mRNA_E_fasciculatus_S2_contig7346.15533.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7346.15533.1
Unique NamemRNA_E_fasciculatus_S2_contig7346.15533.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7346.15533.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W6_9PHAE)

HSP 1 Score: 577 bits (1486), Expect = 5.960e-198
Identity = 420/523 (80.31%), Postives = 432/523 (82.60%), Query Frame = 3 
Query:  318 MVRLGAATAGIGLFAMAIDAAQTLWAVCALCFGQGLCGGSIDAIANAAISFVHGADVAPWMQGLHFCFSAGALLAPVAVGHMGYPAAFLVFGLLALPTGVACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDEGPLSMADGQQEEEGGLDCGGGGLPAAILASGVDIEMVQVTDPRSLGVGGTGRDGGPSFSHRHPESEPFERDGSPPAAXXXXXAHTGSXXXXXXXXXXXXXXXXXXXXX---EQEALAVDGRARSLLLSREGLDRQPMSAGEGQPVDRQSAAEDAEQPLRLEEHEAGGK--LPXXXXXXXXXXXXXXXFLYVGIEVGFGAWVAVVVLRDDLAGQAGAALMASVFWGGITLGRLLAIPLAVQFSAGVLLRVNLVGGLLSSTLLWFIGRDGFVWAAMGAAGFGLSMASTYPLAMSLLPEAGYALSEKNSSRFVVGGALGEMLVPACIALLLGRSSSSNNNSIGDGDGEPGRPAALYGACFAVSLLLVAVYGTWCSLLASSAATTASSS 1871
            M RLGAATAGIGL A+AIDAAQTLWAV ALCFGQGLCGGSIDAIANAAISFVHGADVAPWMQGLHFCFSAGALLAPVAVGHMGYPAAFLVFGLLALPTG AC XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                         LPA  LAS   +EMVQ          GTG D  P+FSH HP  +  ER  SPPA XXXXX     XXXXXXXXXXXXXXXXXXXXX   EQEALA  GRARSLLLSRE +DRQ +SA EGQP+D QS+AEDAEQP RLE HE GGK    XXXXXXXXXXXXXXX LYVGIEVGFGAWVAVVVLRDDLAGQAGAALMAS+FWGGITLGRLLAI LAV FSAGVLL VNLV GLLSSTLLW IGRDGFVWAAMGAAGFGLSMASTYPLAMSLLPEAGYALSEKNSS FVVGGALGEMLVPACIALLLG S SS N SIGDGDGEPGR  ALYGACFA+SLL+VAVYGTWCSLLASSAAT A+SS
Sbjct:    1 MARLGAATAGIGLLAIAIDAAQTLWAVSALCFGQGLCGGSIDAIANAAISFVHGADVAPWMQGLHFCFSAGALLAPVAVGHMGYPAAFLVFGLLALPTGAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------LPAVTLASRGTVEMVQ----------GTGWD--PAFSHMHPNDKRIERHDSPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQEALAEHGRARSLLLSREEVDRQSISAAEGQPIDGQSSAEDAEQPFRLEGHEGGGKPXXXXXXXXXXXXXXXXXXXLYVGIEVGFGAWVAVVVLRDDLAGQAGAALMASLFWGGITLGRLLAIQLAVPFSAGVLLTVNLVLGLLSSTLLWVIGRDGFVWAAMGAAGFGLSMASTYPLAMSLLPEAGYALSEKNSSHFVVGGALGEMLVPACIALLLGPSGSSGN-SIGDGDGEPGRSDALYGACFAISLLMVAVYGTWCSLLASSAATAAASS 504
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BLAST of mRNA_E_fasciculatus_S2_contig7346.15533.1 vs.
