mRNA_E_fasciculatus_S2_contig7307.15498.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7307.15498.1
Unique NamemRNA_E_fasciculatus_S2_contig7307.15498.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7307.15498.1 vs.
Match: 60S (acidic ribosomal protein P0 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP25_ECTSI)

HSP 1 Score: 494 bits (1272), Expect = 3.800e-169
Identity = 280/286 (97.90%), Postives = 283/286 (98.95%), Query Frame = 1 
Query:   40 MAKIRYALRGSATVLMGKNTMIRKIISVFLKDNPGHPLELILPRIVGNVGFIFTNGELGDIRDVIEAHRVPAPARVGSIAPIDVMVPPGPTGCDPGQTSFFQVLQVPTKITKGQIEITTTVFLVPKGQKVGSSEAALLQKLSIRPFTYGLVIDCVYDNGSVFDAAVLDLTDADMGDKFAAACGNVAAVSLELGFPTLASLPHSIANAFRALVGVVIEGCDTYSFEQADTIKAILADPSAFAASXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMSMFGAEEGGGDY 897
            MAKIRYALRGSATVLMGKNTMIRKIISVFLKDNPGHPLELILPR+VGNVGFIFTNGELGDIRDVIEAHRVPAPARVGSIAPIDVMVPPGPTGCDPGQTSFFQVLQVPTKITKGQIEITT VFLVPKGQKVGSSEAALLQKLSIRPFTYGLVIDCVYDNGSVFDAAVLDLTD DMG+KFAAACGNVAAVSLELGFPTLASLPHSIANAFRALVGVVIEGCDTYSF+QADTIKAILADPSAFAASXXXXXXXXXXXXXXXXXXXXXXX IDMGGGMSMFGAEEGGGDY
Sbjct:    1 MAKIRYALRGSATVLMGKNTMIRKIISVFLKDNPGHPLELILPRVVGNVGFIFTNGELGDIRDVIEAHRVPAPARVGSIAPIDVMVPPGPTGCDPGQTSFFQVLQVPTKITKGQIEITTQVFLVPKGQKVGSSEAALLQKLSIRPFTYGLVIDCVYDNGSVFDAAVLDLTDEDMGNKFAAACGNVAAVSLELGFPTLASLPHSIANAFRALVGVVIEGCDTYSFDQADTIKAILADPSAFAASXXXXXXXXXXXXXXXXXXXXXXX-IDMGGGMSMFGAEEGGGDY 285
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BLAST of mRNA_E_fasciculatus_S2_contig7307.15498.1 vs.
Match: RL10P_insert (domain-containing protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D0Z1H1_PIG)

HSP 1 Score: 406 bits (1043), Expect = 1.930e-133
Identity = 248/337 (73.59%), Postives = 268/337 (79.53%), Query Frame = 1 
Query:    1 LFLFQADNVGSNQMAKIRYALRGSATVLMGKNTMIRKIISVFLKDNPGHPLELILPRIVGNVGFIFTNGELGDIRDVIEAHRVPAPARVGSIAPIDVMVPPGPTGCDPGQTSFFQVLQVPTKITKGQIEIT--------------------------------TTVFLVPKGQKVGSSEAALLQK----LSIRPFTYGLVIDCVYDNGSVFDAAVLDLTDADMGDKFAAACGNVAAVSLELGFPTLASLPHSIANAFRALVGVVIEGCDTYSFEQADTIKAILADPSAFAASXXXXXXXXXXXXXXXXXXXXXXXX-IDMGGGMSMFGAEEGG-GDY 897
            +FL QADNVGS+QMAKIR+ALRG+ATVLMGKNTMIRKIIS ++KD+PGHP EL+LP++VGN+GFIFTNGELG IRDVIE HRVPAPARVGS+AP DV VPPGPTGCDPGQTSFFQVLQVPTKITKGQIEIT                                  V +V +G    S   A   K    L+IRPFTYGL+IDCVYDNGSVFDAAVLDLTDADM +KFAAAC NVAAVSLELGFPTLASLPHSIANAFRA+VGVVIEGC TYSF QADT+KAILADPSAFAA XXXXXXXXXXXXXXXXXXXXXXXX +DMGG   MFG EE G GDY
Sbjct:   25 IFLVQADNVGSSQMAKIRFALRGTATVLMGKNTMIRKIISTYVKDHPGHPFELLLPKVVGNIGFIFTNGELGAIRDVIEEHRVPAPARVGSVAPTDVKVPPGPTGCDPGQTSFFQVLQVPTKITKGQIEITFAAACANVAAVSLELGFPTLASLPHSIANAFRAMVGVVIEGCSTYSFAQADTVKAILALNIRPFTYGLMIDCVYDNGSVFDAAVLDLTDADMANKFAAACANVAAVSLELGFPTLASLPHSIANAFRAMVGVVIEGCSTYSFAQADTVKAILADPSAFAAXXXXXXXXXXXXXXXXXXXXXXXXXEVDMGGAGGMFGEEEAGDGDY 361
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7307.15498.1 vs.
