mRNA_E_fasciculatus_S2_contig734.15528.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig734.15528.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW0_ECTSI) HSP 1 Score: 503 bits (1294), Expect = 2.890e-171 Identity = 401/505 (79.41%), Postives = 409/505 (80.99%), Query Frame = 1
Query: 40 GGQQHWGGPLGRIVGQLRRPEGEVDSNGGGAAAATAPLKPEGCAGGRGGPTARGGVFGPGRGIXXXXXXXXXXXXXXXXXYADRNGRRHSTGDTANGDGGSAKKRGRGGWKKDYAVIASVESKAGEAAA-AAAAGSVENADARYVGYEELPADMRPQVRDVLAFKTLSLNEETWTPELSPYRTAEVTAFDASSGLVRLLPASLEDDNDKXXXXXXXXXXXXXXXXXXXXXXXXXXSSSGIAETNIEEGSVPTSNGRNEGGVSGDLKGMEDGAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GKVGGEEKEDRALREGEEELEYSSLANVRVVRGPSTGELEKRKQALQKWNSLGPGGGILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPKKAGRGGRXXXXXXXXXXXXGXSARKQXXXXXXXXPKSVGKKQGAARGTLAVAGLLGKYAGKLPAGGEGGAAGEATAPSSAV 1548
GGQQHWGGPLGRIVGQLRRPEGE +SNGGGAAAA APL+PEG AGGRG TARGGVFGPGRGI YA++N RRHSTGDTANGDGGSAKKRGRGGWKKDY VIASVESKAGEAAA AAAAGSVEN DARYV YEELP DMRPQV DVLAFKTLSLNEETWTPELSPYRTAEVTAFD SSGLVRLLPAS+EDDN K XXXXXXX SSSGI E+N EEG VPTSNG N+GGVSG+ KGMED AAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GKVGG E EDR LREGEEELEYSSLANVRVVRGPS GELEKRKQAL KWNSLGPGGGILG XXXXXXXXXXXXXXXXXXXXXXXX ATPKKAGRGGRXXXXXXXXXX G SARKQ PKSVGKKQGAARGTLAVAGLLGK AGKLP GG GGAAGEATAPSSAV
Sbjct: 33 GGQQHWGGPLGRIVGQLRRPEGESESNGGGAAAAIAPLEPEGRAGGRGDSTARGGVFGPGRGIGRGGMGMTRGGGAAGGGYANKNTRRHSTGDTANGDGGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENGDARYVVYEELPTDMRPQVCDVLAFKTLSLNEETWTPELSPYRTAEVTAFDTSSGLVRLLPASIEDDN-KDGXXXXXXXLVNGCTKGHTAGQQQQGSSSGITESNTEEGRVPTSNGHNQGGVSGNSKGMEDPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKARSTSSGKVGGAE-EDRELREGEEELEYSSLANVRVVRGPSMGELEKRKQALHKWNSLGPGGGILGGXXXXXXXXXXXXXXXXXXXXXXXXPASLPS------ATPKKAGRGGRXXXXXXXXXXACG-SARKQGGKGKGASPKSVGKKQGAARGTLAVAGLLGKCAGKLPTGGGGGAAGEATAPSSAV 528
BLAST of mRNA_E_fasciculatus_S2_contig734.15528.1 vs.