Match: Major (facilitator superfamily sugar transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS47_ECTSI)

HSP 1 Score: 493 bits (1270), Expect = 2.900e-166
Identity = 383/603 (63.52%), Postives = 391/603 (64.84%), Query Frame = 3 
Query:   69 MIACAKGATTNRTRLLPSLSLFGSFFLLGVFISSLGPAIAPLSHDLGVADVSLGAGVALRGLGYLLGSWLSSVPLPIGALNDRMVRLGAATAGIGLFAMAIDAAQTLWAVCALCFGQGLCGGSIDAIANAAISFVHGADVAPWMQGLHFCFSAGALLAPVAVGHMGYPAAFLVFGLLALPTGVACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDEGPLSMADGQQEEEGGLDCGGGGLPAAILASGVDIEMVQVTDPRSLGVGGTGRDGGPSFSHRHPESEPFERDGSPPAAXXXXXAHTGSXXXXXXXXXXXXXXXXXXXXXEQEALAVDGRARSLLLSREGLDRQPMSAGEGQPVDRQSAAEDAEQPLRLEEHEAGGKLPXXXXXXXXXXXXXXXFLYVGIEVGFGAWVAVVVLRDDLAGQAGAALMASVFWGGITLGRLLAIPLAVQFSAGVLLRVNLVGGLLSSTLLWFIGRDGFVWAAMGAAGFGLSMASTYPLAMSLLPEAGYALSEKNSSRFVVGGALGEMLVPACIALLLGRSSSSNNNSIGDGDGEPGRPAALYGACFAVSLLLVAVYGTWCSLLASSAATTASSSPS 1877
            MI  AK ATTN TRLLPSL+LFGSFFLLGVFIS LGPAIAPLSHDLGVADVSLGAGVALRGLGYLLGSWLSSV LPIGALNDRM RLGAATAGIGLFAMAIDAAQTLWAVCALCFGQGLCGGSIDAIANAAISFVHGA VAPWMQGLHFCFSAGALLAPVAVGH+GYPAAFLVFGLLALPTGVAC XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  E PLSM DG              LP   L S  D+EMVQ                               R       XXXXX     XXXXXXXXXXXXXXXXXXXXX QEALA  GRA SLLLSRE +DRQ +SAG                                                                                                                           RDG VWAAMGAAGFGLSMASTYPLAMSLLPEAGYALSEKNSSRFVVGGALGEMLVPACIALLLG SSSS+N SIGDGD EPGR AALYGACFAVSLLLVAVYG+WCSLLASSAAT A+SS S
Sbjct:    1 MITSAKCATTNGTRLLPSLALFGSFFLLGVFISCLGPAIAPLSHDLGVADVSLGAGVALRGLGYLLGSWLSSVQLPIGALNDRMARLGAATAGIGLFAMAIDAAQTLWAVCALCFGQGLCGGSIDAIANAAISFVHGAGVAPWMQGLHFCFSAGALLAPVAVGHLGYPAAFLVFGLLALPTGVACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EVPLSMPDGXXXXXXXXX-----LPEVTLTSRGDLEMVQAA-----------------------------RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEALAEHGRAPSLLLSREEVDRQHISAG---------------------------------------------------------------------------------------------------------------------------RDGAVWAAMGAAGFGLSMASTYPLAMSLLPEAGYALSEKNSSRFVVGGALGEMLVPACIALLLGPSSSSSN-SIGDGDEEPGRSAALYGACFAVSLLLVAVYGSWCSLLASSAATAAASSSS 444
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BLAST of mRNA_E_fasciculatus_S2_contig7346.15533.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZP9_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.350e-18
Identity = 57/137 (41.61%), Postives = 79/137 (57.66%), Query Frame = 3 
Query: 1281 LYVGIEVGFGAWVAV-VVLRDDLAGQAGAALMASVFWGGITLGRLLAIPLAVQFSAGVLLRVNLVGGLLSSTLLWFIGRDGFVWAAMGAAGFGLSMASTYPLAMSLLPEAGYALSEKNSSRFVVGGALGEMLVPACI 1688
            LYVG E GFG W++  VVL    A  + AAL+ S+FW  +T+GR +A+  A+       LR  L+  L  + + W  G   F+ AA+ AA FG  M+S YPL MS   EAG+ L   ++++ VVGG +GE  VP  I
Sbjct:   97 LYVGGESGFGGWISTFVVLEGTTASASQAALLVSIFWAAVTVGRAVAVGQALLVGPSWSLRFQLLISLCGALVFWVAGAASFIGAAVAAALFGYGMSSVYPLGMSWPGEAGFMLDTVDTAQLVVGGCVGEAAVPLVI 233
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BLAST of mRNA_E_fasciculatus_S2_contig7346.15533.1 vs.
Match: Sodium-dependent (glucose transporter 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSW5_NANGC)

HSP 1 Score: 90.5 bits (223), Expect = 1.230e-15
Identity = 69/184 (37.50%), Postives = 94/184 (51.09%), Query Frame = 3 
Query: 1281 LYVGIEVGFGAWVAVVVLRDDLAGQAG-AALMASVFWGGITLGRLLAIPLAVQFSAGVLLRVNLVGGLLSSTLLWFIGRDGFVWAAMGAAGFGLSMASTYPLAMSLLPEA-GYALSEKNSSRFVVGGALGEMLVPACIALLLGRSSSSNNNSIGDGDGEPGRPAALYGACFAVSLLLVAVYGTW 1826
            +YVGIEVG+G W+A V+LR  L      A+   S+FWG ITLGRLLAIPLA        L + L    L +  L          AA+ +  FGL ++S +P  M LLPEA GY ++  ++S F+VG  LGE ++P  I  L+G            G G      A+  AC A+ +L    +  W
Sbjct:  210 IYVGIEVGYGGWIATVLLRQGLTQSLPVASYSVSMFWGAITLGRLLAIPLATCLPPVPSLLLQLGLSTLGAICLLTFAFQTLWTAAVASVVFGLGLSSIFPT-MMLLPEALGYQVTMWSTSTFLVGACLGEGIIPMGIGWLMGSK----------GFGTGSFAWAMAAACLAMWVLAGCFFSRW 382
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BLAST of mRNA_E_fasciculatus_S2_contig7346.15533.1 vs.