Match: 60S (acidic ribosomal protein P0 n=16 Tax=Peronosporaceae TaxID=4777 RepID=D0NVM9_PHYIT)

HSP 1 Score: 357 bits (917), Expect = 3.510e-115
Identity = 204/298 (68.46%), Postives = 242/298 (81.21%), Query Frame = 1 
Query:    1 LFLFQADNVGSNQMAKIRYALRGSATVLMGKNTMIRKIISVFLKDNPGHPLELILPRIVGNVGFIFTNGELGDIRDVIEAHRVPAPARVGSIAPIDVMVPPGPTGCDPGQTSFFQVLQVPTKITKGQIEITTTVFLVPKGQKVGSSEAALLQKLSIRPFTYGLVIDCVYDNGSVFDAAVLDLTDADMGDKFAAACGNVAAVSLELGFPTLASLPHSIANAFRALVGVVIEGCDTYSFEQADTIKAILADPSAFAASXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMSMFGAEEGGGD 894
            +FL   DNVGS QM +IR  LRG A VLMGKNT++RK+ + F+K NPGHPLEL +P + GNVGF+FTN +L +IR+V+E++RVPAPARVGSIAP+DV+VPPGPTG DPGQTSFFQ LQ+ TKI KGQIEI T V L  KG+KVG+SEAALLQKL I+PF+YGLVI+ VYDNGS+FD AVLDLT+AD+  KF A   NVAA+SLELG PTLAS+PHSIANAF+ LV + +E C+ +SFE+A+  KA LADPSAFA +    XXXXXXXXXXXXXXXXXX  +DMGGGM MFG    GGD
Sbjct:   25 IFLVGVDNVGSAQMQQIRLVLRGRAEVLMGKNTLMRKVFNNFVKKNPGHPLELFIPLLKGNVGFVFTNDDLSEIREVLESNRVPAPARVGSIAPVDVIVPPGPTGADPGQTSFFQALQIATKIQKGQIEIVTEVMLTRKGEKVGNSEAALLQKLDIKPFSYGLVIEQVYDNGSIFDPAVLDLTEADLCAKFVAGLRNVAAMSLELGIPTLASIPHSIANAFKDLVAIAVE-CEEFSFEKAEPYKAFLADPSAFAVAAPAGXXXXXXXXXXXXXXXXXX--VDMGGGMDMFG----GGD 315
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7307.15498.1 vs.
Match: 60S (acidic ribosomal protein P0 n=11 Tax=Peronosporaceae TaxID=4777 RepID=M4B8B5_HYAAE)

HSP 1 Score: 354 bits (908), Expect = 7.530e-114
Identity = 200/294 (68.03%), Postives = 240/294 (81.63%), Query Frame = 1 
Query:    1 LFLFQADNVGSNQMAKIRYALRGSATVLMGKNTMIRKIISVFLKDNPGHPLELILPRIVGNVGFIFTNGELGDIRDVIEAHRVPAPARVGSIAPIDVMVPPGPTGCDPGQTSFFQVLQVPTKITKGQIEITTTVFLVPKGQKVGSSEAALLQKLSIRPFTYGLVIDCVYDNGSVFDAAVLDLTDADMGDKFAAACGNVAAVSLELGFPTLASLPHSIANAFRALVGVVIEGCDTYSFEQADTIKAILADPSAFAASXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMSMFGAEE 882
            +FL   DNVGS QM +IR  LRG   VLMGKNT++RK+ + F+K NPGHPLE  +P + GNVGF+FTN +L +IR+V+E++RVPAPARVG+IAP+DV+VPPGPTG DPGQTSFFQ LQ+ TKI KGQIEI + V L  KG+KVG+SEAALLQKL I+PF+YGLVI+ VYDNGS+FD AVLDLT+AD+  KF A   NVAAVSLELG PTLAS+PHSI NAF+ LV + +E C+ +SFE+A+  KA LADPSAFA +    XXXXXXXXXXXXXXXXXXX +DMGGGM MFGAE+
Sbjct:   25 IFLVGVDNVGSAQMQQIRLVLRGRGEVLMGKNTLMRKVFNSFVKKNPGHPLENFIPLLKGNVGFVFTNDDLTEIREVLESNRVPAPARVGAIAPVDVVVPPGPTGADPGQTSFFQALQIATKIQKGQIEIVSEVMLTKKGEKVGNSEAALLQKLDIKPFSYGLVIEQVYDNGSIFDPAVLDLTEADLCAKFVAGLRNVAAVSLELGLPTLASIPHSITNAFKDLVAIAVE-CEEFSFEKAEPYKAFLADPSAFAVAAPAGXXXXXXXXXXXXXXXXXXX-VDMGGGMDMFGAED 316
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7307.15498.1 vs.
