mRNA_E_fasciculatus_S2_contig731.15500.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig731.15500.1
Unique NamemRNA_E_fasciculatus_S2_contig731.15500.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig731.15500.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A1_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.530e-13
Identity = 47/98 (47.96%), Postives = 64/98 (65.31%), Query Frame = -3 
Query:  166 MLQHIEAACPDTLRTAYHAGAIRFRGIVNAAKLQSSSPLAVPFIDFALDQPAFIALSKDEAEA*AVLQDAFSHHRLEAETEIAEQQFAAAERTREEEA 459
            +L+ IEAA P  L  AY +G+I  R IV+AA+L S  PLAVP +DF LD+  F+ +S DEA+A   LQ  F+  RL+AE + A +   A +R R+EEA
Sbjct:   35 LLRDIEAARPKALAAAYRSGSITLRDIVDAARLSSPHPLAVPTVDFDLDEEEFVEMSNDEADAWTQLQTIFNQ-RLQAELDQAAED--AEQRARDEEA 129
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BLAST of mRNA_E_fasciculatus_S2_contig731.15500.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA88_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.380e-13
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = -3 
Query:  166 MLQHIEAACPDTLRTAYHAGAIRFRGIVNAAKLQSSSPLAVPFIDFALDQPAFIALSKDEAEA*AVLQDAFSHHRLEAETEIAEQQFAAAERTREEEA 459
            +L+ IEAA P  L  AY +G+I  R IV+AA+L S  PLAVP +DF LD+  F+ +S DEA+A   LQ  F+  RL+AE + A +   A +R REEEA
Sbjct:   35 LLRDIEAARPKALAAAYRSGSITLRDIVDAARLSSPHPLAVPTVDFDLDEEEFVEMSNDEADAWTQLQTIFNQ-RLQAELDQAAED--AEQRAREEEA 129
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig731.15500.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD5_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.220e-13
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = -3 
Query:  166 MLQHIEAACPDTLRTAYHAGAIRFRGIVNAAKLQSSSPLAVPFIDFALDQPAFIALSKDEAEA*AVLQDAFSHHRLEAETEIAEQQFAAAERTREEEA 459
            +L+ IEAA P  L  AY +G+I  R IV+AA+L S  PLAVP +DF LD+  F+ +S DEA+A   LQ  F+  RL+AE + A +   A +R REEEA
Sbjct:   35 LLRDIEAARPKALAAAYRSGSITLRDIVDAARLSSPHPLAVPTVDFDLDEEEFVEMSNDEADAWTQLQTIFNQ-RLQAELDQAAED--AEQRAREEEA 129
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig731.15500.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J6_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.490e-12
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = -3 
Query:  166 MLQHIEAACPDTLRTAYHAGAIRFRGIVNAAKLQSSSPLAVPFIDFALDQPAFIALSKDEAEA*AVLQDAFSHHRLEAETEIAEQQFAAAERTREEEA 459
            +L+ IEA  P  L  AY +G+I  + IV+AA+L S  PLAVP +DF LD+  F+ +S DEA+A   LQ  FS  RL+AE + A +   A +R REEEA
Sbjct:   35 LLRDIEADSPKALAAAYRSGSITLQDIVDAARLSSPHPLAVPTVDFDLDEEEFVDMSNDEADAWTQLQTIFSQ-RLQAELDKAAED--AEQRAREEEA 129
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig731.15500.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized1.530e-1347.96protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 131... [more]
Uncharacterized3.380e-1348.98protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.220e-1348.98protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.490e-1247.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig731contigE_fasciculatus_S2_contig731:842..1407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size566
Hectar predicted targeting categoryother localisation
Exons1
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842395.4442592-CDS-E_fasciculatus_S2_contig731:841..12041696842395.4442592-CDS-E_fasciculatus_S2_contig731:841..1204Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig731 842..1204 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842395.453543-UTR-E_fasciculatus_S2_contig731:1204..14071696842395.453543-UTR-E_fasciculatus_S2_contig731:1204..1407Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig731 1205..1407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig731.15500.1prot_E_fasciculatus_S2_contig731.15500.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig731 842..1204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig731.15500.1

>prot_E_fasciculatus_S2_contig731.15500.1 ID=prot_E_fasciculatus_S2_contig731.15500.1|Name=mRNA_E_fasciculatus_S2_contig731.15500.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=121bp
RRDRRLGDSTPPRFELLAPRLHVGKHFPAPLFFGAPLLLRALCNPLGFFL
LSSPRGLLLASPFRGRELLLRDLRLGLQSMMAKGILQYRSRFCLIFRQGN
ERGLVQGKIDKRNGKGGRRL*
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mRNA from alignment at E_fasciculatus_S2_contig731:842..1407+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig731.15500.1 ID=mRNA_E_fasciculatus_S2_contig731.15500.1|Name=mRNA_E_fasciculatus_S2_contig731.15500.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=566bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig731:842..1407+ (Ectocarpus fasciculatus EfasUO2)
CGGAGGGACCGAAGGCTTGGGGACTCGACGCCTCCTCGCTTCGAGCTCCT
TGCGCCTCGTCTCCATGTCGGCAAACATTTTCCGGCGCCGCTCTTCTTCG
GCGCGCCTCTCCTCCTCCGCGCGTTGTGCAACCCTCTCGGCTTCTTCCTC
TTGAGCTCTCCGCGTGGCCTCCTCCTCGCGAGTCCGTTCCGCGGCCGCGA
ACTGTTGCTCCGCGATCTCCGTCTCGGCCTCCAGTCGATGATGGCTAAAG
GCATCCTGCAATACCGCTCACGCTTCTGCCTCATCTTTAGACAGGGCAAT
GAACGCGGGCTGGTCCAGGGCAAAATCGATAAACGGAACGGCAAGGGGGG
AAGAAGATTGTAGCTTGGCCGCATTCACAATGCCCCTGAAGCGGATGGCA
CCCGCGTGGTATGCCGTGCGCAAAGTGTCAGGACAGGCTGCCTCGATGTG
TTGAAGCATCTTGCGTGCCGGGATGCCATCGTACACCAGAGGAATCGGGG
TTTCCTCTTCTTCTTCGCTTCCTTCATAGTCCAAAAGTTCTCCGTCTCCT
GACATTGGTGCGCCTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig731:842..1407+

>mRNA_E_fasciculatus_S2_contig731.15500.1 ID=mRNA_E_fasciculatus_S2_contig731.15500.1|Name=mRNA_E_fasciculatus_S2_contig731.15500.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=363bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig731:842..1407+ (Ectocarpus fasciculatus EfasUO2)
CGGAGGGACCGAAGGCTTGGGGACTCGACGCCTCCTCGCTTCGAGCTCCT
TGCGCCTCGTCTCCATGTCGGCAAACATTTTCCGGCGCCGCTCTTCTTCG
GCGCGCCTCTCCTCCTCCGCGCGTTGTGCAACCCTCTCGGCTTCTTCCTC
TTGAGCTCTCCGCGTGGCCTCCTCCTCGCGAGTCCGTTCCGCGGCCGCGA
ACTGTTGCTCCGCGATCTCCGTCTCGGCCTCCAGTCGATGATGGCTAAAG
GCATCCTGCAATACCGCTCACGCTTCTGCCTCATCTTTAGACAGGGCAAT
GAACGCGGGCTGGTCCAGGGCAAAATCGATAAACGGAACGGCAAGGGGGG
AAGAAGATTGTAG
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