Match: Coilin (n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE) HSP 1 Score: 463 bits (1192), Expect = 4.680e-150 Identity = 381/505 (75.45%), Postives = 387/505 (76.63%), Query Frame = 1
Query: 40 GGQQHWGGPLGRIVGQLRRPEGEVDSNGGGAAAATAPLKPEGCAGGRGGPTARGGVFGPGRGIXXXXXXXXXXXXXXXXXYADRNGRRHSTGDTANGDGGSAKKRGRGGWKKDYAVIASVESKAGEAAA-AAAAGSVENADARYVGYEELPADMRPQVRDVLAFKTLSLNEETWTPELSPYRTAEVTAFDASSGLVRLLPASLEDDNDKXXXXXXXXXXXXXXXXXXXXXXXXXXSSSGIAETNIEEGSVPTSNGRNEGGVSGDLKGMEDGAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GKVGGEEKEDRALREGEEELEYSSLANVRVVRGPSTGELEKRKQALQKWNSLGPGGGILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPKKAGRGGRXXXXXXXXXXXXGXSARKQXXXXXXXXPKSVGKKQGAARGTLAVAGLLGKYAGKLPAGGEGGAAGEATAPSSAV 1548
GGQQHWGGPLGRIVGQLRRPEGE +SNGGGAAAATAPL+PEG AG GGVFGPG XXX YADRN RRHSTG TANGDGGSAKKRGRGGWKKDY VIASVESKAGEAAA AAAAGSVENADARYVGYEELP DMRPQVRDVLAFKTLSLNEETWTPELSPYR AEV AFDASSGLVRL PAS EDDN K SSS IAE+N EEGSVPTSNG NEGG GD KGME AAVA XXXXXXXXXXXXXXXXXXXXXXXXXXX G+VGG E EDR LREGEEELEYSSLANVRVVRGPS GEL+KRKQALQKWNSLGPGGGILG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KKAGRGG+XXXXXXXXXXXXG SARKQ XX PKSVGKKQGAARGTLAVAGLLGK AGKLP GG GAA E TAPSSAV
Sbjct: 494 GGQQHWGGPLGRIVGQLRRPEGESESNGGGAAAATAPLEPEGRAGXXXXXXXVGGVFGPGXXXXXXGMGMTRGGGFAGGRYADRNTRRHSTGHTANGDGGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENADARYVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYRMAEVIAFDASSGLVRLRPASTEDDN-KDGGGAGSGAFVNDCTKGHTVGQQQQGSSSIIAESNTEEGSVPTSNGHNEGGFGGDSKGMEYPAAVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVSAEPTTDGRNKARSTSSGEVGGAE-EDRELREGEEELEYSSLANVRVVRGPSMGELKKRKQALQKWNSLGPGGGILGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------KKAGRGGKXXXXXXXXXXXXG-SARKQGGKGXXASPKSVGKKQGAARGTLAVAGLLGKCAGKLPTGGGRGAAEEGTAPSSAV 988
BLAST of mRNA_E_fasciculatus_S2_contig734.15528.1 vs.
Match: Coilin (n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WRN2_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 2.140e-5 Identity = 47/124 (37.90%), Postives = 67/124 (54.03%), Query Frame = 1
Query: 304 HSTGDTANGDGGSAKKRGRGG--WKKDYAVIASVESKAGEAAAAAAAGSVENADARYVGYE-ELPADMRPQVRDVLAFKTLSLNEETWTPELSPYRTAEVTAFDASSGLVRL----LPASLEDD 654
H GD A+ +G + K++G+ WK+ Y V+ASV K E + AA S + Y P+ R QV+DVLAFKTL+L ETW P LS ++ +V D+S + + L AS ED+
Sbjct: 228 HGNGDMASSNGITPKRKGKWEERWKRPYVVVASVLDKKPEDSDGAA--STADLTTMLAAYPTSSPSPSRFQVKDVLAFKTLTLCLETWQPVLSEWQCGQVQTVDSSGSTIDVSNWTLAASNEDN 349
BLAST of mRNA_E_fasciculatus_S2_contig734.15528.1 vs.
Match: Coilin (n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WP95_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 3.350e-5 Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 1
Query: 304 HSTGDTANGDGGSAKKRGRGG--WKKDYAVIASV-ESKAGEAAAAAAAGSVENADARYVGYEELPADMRPQVRDVLAFKTLSLNEETWTPELSPYRTAEVTAFDASSGLV 624
H GD A+ +G + K++G+ WK+ Y V+A+V + K ++ AA+A + A Y P+ R QV+DVLAFKTL+L ETW P LS ++ +V D+S +
Sbjct: 189 HGNGDMASSNGIAPKRKGKWEERWKRPYVVVATVLDKKLEDSDGAASAADLTTMLAAYP--TSSPSSSRFQVKDVLAFKTLTLCLETWQPVLSDWQCGQVQTVDSSGSTI 296 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig734.15528.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig734.15528.1 >prot_E_fasciculatus_S2_contig734.15528.1 ID=prot_E_fasciculatus_S2_contig734.15528.1|Name=mRNA_E_fasciculatus_S2_contig734.15528.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=517bp GGRGRGGGGGGLGGGQQHWGGPLGRIVGQLRRPEGEVDSNGGGAAAATAPback to top mRNA from alignment at E_fasciculatus_S2_contig734:13184..15855- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig734.15528.1 ID=mRNA_E_fasciculatus_S2_contig734.15528.1|Name=mRNA_E_fasciculatus_S2_contig734.15528.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2672bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig734:13184..15855- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig734:13184..15855- >mRNA_E_fasciculatus_S2_contig734.15528.1 ID=mRNA_E_fasciculatus_S2_contig734.15528.1|Name=mRNA_E_fasciculatus_S2_contig734.15528.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1551bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig734:13184..15855- (Ectocarpus fasciculatus EfasUO2)back to top |