Match: Sodium-dependent (glucose transporter 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVG0_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.910e-15
Identity = 70/184 (38.04%), Postives = 96/184 (52.17%), Query Frame = 3 
Query: 1281 LYVGIEVGFGAWVAVVVLRDDLAGQAG-AALMASVFWGGITLGRLLAIPLAVQFSAGVLLRVNLVGGLLSSTLLWFIGRDGFVWAAMGAAGFGLSMASTYPLAMSLLPEA-GYALSEKNSSRFVVGGALGEMLVPACIALLLGRSSSSNNNSIGDGDGEPGRPAALYGACFAVSLLLVAVYGTW 1826
            +YVGIEVG+G W+A V+LR  L      A+   S+FWG ITLGRLLAIPLA        L + L    L +  L          AA+ +  FGL ++S +P  M LLPEA GY ++  ++S F+VG  LGE ++P  I  L+G      +  IG G        A+  AC A+ +L    +  W
Sbjct:  313 IYVGIEVGYGGWIATVLLRQGLTQSLPVASYSVSMFWGAITLGRLLAIPLATCLPPVPSLLLQLGLSTLGAICLLTFAFQTLWTAAVASVVFGLGLSSIFPTVM-LLPEALGYQVTMWSTSTFLVGACLGEGIIPMGIGWLMG------SKGIGTGS----FAWAMAAACLALWVLAGCFFSRW 485
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BLAST of mRNA_E_fasciculatus_S2_contig7346.15533.1 vs.
Match: MFS (transporter n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C4QAR2_9CHLR)

HSP 1 Score: 90.1 bits (222), Expect = 2.560e-15
Identity = 59/135 (43.70%), Postives = 75/135 (55.56%), Query Frame = 3 
Query: 1278 FLYVGIEVGFGAWVAVVVLRDDLAGQAGAALMASVFWGGITLGRLLAIPLAVQFSAGVLLRVNLVGGLLSSTLLW-FIGRDGFVWAAMGAAGFGLSMASTYPLAMSLLPEAGYALSEKNSSRFVVGGALGEMLVP 1679
            F YVG E+GFGAWV     R  LA  A AA + S FWG +T GRLL+IPLA +     LL   L G L S    W + G    +WAA  A G G SMA+ +P  M+       AL+ + +S F +GG+LG M +P
Sbjct:  290 FFYVGAEMGFGAWVYTYAERMGLADAASAAYLTSAFWGALTAGRLLSIPLAARLRPRTLLAAALSGCLASVGAAWLWPGSPALLWAA--ALGTGFSMATIFPTLMAFASRR-LALTGQITSFFFIGGSLGGMFLP 421
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BLAST of mRNA_E_fasciculatus_S2_contig7346.15533.1 vs.
Match: MFS (transporter n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A847FKV4_9CHLR)

HSP 1 Score: 88.6 bits (218), Expect = 2.620e-15
Identity = 56/140 (40.00%), Postives = 85/140 (60.71%), Query Frame = 3 
Query: 1281 LYVGIEVGFGAWVAVVVLRDDLAGQAGAALMASVFWGGITLGRLLAIPLAVQFSAGVLLRVNLVGGLLS-STLLWFIGRDGFVWAAMGAAGFGLSMASTYPLAMSLLPEAGYALSEKNSSRFVVGGALGEMLVPACIALL 1697
            LYVG EV FG W+    L   L   A AA + S FWGG+T GRLLA+P+A +     ++ V+L+G +LS + LL + G    +W  +G+ G G+SMAS +P A++L  E    ++ + ++ F+VG ++G ML+P  I  L
Sbjct:  198 LYVGAEVAFGGWIYSYALAQGLGSAASAAYLTSAFWGGLTFGRLLALPVAARVRPRWIILVDLLGCILSLAVLLIWSGSVVALW--VGSLGLGISMASVFPAAITLA-ERRVRITGQVTAWFLVGASIGGMLLPWMIGQL 334
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BLAST of mRNA_E_fasciculatus_S2_contig7346.15533.1 vs.
Match: MFS (transporter n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=UPI0019B4D2C1)

HSP 1 Score: 88.2 bits (217), Expect = 6.850e-15
Identity = 57/154 (37.01%), Postives = 78/154 (50.65%), Query Frame = 3 
Query: 1218 GGKLPXXXXXXXXXXXXXXXFLYVGIEVGFGAWVAVVVLRDDLAGQAGAALMASVFWGGITLGRLLAIPLAVQFSAGVLLRVNLVGGLLSSTLLWFIGRDGFVWAAMGAAGFGLSMASTYPLAMSLLPEAGYALSEKNSSRFVVGGALGEMLVP 1679
            GG+ P               FLY+G EVGF  W+   V+   ++   GAA + S FWG +TLGRLLA+PLA +    V+L  +L G +LS  ++   G   F     G  G GLSMAS +P A   L   G  L  + +   +VG + G +LVP
Sbjct:  208 GGREPRRASPALVLLLALFLFLYLGAEVGFSGWIYTYVVTLRMSDAEGAAYLTSAFWGALTLGRLLAVPLAARIGPRVMLATDLAGCMLSIGVIVLSGGS-FTAVCAGTLGLGLSMASIFP-ATFWLAGRGMRLDGRTTGWLLVGASCGAILVP 359
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7346.15533.1 vs.
