mRNA_E_fasciculatus_S2_contig7344.15532.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7344.15532.1
Unique NamemRNA_E_fasciculatus_S2_contig7344.15532.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7344.15532.1 vs.
Match: Uncharacterized (protein n=4 Tax=Eukaryota TaxID=2759 RepID=D7FPA4_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 6.980e-8
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 3 
Query:  366 RKTATAVAYCKRGRGLIKVNGCPIELL 446
            +KTATAVAYCKRGRGLIKVNGCPIELL
Sbjct:   16 KKTATAVAYCKRGRGLIKVNGCPIELL 42
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BLAST of mRNA_E_fasciculatus_S2_contig7344.15532.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX35_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.910e-7
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 3 
Query:  366 RKTATAVAYCKRGRGLIKVNGCPIELL 446
            +KTATAVAYCKRGRGLIKVNGCPIEL+
Sbjct:   16 KKTATAVAYCKRGRGLIKVNGCPIELV 42
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BLAST of mRNA_E_fasciculatus_S2_contig7344.15532.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YH48_AURAN)

HSP 1 Score: 56.6 bits (135), Expect = 2.530e-7
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 3 
Query:  366 RKTATAVAYCKRGRGLIKVNGCPIELL 446
            +KTATAVAYCK+GRGLIKVNGCPIELL
Sbjct:   13 KKTATAVAYCKQGRGLIKVNGCPIELL 39
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BLAST of mRNA_E_fasciculatus_S2_contig7344.15532.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EPS2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.340e-6
Identity = 32/63 (50.79%), Postives = 37/63 (58.73%), Query Frame = 3 
Query:  258 VHPEAYRGPRSS*GFAQLTSHRERERQGRRPLSSPGRKTATAVAYCKRGRGLIKVNGCPIELL 446
            +H  A+R   SS G  Q       +  GR+       K ATAVAYCK GRGLIKVNGCPIEL+
Sbjct:    4 LHSPAHRNKMSSEGKIQSV-----QTFGRK-------KNATAVAYCKNGRGLIKVNGCPIELV 54
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BLAST of mRNA_E_fasciculatus_S2_contig7344.15532.1 vs.
Match: Hypothetical (protein n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S3ZMH9_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.350e-6
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 3 
Query:  366 RKTATAVAYCKRGRGLIKVNGCPIELL 446
            +K ATAVAYCK+GRGLIKVNGCPIELL
Sbjct:   13 KKAATAVAYCKQGRGLIKVNGCPIELL 39
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BLAST of mRNA_E_fasciculatus_S2_contig7344.15532.1 vs.
Match: 40S (ribosomal protein S16 n=1 Tax=Morus notabilis TaxID=981085 RepID=W9RTR1_9ROSA)

HSP 1 Score: 53.1 bits (126), Expect = 1.540e-6
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = 3 
Query:  366 RKTATAVAYCKRGRGLIKVNGCPIELL 446
            +KTA AV YCKRGRGLIK+NGCPIEL+
Sbjct:   15 KKTAVAVTYCKRGRGLIKINGCPIELV 41
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7344.15532.1 vs.
Match: Uncharacterized (protein n=1 Tax=Prunus armeniaca TaxID=36596 RepID=A0A6J5VS98_PRUAR)

HSP 1 Score: 53.1 bits (126), Expect = 2.170e-6
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = 3 
Query:  366 RKTATAVAYCKRGRGLIKVNGCPIELL 446
            +KTA AV YCKRGRGLIK+NGCPIEL+
Sbjct:   15 KKTAVAVTYCKRGRGLIKINGCPIELV 41
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7344.15532.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HK13_FAGSY)

HSP 1 Score: 53.5 bits (127), Expect = 2.380e-6
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = 3 
Query:  366 RKTATAVAYCKRGRGLIKVNGCPIELL 446
            +KTA AV YCKRGRGLIK+NGCPIEL+
Sbjct:   15 KKTAVAVTYCKRGRGLIKINGCPIELI 41
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7344.15532.1 vs.
Match: Putative (Ribosomal protein S5 domain 2-like superfamily protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7C3A1_DAVIN)

HSP 1 Score: 53.1 bits (126), Expect = 3.530e-6
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = 3 
Query:  366 RKTATAVAYCKRGRGLIKVNGCPIELL 446
            +KTA AV YCKRGRGLIK+NGCPIEL+
Sbjct:   14 KKTAVAVTYCKRGRGLIKINGCPIELV 40
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7344.15532.1 vs.
Match: Uncharacterized (protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834G7F4_RHOSS)