Match: 60S (acidic ribosomal protein P0 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAY4_GLOUD)

HSP 1 Score: 352 bits (903), Expect = 4.080e-113
Identity = 173/256 (67.58%), Postives = 212/256 (82.81%), Query Frame = 1 
Query:    1 LFLFQADNVGSNQMAKIRYALRGSATVLMGKNTMIRKIISVFLKDNPGHPLELILPRIVGNVGFIFTNGELGDIRDVIEAHRVPAPARVGSIAPIDVMVPPGPTGCDPGQTSFFQVLQVPTKITKGQIEITTTVFLVPKGQKVGSSEAALLQKLSIRPFTYGLVIDCVYDNGSVFDAAVLDLTDADMGDKFAAACGNVAAVSLELGFPTLASLPHSIANAFRALVGVVIEGCDTYSFEQADTIKAILADPSAFAAS 768
            +FL   DNVGSNQ+ +IR +LRG A +LMGKNT+IRK+ S ++K NPGHPLE ++P + GNVGF+FTN +L  IR+V+E+++VPAPARVG++APIDV++PPGPTGCDPGQT+FFQ LQV TKI KGQIEI   V L  KG+KVG+SEA LLQKL+IRPFTYGLVI  VYDNGS+FD AVLDLT+ D+  KF A   NVAAVSLE+GFPTLAS+PHS+ANAF+ LV VV+E  D++SF +AD  KA LADPSAFAA+
Sbjct:   25 IFLVGVDNVGSNQIQQIRISLRGRAEILMGKNTLIRKVFSNYIKKNPGHPLEQVIPLLKGNVGFVFTNQDLNQIREVLESNKVPAPARVGAVAPIDVIIPPGPTGCDPGQTAFFQALQVGTKIQKGQIEIINEVLLTKKGEKVGNSEAVLLQKLNIRPFTYGLVIQTVYDNGSIFDPAVLDLTEDDLTAKFVAGLRNVAAVSLEIGFPTLASIPHSVANAFKTLVAVVVE-LDSFSFAKADPYKAYLADPSAFAAA 279
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7307.15498.1 vs.
Match: 60S (acidic ribosomal protein P0 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLB6_9STRA)

HSP 1 Score: 352 bits (903), Expect = 4.360e-113
Identity = 178/294 (60.54%), Postives = 222/294 (75.51%), Query Frame = 1 
Query:    1 LFLFQADNVGSNQMAKIRYALRGSATVLMGKNTMIRKIISVFLKDNPGHPLELILPRIVGNVGFIFTNGELGDIRDVIEAHRVPAPARVGSIAPIDVMVPPGPTGCDPGQTSFFQVLQVPTKITKGQIEITTTVFLVPKGQKVGSSEAALLQKLSIRPFTYGLVIDCVYDNGSVFDAAVLDLTDADMGDKFAAACGNVAAVSLELGFPTLASLPHSIANAFRALVGVVIEGCDTYSFEQADTIKAILADPSAFAASXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMSMFGAEE 882
            +FL   DNV S QM +IR +LRG A +LMGKNT++RK+   FL+ NP HPLE+++P I GN+GF+FTN +L DIR V+E++RVPAPARVG++AP DV+VPPG TGCDPGQTSFFQ LQ+ TKI KGQIEI + V L+ +G+KVG+SEAALLQKL+I PF+YGLV+  VYDNGSVFD AVLDLT+ D+  KF A   NVAAVSLE+G PTLAS+PHSIANAF++LV V +E C+TYSFE+A+  KA LADPSAFA +                        +D+GGGM MFGA++
Sbjct:   25 IFLVSVDNVRSKQMQQIRQSLRGRAEILMGKNTLMRKVFGNFLRKNPNHPLEMVVPLIRGNIGFVFTNDDLNDIRSVLESNRVPAPARVGAVAPADVVVPPGSTGCDPGQTSFFQALQIATKIQKGQIEIVSEVLLIKEGEKVGNSEAALLQKLNINPFSYGLVLVSVYDNGSVFDPAVLDLTEEDLFAKFIAGLRNVAAVSLEIGIPTLASIPHSIANAFKSLVAVAVE-CETYSFEKAEPFKAYLADPSAFAVASSGQIEAGKDKKEEKAEVEEEE--MDLGGGMDMFGADD 315
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7307.15498.1 vs.