Match: MFS (transporter (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535HXZ5_9CHLR)

HSP 1 Score: 87.8 bits (216), Expect = 7.700e-15
Identity = 57/140 (40.71%), Postives = 77/140 (55.00%), Query Frame = 3 
Query: 1278 FLYVGIEVGFGAWVAVVVLRDDLAGQAGAALMASVFWGGITLGRLLAIPLAVQFSAGVLLRVNLVGGLLSSTLLWFIGRDGFVWAAMGAAGFGLSMASTYPLAMSLLPEAGYALSEKNSSRFVVGGALGEMLVPACIALL 1697
            FLY G E  FG W+        LA    AA + S FWG +T+GRLL+IPLA +FS  V+L  +L+GG+LS  L+   G        +G A FGLSMAS +P  ++L  E    ++ + +  F VG +LG M  P  I  L
Sbjct:  221 FLYAGAEGAFGGWIFSYATGLRLADGPTAAYLTSTFWGALTVGRLLSIPLAARFSPRVILLADLLGGVLSMLLI-LTGSQSLALTWLGTAAFGLSMASIFPTTLALA-ERRMTITGQVTGWFFVGASLGGMFWPWLIGQL 358
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7346.15533.1 vs.
Match: MFS (transporter n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3JDJ7_9CHLR)

HSP 1 Score: 87.8 bits (216), Expect = 8.770e-15
Identity = 57/141 (40.43%), Postives = 81/141 (57.45%), Query Frame = 3 
Query: 1278 FLYVGIEVGFGAWVAVVVLRDDLAGQAGAALMASVFWGGITLGRLLAIPLAVQFSAGVLLRVNLVGGLLSSTLLWFIGRDGF-VWAAMGAAGFGLSMASTYPLAMSLLPEAGYALSEKNSSRFVVGGALGEMLVPACIALL 1697
            FLYVG EVGFG WV    +   L  +A AA + S FWG +T GRLL++P+A +F    ++ ++L+G L S +L+         +W   GA G GLSMAS +P  +SL  E    ++ + +S F VG +LG M +P  I  L
Sbjct:  223 FLYVGAEVGFGDWVFTYTITRALGSEASAAYLTSAFWGALTAGRLLSVPIANRFPLRNVILLDLLGCLFSLSLILIFPHSVIALWG--GAIGLGLSMASIFPTTISLA-ERYLTITGQLTSWFFVGASLGGMFLPWLIGQL 360
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7346.15533.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized5.960e-19880.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Major2.900e-16663.52facilitator superfamily sugar transporter n=1 Tax=... [more]
Uncharacterized1.350e-1841.61protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more]
Sodium-dependent1.230e-1537.50glucose transporter 1 n=1 Tax=Nannochloropsis gadi... [more]
Sodium-dependent1.910e-1538.04glucose transporter 1 n=2 Tax=Monodopsidaceae TaxI... [more]
MFS2.560e-1543.70transporter n=1 Tax=Chloroflexi bacterium TaxID=20... [more]
MFS2.620e-1540.00transporter n=1 Tax=Anaerolineaceae bacterium TaxI... [more]
MFS6.850e-1537.01transporter n=1 Tax=Rubrivivax sp. TaxID=50259 Rep... [more]
MFS7.700e-1540.71transporter (Fragment) n=1 Tax=Chloroflexi bacteri... [more]
MFS8.770e-1540.43transporter n=1 Tax=Chloroflexi bacterium TaxID=20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7346contigE_fasciculatus_S2_contig7346:2369..7643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score85.1
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog130081.XP_005705780.1
Model size2080
KEGG koko:K08175
KEGG TC2.A.1.7
Hectar predicted targeting categorysignal peptide
Exons8
EggNOG free text desc.glucose transmembrane transporter activity
EggNOG OGs28Z0Q@1,2R5UW@2759