HSP 1 Score: 53.5 bits (127), Expect = 3.880e-6
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = 3 
Query:  366 RKTATAVAYCKRGRGLIKVNGCPIELL 446
            +KTA AV YCKRGRGLIK+NGCPIEL+
Sbjct:   17 KKTAVAVTYCKRGRGLIKINGCPIELI 43
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7344.15532.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized6.980e-896.30protein n=4 Tax=Eukaryota TaxID=2759 RepID=D7FPA4_... [more]
Hypothetical1.910e-792.59protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Uncharacterized2.530e-792.59protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Uncharacterized1.340e-650.79protein n=1 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
Hypothetical1.350e-688.89protein n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A... [more]
40S1.540e-681.48ribosomal protein S16 n=1 Tax=Morus notabilis TaxI... [more]
Uncharacterized2.170e-681.48protein n=1 Tax=Prunus armeniaca TaxID=36596 RepID... [more]
Uncharacterized2.380e-681.48protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=... [more]
Putative3.530e-681.48Ribosomal protein S5 domain 2-like superfamily pro... [more]
Uncharacterized3.880e-681.48protein n=1 Tax=Rhododendron simsii TaxID=118357 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7344contigE_fasciculatus_S2_contig7344:4421..7119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size449
Hectar predicted targeting categoryother localisation
Exons2
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842398.4132185-CDS-E_fasciculatus_S2_contig7344:4420..47321696842398.4132185-CDS-E_fasciculatus_S2_contig7344:4420..4732Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7344 4421..4732 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842398.4299247-UTR-E_fasciculatus_S2_contig7344:4732..47881696842398.4299247-UTR-E_fasciculatus_S2_contig7344:4732..4788Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7344 4733..4788 +
1696842398.4453535-UTR-E_fasciculatus_S2_contig7344:7040..71191696842398.4453535-UTR-E_fasciculatus_S2_contig7344:7040..7119Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7344 7041..7119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7344.15532.1prot_E_fasciculatus_S2_contig7344.15532.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7344 4421..4732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7344.15532.1