Match: 60S (acidic ribosomal protein P0 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2YPM3_HETAK)

HSP 1 Score: 352 bits (902), Expect = 5.950e-113
Identity = 174/254 (68.50%), Postives = 211/254 (83.07%), Query Frame = 1 
Query:    4 FLFQADNVGSNQMAKIRYALRGSATVLMGKNTMIRKIISVFLKDNPGHPLELILPRIVGNVGFIFTNGELGDIRDVIEAHRVPAPARVGSIAPIDVMVPPGPTGCDPGQTSFFQVLQVPTKITKGQIEITTTVFLVPKGQKVGSSEAALLQKLSIRPFTYGLVIDCVYDNGSVFDAAVLDLTDADMGDKFAAACGNVAAVSLELGFPTLASLPHSIANAFRALVGVVIEGCDTYSFEQADTIKAILADPSAFAA 765
            F+   DNVGS+QM +IR ALRG A VLMGKNTM+RK+I+ F+K NPGHP E I  ++ GNVG +FTNG+LG++R  IE +RVPAPARVGSIAP++V+VPPGPTGCDPGQTSFFQVLQ+ TKI++GQIEI   V L+  G KVG+SEAALLQKL I+PFTYGLVID +YDNGS+FDA VLDLTDAD+  KF AA   +A+V LE+G+PTLAS+PHSIANAF+ LV V +E C+T+SFE+A+  KA LADPSAFAA
Sbjct:   24 FIVGVDNVGSHQMQQIRLALRGEAEVLMGKNTMMRKVIAEFMKKNPGHPFEQISAKLRGNVGLVFTNGDLGEVRTKIEENRVPAPARVGSIAPVEVIVPPGPTGCDPGQTSFFQVLQIATKISRGQIEIVAPVSLLSAGDKVGNSEAALLQKLDIKPFTYGLVIDSIYDNGSLFDAKVLDLTDADLQAKFMAAVSKLASVCLEIGYPTLASMPHSIANAFKKLVAVAVE-CETFSFEKAEPYKAYLADPSAFAA 276
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7307.15498.1 vs.
Match: 60S (acidic ribosomal protein P0 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D366_9STRA)

HSP 1 Score: 351 bits (901), Expect = 9.300e-113
Identity = 173/255 (67.84%), Postives = 212/255 (83.14%), Query Frame = 1 
Query:    1 LFLFQADNVGSNQMAKIRYALRGSATVLMGKNTMIRKIISVFLKDNPGHPLELILPRIVGNVGFIFTNGELGDIRDVIEAHRVPAPARVGSIAPIDVMVPPGPTGCDPGQTSFFQVLQVPTKITKGQIEITTTVFLVPKGQKVGSSEAALLQKLSIRPFTYGLVIDCVYDNGSVFDAAVLDLTDADMGDKFAAACGNVAAVSLELGFPTLASLPHSIANAFRALVGVVIEGCDTYSFEQADTIKAILADPSAFAA 765
            +F+   DNVGS QM +IR ALRG+ATVLMGKNT IRK++++FLK NPGHP+E ++  + GNVGF+FTNG+LG +R+ +E +RVPAPARVGS+AP +V+VPPGPTGCDPGQTSFFQ LQ+ TKITKGQIEITT V ++ +G KVG+SEA LLQKL+I PFTYGLVI  +YDNGS+FD  VLDLTDAD+  KFA A  NVAA+SL+LG+PTLASLPHSIANAF+A V V + G + +SFE+A+  KA L DPSAFAA
Sbjct:   26 VFVVGVDNVGSKQMQQIRQALRGTATVLMGKNTRIRKVMNIFLKKNPGHPIEQLVNYVGGNVGFVFTNGDLGSVRETLEENRVPAPARVGSLAPCNVIVPPGPTGCDPGQTSFFQALQIATKITKGQIEITTAVQILKEGDKVGNSEAILLQKLNILPFTYGLVIQTIYDNGSLFDPKVLDLTDADLAAKFAVAVRNVAAISLQLGYPTLASLPHSIANAFKACVAVAV-GLEEFSFEKAEPFKAYLKDPSAFAA 279
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7307.15498.1 vs.
Match: 60S (acidic ribosomal protein P0 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P6IAI3_9CRUS)

HSP 1 Score: 351 bits (900), Expect = 1.190e-112
Identity = 179/299 (59.87%), Postives = 221/299 (73.91%), Query Frame = 1 
Query:    1 LFLFQADNVGSNQMAKIRYALRGSATVLMGKNTMIRKIISVFLKDNPGHPLELILPRIVGNVGFIFTNGELGDIRDVIEAHRVPAPARVGSIAPIDVMVPPGPTGCDPGQTSFFQVLQVPTKITKGQIEITTTVFLVPKGQKVGSSEAALLQKLSIRPFTYGLVIDCVYDNGSVFDAAVLDLTDADMGDKFAAACGNVAAVSLELGFPTLASLPHSIANAFRALVGVVIEGCDTYSFEQADTIKAILADPSAFAASXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMSMFGAEEGGGDY 897
            +FL   DNVGS+QM +IR  LRG A +LMGKNT++RK+ S F+K NPGHPLE  +P + GNVGF+FTN +L  IR+V+E ++VPAPARVG+IAP+DV++P GPTGCDPGQTSFFQ L + TKI KGQIEI T V +V +G+KVG+SEAALLQKL+IRPF YGLVI  VYDNGS+FD AVLDLT+ D+  KFAA   NVAA+SLE+GFPTLAS+PHS+ANAF+ LV + +E C+T+SF++AD  KA LADPSAFA +                         D+GG   MFG   GG DY
Sbjct:   25 IFLVNVDNVGSHQMQQIRLELRGRAELLMGKNTLMRKVFSNFIKKNPGHPLENFIPLLKGNVGFVFTNADLNQIREVVEGNKVPAPARVGAIAPVDVIIPAGPTGCDPGQTSFFQTLSIGTKIAKGQIEIVTDVLMVKQGEKVGNSEAALLQKLNIRPFAYGLVISQVYDNGSLFDPAVLDLTEDDLCAKFAAGLRNVAAISLEIGFPTLASIPHSVANAFKTLVAIAVE-CETFSFKKADPFKAYLADPSAFAVAAGPAAGADAGAAKVEEVEEEEE--ADIGGATDMFG---GGSDY 317
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7307.15498.1 vs.