Ec32 ortholog descriptionMajor facilitator superfamily
Ec32 orthologEc-16_004380.1
Cds size1815
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7346.15533.1prot_E_fasciculatus_S2_contig7346.15533.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7346 2437..7446 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842398.4822638-UTR-E_fasciculatus_S2_contig7346:2368..24361696842398.4822638-UTR-E_fasciculatus_S2_contig7346:2368..2436Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7346 2369..2436 +
1696842398.6002147-UTR-E_fasciculatus_S2_contig7346:7446..76431696842398.6002147-UTR-E_fasciculatus_S2_contig7346:7446..7643Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7346 7447..7643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842398.4935837-CDS-E_fasciculatus_S2_contig7346:2436..26571696842398.4935837-CDS-E_fasciculatus_S2_contig7346:2436..2657Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7346 2437..2657 +
1696842398.5034304-CDS-E_fasciculatus_S2_contig7346:3816..39461696842398.5034304-CDS-E_fasciculatus_S2_contig7346:3816..3946Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7346 3817..3946 +
1696842398.5136533-CDS-E_fasciculatus_S2_contig7346:4191..42751696842398.5136533-CDS-E_fasciculatus_S2_contig7346:4191..4275Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7346 4192..4275 +
1696842398.524431-CDS-E_fasciculatus_S2_contig7346:4519..48621696842398.524431-CDS-E_fasciculatus_S2_contig7346:4519..4862Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7346 4520..4862 +
1696842398.5371137-CDS-E_fasciculatus_S2_contig7346:5099..56311696842398.5371137-CDS-E_fasciculatus_S2_contig7346:5099..5631Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7346 5100..5631 +
1696842398.5528686-CDS-E_fasciculatus_S2_contig7346:5816..59521696842398.5528686-CDS-E_fasciculatus_S2_contig7346:5816..5952Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7346 5817..5952 +
1696842398.5707486-CDS-E_fasciculatus_S2_contig7346:6536..66301696842398.5707486-CDS-E_fasciculatus_S2_contig7346:6536..6630Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7346 6537..6630 +
1696842398.5818245-CDS-E_fasciculatus_S2_contig7346:7171..74461696842398.5818245-CDS-E_fasciculatus_S2_contig7346:7171..7446Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7346 7172..7446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7346.15533.1

>prot_E_fasciculatus_S2_contig7346.15533.1 ID=prot_E_fasciculatus_S2_contig7346.15533.1|Name=mRNA_E_fasciculatus_S2_contig7346.15533.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=605bp
MIACAKGATTNRTRLLPSLSLFGSFFLLGVFISSLGPAIAPLSHDLGVAD
VSLGAGVALRGLGYLLGSWLSSVPLPIGALNDRMVRLGAATAGIGLFAMA
IDAAQTLWAVCALCFGQGLCGGSIDAIANAAISFVHGADVAPWMQGLHFC
FSAGALLAPVAVGHMGYPAAFLVFGLLALPTGVACCLTSSAAAAATAAAA
SAVSAAQSVDGGGKHHLLVDEGPLSMADGQQEEEGGLDCGGGGLPAAILA
