348:6715..6761Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7348 6716..6761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842398.7158341-CDS-E_fasciculatus_S2_contig7348:6187..67151696842398.7158341-CDS-E_fasciculatus_S2_contig7348:6187..6715Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7348 6188..6715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7348.15535.1prot_E_fasciculatus_S2_contig7348.15535.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7348 6188..6715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7348.15535.1

>prot_E_fasciculatus_S2_contig7348.15535.1 ID=prot_E_fasciculatus_S2_contig7348.15535.1|Name=mRNA_E_fasciculatus_S2_contig7348.15535.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=176bp
MRDYRGGVSSLMSPPRDFELVGCSKNHEGCKPRRGRLNMGFKVPGVFQGH
AFCVIAGGRAEASSSRVDEARSGLERLLRLGGGVVLASVPPRAAEGFCDN
PFGSEDMPGSDDEVVHVEAGSSGDGGDSAAAAKERTVIVLALPDSSDGRE
VSPSLAKAATDKRRELGAAAADDRG*
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mRNA from alignment at E_fasciculatus_S2_contig7348:6112..6761+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7348.15535.1 ID=mRNA_E_fasciculatus_S2_contig7348.15535.1|Name=mRNA_E_fasciculatus_S2_contig7348.15535.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=650bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7348:6112..6761+ (Ectocarpus fasciculatus EfasUO2)
AGCCGGCAACTCGAGAAGTGGCGTCAACAGCAGCAGCAACAGCAGCAGCA
GCAGAAAACGCGACAACAACGAGGGCATGCGAGACTATCGCGGCGGTGTG
TCCTCTCTCATGTCCCCACCCCGGGACTTCGAGCTCGTCGGGTGTTCGAA
GAACCACGAGGGCTGCAAGCCCCGTCGAGGGCGGTTGAACATGGGCTTCA
AGGTGCCCGGAGTTTTCCAAGGACATGCCTTTTGCGTTATCGCGGGGGGG
CGCGCGGAAGCATCGTCCTCCAGAGTCGACGAGGCGCGGTCGGGGTTGGA
GCGGCTGCTGAGGCTCGGCGGGGGCGTCGTCCTGGCATCGGTGCCCCCGC
GGGCCGCGGAAGGGTTCTGCGACAACCCCTTCGGCTCGGAGGACATGCCC
GGCTCTGACGATGAGGTAGTGCACGTCGAAGCTGGCAGCAGCGGCGACGG
TGGCGACAGCGCGGCGGCTGCAAAGGAGAGGACGGTGATCGTCTTGGCGT
TGCCGGACTCTTCAGACGGGCGCGAGGTCAGCCCTAGCCTCGCCAAGGCC
GCGACGGACAAGCGCAGAGAGCTCGGGGCCGCCGCCGCGGACGACCGGGG
GTGAGCCTTGCGGTCCCTGGACAGGGGCTCTGTGGTGCCCTTCGACGGCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7348:6112..6761+

>mRNA_E_fasciculatus_S2_contig7348.15535.1 ID=mRNA_E_fasciculatus_S2_contig7348.15535.1|Name=mRNA_E_fasciculatus_S2_contig7348.15535.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=528bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7348:6112..6761+ (Ectocarpus fasciculatus EfasUO2)
ATGCGAGACTATCGCGGCGGTGTGTCCTCTCTCATGTCCCCACCCCGGGA
CTTCGAGCTCGTCGGGTGTTCGAAGAACCACGAGGGCTGCAAGCCCCGTC
GAGGGCGGTTGAACATGGGCTTCAAGGTGCCCGGAGTTTTCCAAGGACAT
GCCTTTTGCGTTATCGCGGGGGGGCGCGCGGAAGCATCGTCCTCCAGAGT
CGACGAGGCGCGGTCGGGGTTGGAGCGGCTGCTGAGGCTCGGCGGGGGCG
TCGTCCTGGCATCGGTGCCCCCGCGGGCCGCGGAAGGGTTCTGCGACAAC
CCCTTCGGCTCGGAGGACATGCCCGGCTCTGACGATGAGGTAGTGCACGT
CGAAGCTGGCAGCAGCGGCGACGGTGGCGACAGCGCGGCGGCTGCAAAGG
AGAGGACGGTGATCGTCTTGGCGTTGCCGGACTCTTCAGACGGGCGCGAG
GTCAGCCCTAGCCTCGCCAAGGCCGCGACGGACAAGCGCAGAGAGCTCGG
GGCCGCCGCCGCGGACGACCGGGGGTGA
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