Match: 60S (acidic ribosomal protein P0 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRE1_9STRA)

HSP 1 Score: 349 bits (896), Expect = 1.930e-112
Identity = 173/251 (68.92%), Postives = 206/251 (82.07%), Query Frame = 1 
Query:    1 LFLFQADNVGSNQMAKIRYALRGSATVLMGKNTMIRKIISVFLKDNPGHPLELILPRIVGNVGFIFTNGELGDIRDVIEAHRVPAPARVGSIAPIDVMVPPGPTGCDPGQTSFFQVLQVPTKITKGQIEITTTVFLVPKGQKVGSSEAALLQKLSIRPFTYGLVIDCVYDNGSVFDAAVLDLTDADMGDKFAAACGNVAAVSLELGFPTLASLPHSIANAFRALVGVVIEGCDTYSFEQADTIKAILADPS 753
            + L Q DNVGS QMA+IR ALRG A VL+GKNTMIRKI++ ++K NPGHP E ++PR+ GNVGFIFTNG+LG +R+VIE +RVPAPARVG++AP+DV VPPGPTGCDPGQTSFFQVLQ+PTKI KGQIEIT  V LV KG KVG+SEA LL +LSIRPFTYGLVI+ VYDNGS+F+AAVLDLTD D+  +F  A  NVAA SL LG+PTLASLPHSIANAF+ALV V ++ C   +F QA+  K +L  P+
Sbjct:   25 ILLVQCDNVGSRQMAQIRLALRGQAVVLLGKNTMIRKILTNYIKQNPGHPYENLIPRVRGNVGFIFTNGDLGKVREVIEENRVPAPARVGAVAPVDVFVPPGPTGCDPGQTSFFQVLQIPTKIAKGQIEITNEVHLVKKGDKVGNSEAVLLTRLSIRPFTYGLVIELVYDNGSIFEAAVLDLTDDDLRARFVGAVRNVAAASLALGYPTLASLPHSIANAFKALVAVAVQ-CPGVTFAQAEPFKKLLPAPA 274
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7307.15498.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
60S3.800e-16997.90acidic ribosomal protein P0 n=1 Tax=Ectocarpus sil... [more]
RL10P_insert1.930e-13373.59domain-containing protein n=1 Tax=Sus scrofa TaxID... [more]
60S3.510e-11568.46acidic ribosomal protein P0 n=16 Tax=Peronosporace... [more]
60S7.530e-11468.03acidic ribosomal protein P0 n=11 Tax=Peronosporace... [more]
60S4.080e-11367.58acidic ribosomal protein P0 n=1 Tax=Globisporangiu... [more]
60S4.360e-11360.54acidic ribosomal protein P0 n=1 Tax=Albugo laibach... [more]
60S5.950e-11368.50acidic ribosomal protein P0 n=2 Tax=Heterosigma ak... [more]
60S9.300e-11367.84acidic ribosomal protein P0 n=1 Tax=Nannochloropsi... [more]
60S1.190e-11259.87acidic ribosomal protein P0 n=1 Tax=Daphnia magna ... [more]
60S1.930e-11268.92acidic ribosomal protein P0 n=1 Tax=Tribonema minu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7307contigE_fasciculatus_S2_contig7307:3006..7008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score496.5
Seed ortholog evalue8.3e-138
Seed eggNOG ortholog2880.D8LP25
Preferred nameRPP0
Model size2059
KEGG koko:K02941
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005507,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006950,GO:0006970,GO:0008150,GO:0009266,GO:0009409,GO:0009506,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0015934,GO:0016020,GO:0022625,GO:0022626,GO:0030054,GO:0031974,GO:0031981,GO:0032991,GO:0034059,GO:0036293,GO:0042221,GO:0042788,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0046686,GO:0046872,GO:0046914,GO:0048046,GO:0050896,GO:0055044,GO:0070013,GO:0070482,GO:0071944,GO:1990904