SGVDIEMVQVTDPRSLGVGGTGRDGGPSFSHRHPESEPFERDGSPPAARR
RSEAHTGSRRGGALATQREEEEEEEEAGGEQEALAVDGRARSLLLSREGL
DRQPMSAGEGQPVDRQSAAEDAEQPLRLEEHEAGGKLPPPPPPPLVGLLV
LFFFLYVGIEVGFGAWVAVVVLRDDLAGQAGAALMASVFWGGITLGRLLA
IPLAVQFSAGVLLRVNLVGGLLSSTLLWFIGRDGFVWAAMGAAGFGLSMA
STYPLAMSLLPEAGYALSEKNSSRFVVGGALGEMLVPACIALLLGRSSSS
NNNSIGDGDGEPGRPAALYGACFAVSLLLVAVYGTWCSLLASSAATTASS
SPSR*
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mRNA from alignment at E_fasciculatus_S2_contig7346:2369..7643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7346.15533.1 ID=mRNA_E_fasciculatus_S2_contig7346.15533.1|Name=mRNA_E_fasciculatus_S2_contig7346.15533.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5275bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7346:2369..7643+ (Ectocarpus fasciculatus EfasUO2)
CCCTGCTCTTCCGTCTGTGGCAAGTCTTCGCACGCCGCCGCATACCAGTG
AGCGGTCCACTCCATGTCATGATCGCTTGCGCGAAAGGTGCAACCACCAA
CCGCACCCGACTGCTTCCCTCCCTAAGCCTGTTCGGGTCTTTCTTCTTGC
TCGGGGTTTTCATCAGCTCCCTTGGGCCCGCAATCGCTCCGCTGAGCCAT
GACCTCGGCGTTGCAGATGTCTCCCTGGGGGCCGGAGTGGCTCTCCGCGG
GCTCGGCTATCTCTTGGGCTCATGGCTTTCGTCTGTTCCGTGAGTGCGAT
CCACTGCTGCTGCTGTTGGTACGGCGGTAGATCGGCTACTGCTGGTGGTA
AACTTCAGTTGAACCTTGCTTCATGGGGAGAGCCTGTACGGACATAGTAC
ATGTAGTAGTGTACACGCCCTTGAGTTTGGTCGTCGCGTGGTTGGACCGT
GCTGCTCATCCTCTAAGGCGCAACGGCGCTGCGTTCGTTTATTATCGAAA
CGTTACTCTGCTGTATCGTACGCGTACAGCAGCAGTAGCTCGCGTACTCG
GTTGCTGTAGCTGAACTCGGGTACTCGGTGGCTCTCTATTTTCCCGCAAG
GCGGGCTCACTACAACGTCAGGCGGGTATTTGGAAGCCGGGGGGAAATCG
AGGTGCGAGATAGACGGTTACTGCGCTCCTCAGGCCACATCGGGTCGTTG
CTATTTGTACGGTAGCGGCTATGGCGATGAATCGTTTATCCTACGGCGTT
GGCGAACCGTTGGTCGGTGAGCCGGGTTTGCTCGGAATCGTCGGGGAATA
CGTGAGGGCGGTCAAGTAATCATTGCTGCACCGTGACTCTAGCAACAATC
CAGTTGTGTATTATGGGGGCATGTTGAGGTTAACAGCGGTGATTTCGTCG
CGTGCACCTGCCAAGCAGATGTTCTACCTCCATGGATGTACTTGAATCGC
ACAGCACACACAGCCTTCCTCAGTCACTTGAAAACTCCTTCGACACGCTC
ATCGGCCGACGACGGGATGTAATGTACTCAACAGGCGCCCGCACCCAAAA
AGCTTGAGTTTTGGGCGAGGCTGGGGTTCTTACATGTATAATAGTTTCCA
ACGGGGGGTTTGCTACAGATGCCTGCTCTCAATGGGGCTCACAAATGGTT
CTCAAGTACTAACTGCTGGACCAAGTAGCTGCACCTTGGAGAGTGTCTTC
AGCTCTCCTGCGCGTCGGTTTGTGAGTGTGTGGGGGGGTGTACTCAGTAT
CATGCATGCCGTAGTCGTTAGACCATAGACCTGGTTTGTGAGTGGGAGAA
GGGTAAATATGCTTAACCGGGGAAAAAGCGTTCGCGAAGGAGTGTGGGTT
TCGCTAAAAAAGCGGAATTTCCCTTGAGATCTCCCTTCTCACGATTGTTG
TGTGTACCTCCACCCTTGCCTACCGCTGCTGCTGCGGTATGCTTGCAGGC
TACCCATCGGGGCGCTGAACGACCGGATGGTTCGCCTCGGCGCCGCCACG
GCCGGCATCGGATTGTTCGCAATGGCAATAGACGCGGCGCAGACGTTGTG
GGCGGTTTGCGCTCTCTGCTTCGGCCAGGTGAGGCAACAGTCGCCTACGC
CAGACACGCAGCAGGAGATAGATGATGTTCGTCACGTGGGCGGGTGGGTC
TTGTCCCCTGGCCGTTCCTGCACCTTACTATCCAGTGGCTGCTTGCTGCT
TCCTGTGGGCGACACAACTTGTGCGCCGATCATGTAGCGCATACGTACAT
ACGCCTAAGGCATATCCTCGGGCTGTTGTCGCCCACGTCTGTTTTCGGTT
TTGCGATAAAAAAAAAAAAACAGGGACTCTGCGGCGGGTCTATCGACGCC
ATCGCCAACGCCGCCATCTCCTTTGTGCATGGAGCCGACGTCGCTCCTTG
GATGCAGGTTAGTAAGCACGCATGCACAGCGTGGAAACCCAAAGTAGTAG
CGCGCTTCCTCGAAAACTGTGACGGGACAGACCCAGAAACCACCCGTCAC
