mRNA_E_fasciculatus_S2_contig7334.15524.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7334.15524.1
Unique NamemRNA_E_fasciculatus_S2_contig7334.15524.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7334.15524.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7334contigE_fasciculatus_S2_contig7334:1705..2562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size806
Hectar predicted targeting categoryother localisation
Exons2
Cds size417
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842397.4571776-UTR-E_fasciculatus_S2_contig7334:1704..18511696842397.4571776-UTR-E_fasciculatus_S2_contig7334:1704..1851Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7334 1705..1851 +
1696842397.493768-UTR-E_fasciculatus_S2_contig7334:2320..25621696842397.493768-UTR-E_fasciculatus_S2_contig7334:2320..2562Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7334 2321..2562 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842397.4692004-CDS-E_fasciculatus_S2_contig7334:1851..22121696842397.4692004-CDS-E_fasciculatus_S2_contig7334:1851..2212Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7334 1852..2212 +
1696842397.4848416-CDS-E_fasciculatus_S2_contig7334:2264..23201696842397.4848416-CDS-E_fasciculatus_S2_contig7334:2264..2320Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7334 2265..2320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7334.15524.1prot_E_fasciculatus_S2_contig7334.15524.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7334 1852..2320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7334.15524.1

>prot_E_fasciculatus_S2_contig7334.15524.1 ID=prot_E_fasciculatus_S2_contig7334.15524.1|Name=mRNA_E_fasciculatus_S2_contig7334.15524.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=139bp
MHDQVERVPQALTSCLTQPPSTNLPTKFYTTAKIYRMNGNGRELCMVYIC
AWVPGTCRICTHHDVRKLVSRTTSLPANSVRKSHLRQRLRMFVPHVGNTW
PPGANLTVNALPTIVGLFPLYYTRCQNVARATLRASSS*
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mRNA from alignment at E_fasciculatus_S2_contig7334:1705..2562+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7334.15524.1 ID=mRNA_E_fasciculatus_S2_contig7334.15524.1|Name=mRNA_E_fasciculatus_S2_contig7334.15524.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=858bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7334:1705..2562+ (Ectocarpus fasciculatus EfasUO2)
AGAGTGTCCCATCGCCGAAAGCCGCGACCGTGTCGCTTGCGGAGAACCAA
ACTGCCGACTAAGTGCGTTATTGTAGGGGGCATCGTAGATGGATAACCCT
TTTCTAGACGGTCAGGATCACATCAATCCTCGGTGTGACATCCAGGAATG
CACGATCAGGTGGAACGTGTGCCGCAAGCCCTAACCAGCTGCTTGACCCA
GCCACCGAGCACAAACTTGCCAACCAAGTTCTACACTACAGCCAAAATTT
ACCGTATGAATGGCAATGGTCGCGAGCTTTGTATGGTATATATATGTGCG
TGGGTCCCAGGCACGTGTAGGATATGTACACACCATGATGTTCGCAAACT
AGTATCGCGTACTACATCCTTACCTGCGAATAGCGTGCGCAAGTCACACT
TGCGACAGAGACTGAGGATGTTCGTTCCTCACGTGGGTAACACTTGGCCG
CCCGGTGCAAACTTGACGGTAAATGCTTTGCCCACAATTGTTGGCTTGTT
TCCCCTGTGCCGAACACCCGTTGATTACGGTGGAGTAGAGCGAAATGCAT
CGGTTTGTAGATTATACTAGGTGTCAAAATGTCGCGAGGGCAACATTACG
TGCAAGCAGTTCCTAACGTGAACTAACCAACGGCATCGATCAGGACCGGT
GCCTCCAAGTAAAAGGGCTGCGCATAACGGCGTCGGTAACACATACGCGA
TAGGGGGGTAAAGTCTTGTGACGCAATGTCGTTTACATCTATGTATGCTA
CCTCCTTTCGCCTAGTTTTAGACCCCTGTGGGACTAACTACTGTACACGA
TGCAGCCTCTTCCGACACATCTCAACGTTTGCTACAAAAATGTCAACAGC
CTGTTGTA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7334:1705..2562+

>mRNA_E_fasciculatus_S2_contig7334.15524.1 ID=mRNA_E_fasciculatus_S2_contig7334.15524.1|Name=mRNA_E_fasciculatus_S2_contig7334.15524.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=417bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7334:1705..2562+ (Ectocarpus fasciculatus EfasUO2)
ATGCACGATCAGGTGGAACGTGTGCCGCAAGCCCTAACCAGCTGCTTGAC
CCAGCCACCGAGCACAAACTTGCCAACCAAGTTCTACACTACAGCCAAAA
TTTACCGTATGAATGGCAATGGTCGCGAGCTTTGTATGGTATATATATGT
GCGTGGGTCCCAGGCACGTGTAGGATATGTACACACCATGATGTTCGCAA
ACTAGTATCGCGTACTACATCCTTACCTGCGAATAGCGTGCGCAAGTCAC
ACTTGCGACAGAGACTGAGGATGTTCGTTCCTCACGTGGGTAACACTTGG
CCGCCCGGTGCAAACTTGACGGTAAATGCTTTGCCCACAATTGTTGGCTT
GTTTCCCCTGTATTATACTAGGTGTCAAAATGTCGCGAGGGCAACATTAC
GTGCAAGCAGTTCCTAA
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