mRNA_E_fasciculatus_S2_contig732.15511.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig732.15511.1 vs.
Match: CAB/ELIP/HLIP (superfamily of protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTS3_ECTSI) HSP 1 Score: 431 bits (1109), Expect = 2.640e-145 Identity = 221/228 (96.93%), Postives = 224/228 (98.25%), Query Frame = 2
Query: 83 MKAVFALCAAMVAGAQAFVPTTTAFSGARVATPASTSAAATTPRMAAGSFSVFENAQAEFAEEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDADVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDSPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNGGLGGLLM 766
MKAVFALCAAMVAGAQAFVPTTTAFSGARVA+PAS SAA TTPRMAAGSFSVF+NAQAEFA EFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDADVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKD+PAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVN GLGGLLM
Sbjct: 1 MKAVFALCAAMVAGAQAFVPTTTAFSGARVASPASASAATTTPRMAAGSFSVFDNAQAEFAAEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDADVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDAPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNAGLGGLLM 228
BLAST of mRNA_E_fasciculatus_S2_contig732.15511.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CWQ9_9STRA) HSP 1 Score: 228 bits (582), Expect = 1.230e-66 Identity = 110/178 (61.80%), Postives = 136/178 (76.40%), Query Frame = 2
Query: 233 SVFENAQAEFAEEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDADVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDSPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNGGLGGLLM 766
SVF++A +F ++FPE+ + GWGPT KAERWNGRHAMFGW AI+ATGY QAH LIPD D LD K WGTLA G TITN RA+I++GH+HAL +SVCAT+APLSFQDKLFL+ GE D PA GLIP+ GLT AE++NGR+AM+GL+V ++ +G L VV+ GLGGLL+
Sbjct: 60 SVFDDATTDFGKQFPEFYQLGWGPTTKAERWNGRHAMFGWVAIVATGYAQAHGLIPDFDKPLDLKEWGTLAIIAGKTTITNGRAVILIGHIHALMMSVCATIAPLSFQDKLFLE--EGEADEPAAGLIPAMDTGLTKSAELWNGRVAMLGLIVLVACSVGSGTPVLNVVDAGLGGLLL 235
BLAST of mRNA_E_fasciculatus_S2_contig732.15511.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CP98_9STRA) HSP 1 Score: 228 bits (582), Expect = 6.320e-66 Identity = 110/178 (61.80%), Postives = 136/178 (76.40%), Query Frame = 2
Query: 233 SVFENAQAEFAEEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDADVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDSPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNGGLGGLLM 766
SVF++A +F ++FPE+ + GWGPT KAERWNGRHAMFGW AI+ATGY QAH LIPD D LD K WGTLA G TITN RA+I++GH+HAL +SVCAT+APLSFQDKLFL+ GE D PA GLIP+ GLT AE++NGR+AM+GL+V ++ +G L VV+ GLGGLL+
Sbjct: 112 SVFDDATTDFGKQFPEFYQLGWGPTTKAERWNGRHAMFGWVAIVATGYAQAHGLIPDFDKPLDLKEWGTLAIIAGKTTITNGRAVILIGHIHALMMSVCATIAPLSFQDKLFLE--EGEADEPAAGLIPAMDTGLTKSAELWNGRVAMLGLIVLVACSVGSGTPVLNVVDAGLGGLLL 287
BLAST of mRNA_E_fasciculatus_S2_contig732.15511.1 vs.