CACCCTAACGCCACCAGCAGCAACACCACGACGTCCTATTTAATCACATC
TAATCGCTGGGCTCGATTCTGTGCGCATACCTCGCCGTATTCCTGACCTA
CCTGGCACACTCGCGACCCATCCCACTCTCATGTTAAACAACAACTCGCA
GGGTTTACACTTCTGCTTCAGCGCCGGAGCGCTTCTTGCCCCCGTGGCCG
TGGGCCACATGGGGTACCCTGCGGCGTTTCTCGTTTTCGGCCTCCTCGCC
CTGCCAACCGGCGTTGCGTGTTGCCTAACCTCGAGCGCCGCGGCCGCCGC
AACCGCCGCCGCTGCCTCCGCCGTTTCTGCGGCTCAAAGCGTGGACGGAG
GGGGCAAGCACCACCTGCTGGTTGACGAGGGGCCGTTGTCCATGGCGGAT
GGCCAGCAGGAGGAAGAGGGTGGTTTGGATTGCGGTGGTGGTGGATTGCC
GGCGGCGATTCTTGCTTCCGGAGTAGACATTGAGATGGTGCAAGGTAAGC
GAGGTTTCGGGGTAATGGTATAGCGCAACAGGTTTGGCGACGGATCGAAA
CGACCGGCTACCAGGTACATGACAGCGGTTGAAATGTTTCTGCGTAGACT
CTCACCGCCCCGTGGGACAGTATCTACGTCCTTTACCATGGTATATCGCA
TCCCTCTGCGTGTGGTCATTTCCACAAATTAACCGCACCATTTTCTCTGT
ACCCTTGGCGGGATGGGATGGAGCGGCGCAGTCACGGACCCACGATCGCT
TGGCGTGGGTGGGACAGGTAGAGACGGGGGCCCTTCCTTTTCTCACCGAC
ACCCGGAATCCGAGCCGTTCGAACGTGACGGTTCACCACCAGCCGCACGA
AGGCGAAGCGAAGCGCATACCGGCAGCCGGCGCGGTGGCGCTCTCGCTAC
ACAGCGAGAGGAAGAGGAGGAGGAGGAGGAGGCCGGCGGGGAGCAAGAGG
CTCTGGCGGTGGACGGGCGTGCTCGCTCGCTGTTGTTGTCACGTGAGGGG
CTCGACCGACAACCCATGTCAGCAGGTGAGGGCCAGCCGGTAGACAGACA
GTCCGCCGCAGAAGACGCGGAGCAGCCGCTCCGCTTGGAAGAGCACGAGG
CTGGGGGTAAGCTGCCGCCGCCGCCGCCGCCACCCCTGGTTGGACTGCTC
GTGCTGTTCTTCTTCCTGTACGTAGGAATCGAGGTCGGCTTTGGCGCTTG
GGTGGCCGTCGTTGTGCTGCGCGACGATCTCGCCGGGCAGGCAGGCGCGG
CTCTCATGGCTAGGTGGGTGGGGGCAACAGTGTGTCGACATTGCTGTCAG
CCCACTCTGGAAGTTTTTTCTCCAGGCTCTGTAAACTGGATGCATAGCCC
AGAGGAACCTCGCTGACCATACATGCTGCCCCCGTCTCTACCTCCGCCTC
CCCGTCTCCTCGCCGACCACGTTGGATGAACGAACAACTTGGAAGCAGCG
TCTTCTGGGGGGGGATCACGCTAGGGAGGCTTCTCGCCATACCACTCGCC
GTTCAGTTTTCGGCCGGTGTTCTCTTGAGGGTGAACCTGGTGGGTGGGTT
GCTCTCATCAACATTGCTGTGGTTCATCGGAAGGGTGAGCGAGGGGGGAG
CGTGTGGGGCGTACTCTCGTGTTTTGCATGCCTTAGCGGTTAGACCGTTG
ACCACGCGTCCTCGAGAGGACGGAGCATTGTCCCCACAGGACCGATCACC
GATGGCCAATTGTCTCTTCCTACTTTGCCTAAAAGGAGGTTCAAGAATGT
TTTCCCTGTAGCCTACCTATCCTATCGATGGCACAGCCCGCCTCTGCAAC
CCACTTTGCCCCAGTACAGCTACCGTTTTCTCCTGGCTATTGCATACCTC
AAACATTTCCTTCTTACTACCTTCCTTCTACTTGTTTCCTTGCTACATGA
ATCCATTCTTCGCGCGGGACCATTGGGCATTACACCCGTAGGTTTCTGAA
AAAAGCAGCAGCAGCAGCAGCAGATCGAGCCCTTGCAGCCGGGCGCGGGA
ACTCGCATCGTGTGTGCCTCGCGGTTGTCTCGTTTGGTCGGGGGGATTTG
ATGTCCCCCCTCCTCTTTCCTCGATGTGTTTGCCTTCCGTCTTCCCGTCG
ACTGCCGGACGGACGGACGGACGGACGGACGGACAAAAACGTCTGTCTAC
ACCCTTGACTTACGGCAGGATGGGTTTGTGTGGGCGGCGATGGGGGCCGC
AGGTTTTGGGCTGTCCATGGCCTCCACGTACCCTTTGGCCATGTCCCTGC
TACCTGAAGCTGGTGAGTTGTGTTTCGTTGTGCGCGAGTTTTCGGGGTCC
TCTGTTTGGTTCGGATACAACCTCCTGATCGTCGAACCCTGCAAGGTTTT
ATTCTCGAAAATATGAAACTGGATTAAGGTTCAGGCCGGCCGAAAACTCC
CCCGTCCCTGGTGAGTGTTGCTACCGGATGCTGTGGGTGTGGAATCACAA
AGGGGGTTGCTATGCATATCCCCCGTTTCAGAACGTTGCCGATGAAGAGC
TTCAGAACGTCGCCGCAGTGAACAGAAGTAGCCCATTTTGTTCCTAGATG
CAAACGACGCCAATACCCTCTTTTGTTCTTCCGAGGAGAGAGTCGGGTCG
ATTTATCACACAAACACCGAGGATACCGTTCTCGTCACGGATCTCCCCTC
TGTGGCACCACGCGCATATCTATGCATATGAATGCGGAAAGCGGCTAGTC
TGTGAATCGCTTGGAGATCGCCCTTCCCTTGCCGTTTCGTTTTCGTCGTC