Exons5
EggNOG free text desc.ribosome biogenesis
EggNOG OGsCOG0244@1,KOG0815@2759
Ec32 ortholog descriptionRibosomal protein L10/acidic P0
Ec32 orthologEc-06_006850.1
Cds size861
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7307.15498.1prot_E_fasciculatus_S2_contig7307.15498.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7307 4165..6969 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842395.0652046-UTR-E_fasciculatus_S2_contig7307:3005..41641696842395.0652046-UTR-E_fasciculatus_S2_contig7307:3005..4164Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7307 3006..4164 -
1696842395.1427484-UTR-E_fasciculatus_S2_contig7307:6969..70081696842395.1427484-UTR-E_fasciculatus_S2_contig7307:6969..7008Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7307 6970..7008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842395.080881-CDS-E_fasciculatus_S2_contig7307:4164..43321696842395.080881-CDS-E_fasciculatus_S2_contig7307:4164..4332Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7307 4165..4332 -
1696842395.092295-CDS-E_fasciculatus_S2_contig7307:4945..52511696842395.092295-CDS-E_fasciculatus_S2_contig7307:4945..5251Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7307 4946..5251 -
1696842395.103494-CDS-E_fasciculatus_S2_contig7307:5824..58961696842395.103494-CDS-E_fasciculatus_S2_contig7307:5824..5896Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7307 5825..5896 -
1696842395.1143494-CDS-E_fasciculatus_S2_contig7307:6415..66101696842395.1143494-CDS-E_fasciculatus_S2_contig7307:6415..6610Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7307 6416..6610 -
1696842395.1282713-CDS-E_fasciculatus_S2_contig7307:6849..69691696842395.1282713-CDS-E_fasciculatus_S2_contig7307:6849..6969Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7307 6850..6969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7307.15498.1

>prot_E_fasciculatus_S2_contig7307.15498.1 ID=prot_E_fasciculatus_S2_contig7307.15498.1|Name=mRNA_E_fasciculatus_S2_contig7307.15498.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=287bp
MAKIRYALRGSATVLMGKNTMIRKIISVFLKDNPGHPLELILPRIVGNVG
FIFTNGELGDIRDVIEAHRVPAPARVGSIAPIDVMVPPGPTGCDPGQTSF
FQVLQVPTKITKGQIEITTTVFLVPKGQKVGSSEAALLQKLSIRPFTYGL
VIDCVYDNGSVFDAAVLDLTDADMGDKFAAACGNVAAVSLELGFPTLASL
PHSIANAFRALVGVVIEGCDTYSFEQADTIKAILADPSAFAASSGGGGGG
GDAPAAAAPVEEEEEEEIDMGGGMSMFGAEEGGGDY*
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mRNA from alignment at E_fasciculatus_S2_contig7307:3006..7008-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7307.15498.1 ID=mRNA_E_fasciculatus_S2_contig7307.15498.1|Name=mRNA_E_fasciculatus_S2_contig7307.15498.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4003bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7307:3006..7008- (Ectocarpus fasciculatus EfasUO2)