Match: CAB/ELIP/HLIP (superfamily of protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6M5_9STRA) HSP 1 Score: 218 bits (554), Expect = 8.370e-63 Identity = 118/228 (51.75%), Postives = 155/228 (67.98%), Query Frame = 2
Query: 92 VFALCAAMVAGAQAFVPTTTAFSGARVATPAST----SAAATTPRMAAGSFSVFENAQAEFAEEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDADVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDSPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNGGLGGLL 763
VFAL A ++A AF+P ATPAS+ + AA P ++ SVF +A F++++P++ K GWGPT KAERWNGRHAMFGW I+ATGY +AH LIPD +VAL+ K WGTL+ G +TI+NERA++++ +VHAL +S+CA APLSFQD L + G+KD PA GLIP+ VPGLT EAE+ NGR+AM+GLV+ +L TG FL V+ LG L
Sbjct: 3 VFALFALLLASVSAFMP----------ATPASSFVAKAGAAVKPSASSMQMSVFTDATEAFSKDYPDFYKAGWGPTTKAERWNGRHAMFGWVLIVATGYAKAHGLIPDPEVALNLKEWGTLSILAGPQTISNERAVVLIANVHALFMSLCAAFAPLSFQDPLL--IPKGQKDEPAAGLIPAIVPGLTKEAELLNGRLAMLGLVLVMGHSLATGTPFLNSVDLFLGNRL 218
BLAST of mRNA_E_fasciculatus_S2_contig732.15511.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MHN0_9STRA) HSP 1 Score: 218 bits (554), Expect = 8.930e-63 Identity = 110/177 (62.15%), Postives = 132/177 (74.58%), Query Frame = 2
Query: 233 SVFENAQAEFAEEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDADVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDSPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNGGLGGLL 763
SVF +A EFA ++P +KYGWGP+ KAERWNGRHAMFGW AI+ TGYCQAH+LIPDAD LD K WGTLA +G TI+NERAII++ HVHAL VSVCAT+AP+ D L L+ GE D PA G+ P F GLT AE++NGRMAMMGL+ ++ +L TG SFL V+ LGGLL
Sbjct: 47 SVFTDATTEFANDYPMMAKYGWGPSTKAERWNGRHAMFGWFAIVCTGYCQAHHLIPDADKLLDLKEWGTLATISGKATISNERAIILIAHVHALMVSVCATMAPM--MDTLLLE--PGEADEPAAGVFPPFETGLTSAAELWNGRMAMMGLITASSYSLMTGTSFLNTVDLWLGGLL 219
BLAST of mRNA_E_fasciculatus_S2_contig732.15511.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W341_9STRA) HSP 1 Score: 204 bits (519), Expect = 1.100e-57 Identity = 107/193 (55.44%), Postives = 135/193 (69.95%), Query Frame = 2
Query: 188 TSAAATTPRMAAGSFSVFENAQAEFAEEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDADVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDSPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNGGLGGLLM 766
TSA A P + A + VF+NA A+F E++PE+S GWGP+ KAERWNGRHAMFGW II TGY QAH LIP+ D LD K WGTLA +GT+TI+NERAII++ +VHA V + A APLS+ D L L+ GE D G+ P F G+T AE++NGRMAMMG+V T + +L TG F++ VN LGGLL+
Sbjct: 33 TSALAVKP-LEAKTSGVFDNAVAKFKEDYPEFSAAGWGPSTKAERWNGRHAMFGWFFIICTGYAQAHGLIPEGDKLLDLKEWGTLATISGTKTISNERAIILIANVHAFMVGILAAFAPLSYMDTLLLE--DGEADEEPAGVFPPFDTGITSAAELWNGRMAMMGIVTTTSYSLLTGTPFMQTVNLWLGGLLI 222
BLAST of mRNA_E_fasciculatus_S2_contig732.15511.1 vs.
Match: Uncharacterized (protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CBU4_DIALT) HSP 1 Score: 203 bits (517), Expect = 2.130e-57 Identity = 108/196 (55.10%), Postives = 135/196 (68.88%), Query Frame = 2
Query: 194 AAATTPRMAAGSFSVFENAQAEFAEEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDADVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDSPAPGLIPSFVP-----GLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNGGLGGLLM 766
A+A + R A + SVFE A A F ++FPE+SK G+GPT KAERWNGRHAMFGW I+ATGY Q+HNLIP+ D LD WG LA +ITN RAII++ HVHAL VS+ ++++P FQD L L++ A E+D A GL FVP GLT AE+ NGR+AM+GL+ +L TGQ LEVVN GLGGLL+
Sbjct: 31 ASAVSARAAPRAASVFEGAMANFEKDFPEFSKRGFGPTTKAERWNGRHAMFGWVVILATGYAQSHNLIPNFDAPLDLSAWGPLARQGDYSSITNGRAIILIAHVHALFVSLASSLSPFGFQDSLTLNMKAAERDEAAYGL---FVPIPGQAGLTAAAEMMNGRLAMLGLIAAVGASLATGQPLLEVVNTGLGGLLL 223