GGCTTGCCCCCCCCCCCCCACCACCACCATACGTTGTTGATGCCCACTCC
TAGGGTACGCCCTTTCGGAAAAAAACTCATCCCGCTTCGTGGTCGGGGGT
GCTCTCGGAGAGATGCTGGTTCCCGCGTGCATCGCGTTGCTCCTGGGCCG
CAGCAGTTCCAGCAACAACAACAGCATCGGCGATGGCGACGGGGAGCCCG
GGCGGCCCGCCGCGCTGTACGGCGCCTGCTTTGCGGTCTCGTTGCTCCTG
GTGGCGGTGTACGGCACTTGGTGCAGCCTTCTCGCTTCTTCGGCCGCAAC
GACGGCATCATCATCGCCGTCGCGCTAGGATAGATGCTGCAGACGAGTGC
GCGGTGGGGAGAGAGGCGAGAAGACGACTAGTTTTTTTATGTGTCAATAT
GGAACCCTCTACTCTGGGTGAGCGGAGTGTCCGGAGAGTGGTGGCTGTGA
CCTGCCACCGGAGGCTGGCTATTCTCTTTGGTGCGATGTGGCGAGGAATG
CCAAGCGTGACCGAGCGAACTCAGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7346:2369..7643+

>mRNA_E_fasciculatus_S2_contig7346.15533.1 ID=mRNA_E_fasciculatus_S2_contig7346.15533.1|Name=mRNA_E_fasciculatus_S2_contig7346.15533.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1815bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7346:2369..7643+ (Ectocarpus fasciculatus EfasUO2)
ATGATCGCTTGCGCGAAAGGTGCAACCACCAACCGCACCCGACTGCTTCC
CTCCCTAAGCCTGTTCGGGTCTTTCTTCTTGCTCGGGGTTTTCATCAGCT
CCCTTGGGCCCGCAATCGCTCCGCTGAGCCATGACCTCGGCGTTGCAGAT
GTCTCCCTGGGGGCCGGAGTGGCTCTCCGCGGGCTCGGCTATCTCTTGGG
CTCATGGCTTTCGTCTGTTCCGCTACCCATCGGGGCGCTGAACGACCGGA
TGGTTCGCCTCGGCGCCGCCACGGCCGGCATCGGATTGTTCGCAATGGCA
ATAGACGCGGCGCAGACGTTGTGGGCGGTTTGCGCTCTCTGCTTCGGCCA
GGGACTCTGCGGCGGGTCTATCGACGCCATCGCCAACGCCGCCATCTCCT
TTGTGCATGGAGCCGACGTCGCTCCTTGGATGCAGGGTTTACACTTCTGC
TTCAGCGCCGGAGCGCTTCTTGCCCCCGTGGCCGTGGGCCACATGGGGTA
CCCTGCGGCGTTTCTCGTTTTCGGCCTCCTCGCCCTGCCAACCGGCGTTG
CGTGTTGCCTAACCTCGAGCGCCGCGGCCGCCGCAACCGCCGCCGCTGCC
TCCGCCGTTTCTGCGGCTCAAAGCGTGGACGGAGGGGGCAAGCACCACCT
GCTGGTTGACGAGGGGCCGTTGTCCATGGCGGATGGCCAGCAGGAGGAAG
AGGGTGGTTTGGATTGCGGTGGTGGTGGATTGCCGGCGGCGATTCTTGCT
TCCGGAGTAGACATTGAGATGGTGCAAGTCACGGACCCACGATCGCTTGG
CGTGGGTGGGACAGGTAGAGACGGGGGCCCTTCCTTTTCTCACCGACACC
CGGAATCCGAGCCGTTCGAACGTGACGGTTCACCACCAGCCGCACGAAGG
CGAAGCGAAGCGCATACCGGCAGCCGGCGCGGTGGCGCTCTCGCTACACA
GCGAGAGGAAGAGGAGGAGGAGGAGGAGGCCGGCGGGGAGCAAGAGGCTC
TGGCGGTGGACGGGCGTGCTCGCTCGCTGTTGTTGTCACGTGAGGGGCTC
GACCGACAACCCATGTCAGCAGGTGAGGGCCAGCCGGTAGACAGACAGTC
CGCCGCAGAAGACGCGGAGCAGCCGCTCCGCTTGGAAGAGCACGAGGCTG
GGGGTAAGCTGCCGCCGCCGCCGCCGCCACCCCTGGTTGGACTGCTCGTG
CTGTTCTTCTTCCTGTACGTAGGAATCGAGGTCGGCTTTGGCGCTTGGGT
GGCCGTCGTTGTGCTGCGCGACGATCTCGCCGGGCAGGCAGGCGCGGCTC
TCATGGCTAGCGTCTTCTGGGGGGGGATCACGCTAGGGAGGCTTCTCGCC
ATACCACTCGCCGTTCAGTTTTCGGCCGGTGTTCTCTTGAGGGTGAACCT
GGTGGGTGGGTTGCTCTCATCAACATTGCTGTGGTTCATCGGAAGGGATG
GGTTTGTGTGGGCGGCGATGGGGGCCGCAGGTTTTGGGCTGTCCATGGCC
TCCACGTACCCTTTGGCCATGTCCCTGCTACCTGAAGCTGGGTACGCCCT
TTCGGAAAAAAACTCATCCCGCTTCGTGGTCGGGGGTGCTCTCGGAGAGA
TGCTGGTTCCCGCGTGCATCGCGTTGCTCCTGGGCCGCAGCAGTTCCAGC
AACAACAACAGCATCGGCGATGGCGACGGGGAGCCCGGGCGGCCCGCCGC
GCTGTACGGCGCCTGCTTTGCGGTCTCGTTGCTCCTGGTGGCGGTGTACG
GCACTTGGTGCAGCCTTCTCGCTTCTTCGGCCGCAACGACGGCATCATCA
TCGCCGTCGCGCTAG
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