>prot_E_fasciculatus_S2_contig7344.15532.1 ID=prot_E_fasciculatus_S2_contig7344.15532.1|Name=mRNA_E_fasciculatus_S2_contig7344.15532.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=104bp
GLLWGTLPRSNANPFVALCGCSCAPPRPSPWCLSLSLSLREKEEAPKFFA
YKTRASAANPLIARRARRPPLACERGEMLKLAQRDVYTPRHTEAHEVREA
LRS*
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mRNA from alignment at E_fasciculatus_S2_contig7344:4421..7119+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7344.15532.1 ID=mRNA_E_fasciculatus_S2_contig7344.15532.1|Name=mRNA_E_fasciculatus_S2_contig7344.15532.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2699bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7344:4421..7119+ (Ectocarpus fasciculatus EfasUO2)
GGGTTGCTGTGGGGCACGCTGCCGAGGAGCAACGCAAATCCATTCGTGGC
TCTGTGTGGCTGCTCTTGTGCCCCCCCCCGACCTTCTCCATGGTGCCTCT
CTCTCTCTCTCTCTCTGAGAGAGAAAGAAGAGGCTCCAAAGTTTTTTGCG
TACAAAACAAGGGCGTCGGCTGCCAATCCTTTGATTGCGCGCCGCGCTCG
GCGGCCCCCTCTCGCTTGCGAGAGGGGTGAGATGCTCAAGCTCGCCCAGA
GGGATGTGTACACCCCGAGGCATACCGAGGCCCACGAAGTTCGTGAGGCT
TTGCGCAGCTGACTTCTCACAGAGAGAGAGAGAGGCAGGGCCGCCGCCCG
CTCTCTTCTCCTGGACGGGTAAGGGTGCGATGGTTTGCGACGTGAATGTG
TGCTGTGTGGACGCCCAAGTGTCCGTGCTGGTTTGGGTATATAAGATGCT
CGTGTACTCCGATAACACCGCTGTACAGACTAGACCACACCTGTGGGGAC
TTGGACTAATCGTCCCTACTTGTACAGCGAGCCGGGTCACATCTGGTTTA
TATGGCGTTGGATGGGTATGCCTGAGCTGTAGTGGCTGAACCCAGGGGTC
TGCTCCGACCATTTAGGGTGCCGACAAATAGTAGTAGACTGCTGTTGTGA
AATCCTTTTGCAAACTGCCCCTTTTTCCTCGCACACGACACCACCAGATC
CTGGGTCCCCTTGTCCGCATCCAAAGTGTTCCTACCGTATACAGCAGCAG
CGCTAGCTAAGTAGAAGCTACGCGTTGTTTTCCCACGCGTTTCCTCCTCG
TGAGCCATGATGACACTACAACAAACGCTAACTACGTTTTTGGTCGGAAC
TAATGATGTCGACTATCTCTGTGGTTCTGAGTGCTCTTCTTCTGGGGGTG
GCGTGACTCGATTTTTTTTCTCTTGTCACTTCAAAAACCAACTTTACAAA
TGACCACTTGTACAACGAGGCAGTGTGCCGGTTACTCCAACCCGTGGTCA
CAAGGCAGTCGATAGGTAAATACTTTGTTTTAACGTTTCTCCGGCCGCAT
GCGGTGCCATACCAGCGCACGAATTCCAGGAGAGAGGAACACACACGCGT
GTGCGTACAGTAGAGATGGTGCATGCGGCGTGTTTCTGAGTTAAAGCAGG
GTCCTGTTTCCCAAATGTCTCCCAAGTGTACGTTTGTCTGGTGTGAAATG
CTGTAAAACTGTGGTTTGGATCGACAGGTTGGGTGGGACCAGTCATTGGG
GGCCTGCTGAGGTCAGGGGGCAAGACACCTCAGGAGTGTTGGGAGTGTAT
GAGACTCTGTTGGCGTCCAGAGACGCAACCCGGATTGTGTCCCGTCTTTG
GATGAACCACCGCTGTTTGTGGTGTGGTGGTGATGGTGGTGGTTTGTTTC
ACAGCAGTTGGAAATGGGTGATGTTTTTGATTCCACCACATACTTACCAC
ATGTACGGACAGCCTGTTGTTGAGCCGACGACCGACATACCTACGGTTTC
CCAGTAGAACTGACAAGGGCCACTGTCGTGCTTCCTCCTCTTGATGGCCC
TCCTCCGACCTAGTAACTAGGTCGGGGGAGGGCCGTGAAGAGGAGGAAGC
ACGACGCGTTTCCATTGTCATCTCTTCCGGCAGGCCGTAAGTATGTCGAT
CGTACCAAGGACAGCGCGGTGGATGCCTTGACCGCTTCAATAGAGCGAAC
CCTACGGTGTAGTGCACCGATGCGTACCTCATTCAACCATGGCGGTGCCC
CGGATTCAGCTGTATAAGTCAGATCGGTTATTCGGCCGTTTACCGCGCCT
TACATGCATGGCAGTGACACATTTCAATGGCTTCTGGGGGAGGTATATAC
GGAGTTGCAAGTGGTGGGTGGGGTGCAAGAGCCATGATGACCTCTTTTAA
CGCTAACTACGTTGTGACTGAACCAACGATGTCGACTATCTCTGTGGTTC
TGAGAGCTCTTGACCACCCCCCACACTTGGCTACTGCTGTATCTACGTAC
GTCTTCATATCCCCCTTGGGGAGGTATATACGGAGTTGCAAGTGGTGGGT
GGGGTGCAAGAGCCATGATGACCTCTTTTAACGCTAACTACGTTGTGACT
GAACCAACGATGTCGACCATCTCTGTGGTTCTGAGAGCTCTTGACCACCC
CCCACACTTGGCTACTGCTGTATCTACGTACGTCTTCATATCTCCCATGG
CACCGCTTCCCGCGGCTTCTGTGTCGCCTTGAAAATGAACGCATTTGTGT
CGTGGTTTGGTGTTTACCTTGCTCTGTCGTTCAAAAGTGCTCAACATCAT
TCTGTCGTGTTTTGCGCCTTCTTGACGTCAGGAGCCACGCACAAGGTACA
CCCCTTCCGAGCTCAATTTTTCCATTGCTTGAACTTGTTTTTTCTTAAAT
AAAGACAACAAATGACTGTCTTCCACAAATTGGGTAACAGTCAGTTTTGT
GTGTCTTTGCTGTTGTAGACCGTCCTTGGCAAACATGAACTCTGTGCTAC
ACCAAATGTACAGCAACGGGGTGCTCTTCGCGCCCTTCCCTCTCTGGTTA
CGCTTACGCCACGGCCATCATCGCTCCCTGCGACACTCCCCACTCGTCGT
CCATCCTGTCTGTCGAGCAGAAGACCGCCACCGCCGTCGCGTACTGCAAG
CGCGGACGCGGCCTGATCAAGGTGAACGGATGCCCCATCGAGCTCCTCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7344:4421..7119+

>mRNA_E_fasciculatus_S2_contig7344.15532.1 ID=mRNA_E_fasciculatus_S2_contig7344.15532.1|Name=mRNA_E_fasciculatus_S2_contig7344.15532.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=312bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7344:4421..7119+ (Ectocarpus fasciculatus EfasUO2)
GGGTTGCTGTGGGGCACGCTGCCGAGGAGCAACGCAAATCCATTCGTGGC
TCTGTGTGGCTGCTCTTGTGCCCCCCCCCGACCTTCTCCATGGTGCCTCT
CTCTCTCTCTCTCTCTGAGAGAGAAAGAAGAGGCTCCAAAGTTTTTTGCG
TACAAAACAAGGGCGTCGGCTGCCAATCCTTTGATTGCGCGCCGCGCTCG
GCGGCCCCCTCTCGCTTGCGAGAGGGGTGAGATGCTCAAGCTCGCCCAGA
GGGATGTGTACACCCCGAGGCATACCGAGGCCCACGAAGTTCGTGAGGCT
TTGCGCAGCTGA
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