CTTTTCCTCTTCCAGGCCGACAACGTGGGGTCTAACCAGATGGCCAAGAT
CCGCTATGCGCTTCGCGGCTCCGCCACGGTGCTCATGGGCAAGAACACGA
TGATCCGCAAGATCATCAGCGTCTTCCTCAAGGACAACCCGGGCCACCCC
CTGGAGCTGGTGCGTCCAAGGTTTATTTCCTTCGCACGTCGTGGTACCTG
GTAGTTGTCTTCGAACATGCTGCACTGCTGTTGTACGGGATGTAACCGCA
GATTCCCCCGGCAGTCCACATCCCAACCTGTTTGGTTGTTCTCTTGCCCT
TGGAAAGGACTTGCGTTCCCCGGAGCCACGATTTCCCCTCACTTGCCATA
TTTTTGCTGCCCCACCTTCCTTTTCGCCTCCCCCCCCGTCTGCTGCAGAT
CCTCCCCCGCATCGTGGGCAACGTGGGCTTCATCTTCACCAACGGTGAGC
TCGGCGACATCCGCGACGTGATCGAGGCCCACCGCGTGCCCGCCCCGGCC
CGTGTGGGTTCCATCGCGCCCATCGACGTTATGGTGCCCCCCGGCCCCAC
CGGCTGCGACCCCGGACAGACGTCTTTCTTCCAAGTGCTCCAGGTGTGTG
TGTAGTTGTTGTCTGTCTTTTGGGGGGAGTGTGTTTGTTTTTTGCTGCCC
GTCTCTGGTGTGTTTGTTGCGAATGTTTGATACTGGTTCGTGCGAGTTGT
TTGATAACCACGATTCTTTGTAACAGTGCCCGCAGGGGTAGTATTTAATG
GATGGGTGTGGTGTGTGCCCTTGATGCCCACAACAAGAACGGCGTTACCC
TGTTACATGGAAGTAGTAAGAAGGTTTGTGTATGTGTTTTTACCTCGACA
GAGAAGAGGGGGTTACAGTAGCGCTGTGTCTCAAACCCGTTTTCCTTGCT
GCGCGTTCGATGGCCCTGGCCGTCCATCGCCGTGCCTTATTCTTTGTCTC
TCCGCCGTCCGCGGGAAGAATCGTGGGTTGTCCCTCTCGCTTCAACGATA
AATGGAAATTACGGTGTTGCGTCTCGCTGACGCCGCTCGCCGTACGTACC
GTCCACCCGCACGCCTCTCTCCGTCTCCTCGCCCGGTCTGTATCACTTAC
CGCTCGTAACAGGTGCCCACCAAGATTACCAAGGGTCAGATCGAAATCAC
CACTACGGTGTTCCTCGTGCCCAAGGGCCAGAAGGTACGCGTCGTTGTCG
TTGTCGTCGTGCATGCATGCGTGCATGTGAAGGCACCACTGGTGGGAGCT
TTGCCTGGCTGGTAGTGTTGACGACGGACTTGAGAGTGTCGCCTGTGCCT
CTAGAGAGTTCGTGATTGAAAGCACGAGAATAGGTGCGATGTATGATGGT
CGAGGAGTCGCCGAAGCTGGTTCTTTGTTGCGTTTCGTCCCCTGCTTGCG
TGGCGTGCTGTGTCCTCTACCTAACGCTTTTGCCGATGCCCCCTCGAGAG
TTTGAAAAAGTCGAGGTCCCTTTTTTTCGATCATCCCGCGTTCTGCGGGA
GGATACCATACAGCCAGCTTGCCTACCGTGTTCGGCTCTGCTTCAGGGAG
GCGGCGTGTGCATCACCAGGCCACGCTCTCTCCCCGTCCTTCCCTCTCAA
GCACGCCCAACTTGGGCAATTAATTCGCGTTCGTGATAAGACAGCAGCTT
GCCGTGTTTGACGCCCCGTCGAGGGAGGCGGCGTGCATGACCAGACCACG
CTCTCTTCCCTCTCTCAAACCCATCCAACCCAAACAACACGAACGAACAA
ACAACAGGTCGGCAGCTCCGAAGCGGCCCTGCTGCAGAAGCTGAGCATCC
GCCCCTTCACGTACGGCCTGGTGATCGACTGCGTGTACGACAACGGTTCG
GTGTTCGACGCCGCCGTGCTGGACCTGACGGACGCCGACATGGGCGACAA
GTTCGCCGCGGCCTGCGGTAACGTGGCGGCCGTCTCCCTGGAGCTCGGCT
TCCCTACCCTGGCGTCCCTGCCCCACTCGATCGCCAACGCGTTCCGCGCG
CTGGTGGGCGTCGTGATCGAGGGTTGCGACACCTACTCGTTCGAGCAGGC
CGACACGATCAAGGTGACGAGCCGGTCGCGTGGAATAACACGGGGCAGGG
CAGATGCTCTGGCGGGTGGCGATTTTGGCTGACCAGACCACAGCCGTCTT
GCCGATTAGCTGGCCTTAACGGTATGCAGTGTTCAGTGGTTGTTTCGTCG
TTGTTCTTGAAGAGCAGCGGCGGCAAGGGTGTCCTGGATAATTCAAAGCG
CGCTACTGCACCAAGGCTTGAGCGAGGTCCTCCCCCGGTTGGTCCGCCCT
CCGCTGGTGCCAAAGGAGGCAGGACGATAGGAAGGAATCTGGCGTGCAAA
GGTTGACAAGAATGAGGGAGCTTTTGCTGTCGAGCTTTGCCCAACAAGAT
CGTCTTTTTCAACACAGAAGAGAGCGAGCGGATCGTTGTATTGTAGACCG
CTAGGTATCTGCCGGAGTGAAACCTTCATCGCTATTTATCACGTTGGATC
TGGCTCCCTTGTTCCTTGCAGAGATTTATTTCGTTTCTAGTGTAGGAGTG
TCCATGAGGCCTTGCGGTGACCGCCTGGGTCGTTCTCTGATCCTGCCACC
