mRNA_E_fasciculatus_S2_contig731.15501.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK0_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 3.760e-21 Identity = 50/79 (63.29%), Postives = 53/79 (67.09%), Query Frame = 1
Query: 7 LDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQEDVPRVKN 243
LDELV A H+ CEV C EVKSR TQ KA SYGGDVRKV DMAR +VICD PEALK Y I+ Q DV RV N
Sbjct: 112 LDELVADIAKHTGECEVHCAEVKSRASTQRKASKSYGGDVRKVADMARVSVICDNPEALKRAYLAIVESFQGDVLRVAN 190
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK27_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 9.800e-21 Identity = 54/80 (67.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query: 7 LDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQ-EDVPRVKN 243
LDELVT AA C V CV VKS + T+ KA GGDVRKV DMAR TVICDTPEALK V+S IMGLLQ +DV RVKN
Sbjct: 80 LDELVTNAAEGLETCNVHCVVVKSLESTRRKASQFCGGDVRKVADMARVTVICDTPEALKQVFSKIMGLLQPQDVLRVKN 159
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: Tetratricopeptide (repeat containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH0_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 1.830e-20 Identity = 50/79 (63.29%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 7 LDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQEDVPRVKN 243
LDELV A H+ CEV C EVKSR TQ KAR SYGGDVRKV DMAR +VICD P+ALK Y I+ Q DV RV N
Sbjct: 112 LDELVADIAEHTGECEVHCAEVKSRAITQRKARKSYGGDVRKVADMARISVICDNPQALKRAYLAIVESFQGDVLRVAN 190
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 8.790e-20 Identity = 50/79 (63.29%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 7 LDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQEDVPRVKN 243
LDELV A + C+V C EVKSR TQ KAR SY GDVRKVTDMAR +VICDTPEALK Y I+ Q DV RV N
Sbjct: 1539 LDELVVDIAKDTGGCQVHCAEVKSRASTQRKARKSYDGDVRKVTDMARVSVICDTPEALKRAYLAIVESFQGDVLRVAN 1617
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K147_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 1.620e-19 Identity = 53/80 (66.25%), Postives = 60/80 (75.00%), Query Frame = 1
Query: 7 LDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQ-EDVPRVKN 243
LDELV+K A S + VQ V+VKSR RT+EKAR S GGDVRKV DMAR TV+C TPEALK+VYS I GL + V RVKN
Sbjct: 209 LDELVSKIAHDSCKFVVQYVDVKSRDRTREKARKSCGGDVRKVADMARVTVVCATPEALKEVYSAITGLPKPHHVLRVKN 288
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 3.610e-18 Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 1
Query: 7 LDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQEDVPRVKN 243
LDELV A S++ EVQCVE+KSR+ T+ KA Y GDVRKV DMAR TVIC TPEALK+ Y IM L +V RVKN
Sbjct: 113 LDELVMNVAHDSSKYEVQCVEIKSRESTRRKASTGYDGDVRKVADMARVTVICATPEALKEAYLAIMEL--PEVLRVKN 189
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: TPR (repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT0_ECTSI) HSP 1 Score: 87.0 bits (214), Expect = 3.630e-18 Identity = 47/79 (59.49%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 7 LDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQEDVPRVKN 243
LDELV + C+VQC EVKSR TQ KAR SYG DVRKV DMAR +VICDTPE K Y I+ Q DV RV N
Sbjct: 112 LDELVADITKGTGGCQVQCAEVKSRASTQRKARKSYGADVRKVADMARVSVICDTPETFKRAYLAIVESFQGDVLRVAN 190
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: Kinesin (light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH93_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 6.550e-18 Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 7 LDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQEDVPRVKN 243
LDELVTK A S++ EVQ EVKSR+ T+ KA + GDVRKV DMAR T+IC PEALK+ YS+IM + ++ V R+KN
Sbjct: 112 LDELVTKVAHDSSKYEVQRAEVKSRESTRRKASREHDGDVRKVADMARVTLICANPEALKEAYSSIMEMPEQHVLRIKN 190
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG4_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 3.160e-17 Identity = 50/79 (63.29%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 7 LDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQEDVPRVKN 243
LDE++T A R EVQ VEVKSR+ TQ K R YGGDVRKV DMAR +VIC TPE L+ VYS IMG L DV RV N
Sbjct: 113 LDEIITNLADDWGRYEVQHVEVKSRESTQRKVRRFYGGDVRKVADMARVSVICLTPEDLQHVYSDIMGSL--DVRRVTN 189
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: TPR (repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQL3_ECTSI) HSP 1 Score: 83.2 bits (204), Expect = 8.040e-17 Identity = 50/81 (61.73%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 1 QGLDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQEDVPRVKN 243
Q LDE++T A R EVQ VEVKS + TQ K R Y GDVRKVTDMAR TVIC TPE L+ VYS IMG + DV RV N
Sbjct: 111 QRLDEIITNLADDWGRYEVQYVEVKSWESTQRKVRRLYDGDVRKVTDMARVTVICLTPEDLQQVYSDIMGSM--DVRRVTN 189 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig731.15501.1 >prot_E_fasciculatus_S2_contig731.15501.1 ID=prot_E_fasciculatus_S2_contig731.15501.1|Name=mRNA_E_fasciculatus_S2_contig731.15501.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=81bp QGLDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARback to top mRNA from alignment at E_fasciculatus_S2_contig731:4029..4828+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig731.15501.1 ID=mRNA_E_fasciculatus_S2_contig731.15501.1|Name=mRNA_E_fasciculatus_S2_contig731.15501.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=800bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig731:4029..4828+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig731:4029..4828+ >mRNA_E_fasciculatus_S2_contig731.15501.1 ID=mRNA_E_fasciculatus_S2_contig731.15501.1|Name=mRNA_E_fasciculatus_S2_contig731.15501.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=243bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig731:4029..4828+ (Ectocarpus fasciculatus EfasUO2)back to top |