BLAST of mRNA_E_fasciculatus_S2_contig732.15511.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BP97_9STRA) HSP 1 Score: 203 bits (517), Expect = 5.110e-57 Identity = 115/224 (51.34%), Postives = 147/224 (65.62%), Query Frame = 2
Query: 98 ALCAAMVAGAQAFVPTTTAFSGARVA--TPASTSAAATTPRMAAGSFSVFENAQAEFAEEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDADVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDSPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNGGLGGLL 763
A+ + ++AG AF P SG+R A A T +A + S +VFE+A E+ E+P+++K+GWGP+ KAERWNGRHAMFGW I+A+ Y HNLIP+AD+ALD K WGTLA +G TITNERA+I++ +VHAL VS A +AP SF D+L L GE D GL+P V GLTPEAEI NGRMAMMGL+ T+ ++VVN LGGLL
Sbjct: 35 AIVSCLLAGVSAFSP-----SGSRFAFSPKAVTELSAFNDGRSLVSDAVFEDAMGEWKAEYPKFAKFGWGPSTKAERWNGRHAMFGWFVIVASAYAHGHNLIPNADMALDLKQWGTLATISGKSTITNERAVILIANVHALFVSFLAAMAPSSFADQLLLK--EGEVDEEPYGLVPPLVTGLTPEAEIMNGRMAMMGLIALVGTSAINQMPMVDVVNEWLGGLL 251
BLAST of mRNA_E_fasciculatus_S2_contig732.15511.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JY58_9STRA) HSP 1 Score: 196 bits (498), Expect = 8.410e-55 Identity = 98/179 (54.75%), Postives = 122/179 (68.16%), Query Frame = 2
Query: 233 SVFENAQAEFAEEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDADVALDPKVWGTLAYTTG-TETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDSPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNGGLGGLLM 766
S F A +F ++P ++ YGWG + KAERWNGRHAMFGW II TGY Q+H LIPDAD LD VWGTLA T TITNERAII++ ++HAL VS+CA AP QDKL L+ GE D G+IP F PGL P+AE+ NGR+AM+G+ + +L G F++VVN LGGLL+
Sbjct: 37 SPFTEATDKFKSDYPSFAAYGWGVSPKAERWNGRHAMFGWFFIICTGYAQSHGLIPDADKTLDLSVWGTLAQITPRVSTITNERAIILVANIHALMVSLCAAFAPFPTQDKLLLE--PGEADEDPAGIIPKFTPGLNPDAEMINGRLAMLGITTVSAYSLIYGVPFMDVVNSMLGGLLL 213
BLAST of mRNA_E_fasciculatus_S2_contig732.15511.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q4Z5_9STRA) HSP 1 Score: 195 bits (495), Expect = 3.000e-54 Identity = 97/189 (51.32%), Postives = 125/189 (66.14%), Query Frame = 2
Query: 209 PRMAAGSFSVFENAQAEFAEEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDADVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGE-----KDSPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNGGLGGL 760
P ++ S VF+ A A++ E+P+++K+GWGP+ +AE+WNGRHAMFGW I AT Y + H LIPDAD L+ K WGTLA +G TITNERAII+M +VH V + AT+ PL F D L LD + GE K + A G++P GLT EAEI NGRMAMMGL+ T+ G+ L VVN +GGL
Sbjct: 33 PVVSETSLEVFDKAMADWEAEYPQFAKWGWGPSVQAEKWNGRHAMFGWVFICATAYAKGHGLIPDADTVLNLKEWGTLATISGKNTITNERAIILMANVHCFCVGLLATICPLPFSDPLLLDPNQGEMYEKAKATKAYGVLPEMKTGLTEEAEIMNGRMAMMGLITLTATSFIEGKDMLTVVNDWVGGL 221 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig732.15511.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig732.15511.1 >prot_E_fasciculatus_S2_contig732.15511.1 ID=prot_E_fasciculatus_S2_contig732.15511.1|Name=mRNA_E_fasciculatus_S2_contig732.15511.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=229bp MKAVFALCAAMVAGAQAFVPTTTAFSGARVATPASTSAAATTPRMAAGSFback to top mRNA from alignment at E_fasciculatus_S2_contig732:13412..19679+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig732.15511.1 ID=mRNA_E_fasciculatus_S2_contig732.15511.1|Name=mRNA_E_fasciculatus_S2_contig732.15511.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6268bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig732:13412..19679+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig732:13412..19679+ >mRNA_E_fasciculatus_S2_contig732.15511.1 ID=mRNA_E_fasciculatus_S2_contig732.15511.1|Name=mRNA_E_fasciculatus_S2_contig732.15511.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=687bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig732:13412..19679+ (Ectocarpus fasciculatus EfasUO2)back to top |