ACGCAACACGAATGTTGTGTTGACACCATTCATTTTCCGATGTCGTCTGT
GCCTACCCTCTTGCTTTGTGCTGCAGGCTATCCTGGCCGACCCGAGCGCC
TTCGCGGCCAGCTCTGGCGGTGGTGGAGGCGGCGGCGACGCGCCGGCCGC
CGCTGCCCCCGTGGAGGAGGAGGAGGAGGAGGAGATCGACATGGGCGGCG
GCATGAGCATGTTCGGCGCCGAGGAGGGCGGAGGAGACTACTAAACCCGG
ACCCTTTCATGCTGAATCTTGAGAGAGTGGAGGTCTCTTTGATGCCGGCG
GAGGAGAGGTGTCGATGGACACGAGCAGCAGGAAGCGGGTGTTGGGAAAT
CTCTGTCGTTTCTTCTTGCGTTGCGACGAGGGCACTTTTTGAATAAAAAT
CGTTTAAGAACGAAAAGAACTGGTCTTGCGGTTTGGTTTCTGTTGGAAGC
AAGCGCCCGTGATGGCGCTAGAAGCACGGACCATACGTGCACCGGCCGCG
GCCGCCCGAAGCATCCCCTCTAATCTCGTTGAGAGCAGGGGCCCTGCGTT
GCTGCATGATGCGCTCCTGCCGCTACAAGTTCGCAGGTGGCAGTGCCTTG
CAGGCGTTTTCTATCGCGGGCTTCTATTGATGAAACGGGTTGATTTCGGA
GGGCGATATGCCGAGGATCGCCTCGCTTTCTCCCTCAAGACGGCCGTGCG
AACAATCGCCGGTACCCCGTTTGTGGTAGGCCTTCATGGTTCCGCCCCAA
GTTTTTTTGCCAATCCTGCAACAGCCCATGTGGCTGGCGGCATGGTTGTT
TCGTCTGCGACGGCCGGTGCAAACCAGATTATCCCGAAGTGGCGGGGGTG
GGGCGAACGACGAGAACCACACCCATCCCGCGACCGCATGACGTTCTCCA
TCTCCGTGGTAAAGAACGGCCGACGTATATGATCGCTTCTTGCATCTCGA
CCACCTACACTACAAGTTGGCCGCTACTCCTCGTGTCCAACCAATCAATT
TGGGGGAGAGCGCGCTGCCTTCATCCCCGGAAACAAAGCCCAACGAAAAA
CAAAACAAAAACAAACAACGACAAATCGCGTAGCTACCAGCAGGGGAGAC
GGACACACGGAAGCACTCACGACACGCACGGAGTTACAGTTGCACATCAT
CATCACGAAGAGCACGTGTTTGCCCGTAGCGGTTACACGGCAGCCGCTTA
GCCAAAGGTCTCGCTACCCTGTTACGTTATTACGGCTTTTTCTCCAAGCA
ACGAGCTACATATATACTCTCGGCTCGTTGCTTGGAGATAATCAAGCTCT
TGACCTCGACCATGACATACGATTGTTGGGCTGGCTTCACTCAGAACGGT
CTACAATATCTTGACCGACGAAATGCCGTGATGTCGTCAGAGGTGCCCGG
CAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7307:3006..7008-

>mRNA_E_fasciculatus_S2_contig7307.15498.1 ID=mRNA_E_fasciculatus_S2_contig7307.15498.1|Name=mRNA_E_fasciculatus_S2_contig7307.15498.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=861bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7307:3006..7008- (Ectocarpus fasciculatus EfasUO2)
ATGGCCAAGATCCGCTATGCGCTTCGCGGCTCCGCCACGGTGCTCATGGG
CAAGAACACGATGATCCGCAAGATCATCAGCGTCTTCCTCAAGGACAACC
CGGGCCACCCCCTGGAGCTGATCCTCCCCCGCATCGTGGGCAACGTGGGC
TTCATCTTCACCAACGGTGAGCTCGGCGACATCCGCGACGTGATCGAGGC
CCACCGCGTGCCCGCCCCGGCCCGTGTGGGTTCCATCGCGCCCATCGACG
TTATGGTGCCCCCCGGCCCCACCGGCTGCGACCCCGGACAGACGTCTTTC
TTCCAAGTGCTCCAGGTGCCCACCAAGATTACCAAGGGTCAGATCGAAAT
CACCACTACGGTGTTCCTCGTGCCCAAGGGCCAGAAGGTCGGCAGCTCCG
AAGCGGCCCTGCTGCAGAAGCTGAGCATCCGCCCCTTCACGTACGGCCTG
GTGATCGACTGCGTGTACGACAACGGTTCGGTGTTCGACGCCGCCGTGCT
GGACCTGACGGACGCCGACATGGGCGACAAGTTCGCCGCGGCCTGCGGTA
ACGTGGCGGCCGTCTCCCTGGAGCTCGGCTTCCCTACCCTGGCGTCCCTG
CCCCACTCGATCGCCAACGCGTTCCGCGCGCTGGTGGGCGTCGTGATCGA
GGGTTGCGACACCTACTCGTTCGAGCAGGCCGACACGATCAAGGCTATCC
TGGCCGACCCGAGCGCCTTCGCGGCCAGCTCTGGCGGTGGTGGAGGCGGC
GGCGACGCGCCGGCCGCCGCTGCCCCCGTGGAGGAGGAGGAGGAGGAGGA
GATCGACATGGGCGGCGGCATGAGCATGTTCGGCGCCGAGGAGGGCGGAG
GAGACTACTAA
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