mRNA_E_fasciculatus_S2_contig730.15494.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig730.15494.1
Unique NamemRNA_E_fasciculatus_S2_contig730.15494.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig730.15494.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ32_ECTSI)

HSP 1 Score: 1236 bits (3199), Expect = 0.000e+0
Identity = 710/785 (90.45%), Postives = 734/785 (93.50%), Query Frame = 1 
Query:   22 VAVMVGDRRAVKKFISGHGDLDEKDEDGATALFHAAFWTHVEIAKDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPRQCEGTGVDRQPDGENFDDXXXXXGPRGSGAVSETPSAGDESTVVGDPGGQDHDAGFSSGKSPNRPHDERSAAASSSPRTTRNRSGAHAGDTGRAKENMDSTSTRTHFRVAYRPTIRGGGTWHPMTAYLFEPSAHGAVRNAHQARIDGDQHHPFVDSDNGNAVEDCDKTIPPGTQVVVRPRFPRTCCVSPVNSTVVWMKDVHAVPFEVRPPASTSSGTISGCVDFYVGAVLIGQAYVEMAVVKPNDSSGAADKPDVLGPVAKAFDAMYVCFAAADKPLLLPSLEWFNRLGIFNIVWRPEDGNERDTKRLIRESSIFQICWSMSAKESDRVRNEVKYASSLAKAGSLAVRGIYWDPTMDVTSIQTAQGLMFPVRLHNSFLLEEACSFILDRTADTASSTPGTSTGDRAGGGQNARVEDDGDHHDVAVAVPNVEKLNTAAVQHTRGHISRLRDMVCGAKEVDCPRLAWIYPDDSGKARSVDITTDEWLKKPIRLVFLCPISMKPGWCGQDGRGYKVSLPRGWGSKIGMALKIGVVVVAAASDADEVAGLPLPPASAVSSWGEDGEGEKSLTQMQGDLVNAAFDGLAGAVPDKSNDLIDSTFMDAETETSASPAAAQLCKEVKQSYKNLSSLLNQKYDKGLKNTGLEKVTYAGSGGNS 2376
            +AVMVGDRRAVKKFI+G GDLDEKD+DGATALFHAAFWTHVEIAKDL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              TPRQCEGTGVDRQPDGENFDDXXXXXGPRGSGAVSE PSAGDESTVVGDPG QD DAGFSSGKSPNRPHDERSAAASSSPRT+RNRSGAHAGDTGRAKEN+D+ STR HFR AYRPTIRGGG WHPMTAYLFEPSAH AVRNAHQARIDGDQHHPFVDSDNGNAVEDCDKTIPPGTQVVVRPRFPRTCCVSPVNSTVVWMKDVHAVPFEVRPPASTSSGTISG VDFY+GAVLIGQA+VEM+VVKPNDSSGAADKPDVLGPVAKAFD MYVCFAAADKPLL+PSLEWFNRLGIFNIVWRPEDGNE+DTKRLIRESSIFQICWSMSAKESDRVR+EVKYASSLAKAGSLAVRGIYWD TMDVTSIQTA GLMFPVR+HNSFLLEEAC+F+LDR ADTASSTP T+TG  AGGGQ+ARVEDDGDH+D AVAVPNVEKLNTAAVQHTRGH+SRLRDMV GA EVDCPRLAWIYPDDSGK RSVDITTDEWLKKPIRLVFLCPISMKPGWCGQDGRGYK+SLPRGWGSKIGMALKIGVVVVAAASDADEVAGLPLPP SAVSSWGEDGEG KSLTQMQGDLVNAAFDGLAGAVPDK NDLIDSTFMDAETETSA PA AQLCKEVKQSYKNLSSLL+QKYDK  K     K+ Y G+GG+S
Sbjct:    1 MAVMVGDRRAVKKFINGSGDLDEKDDDGATALFHAAFWTHVEIAKDLISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGASSEVLNHMGQTPRQCEGTGVDRQPDGENFDDXXXXXGPRGSGAVSEAPSAGDESTVVGDPGVQDRDAGFSSGKSPNRPHDERSAAASSSPRTSRNRSGAHAGDTGRAKENVDAASTRAHFRAAYRPTIRGGGKWHPMTAYLFEPSAHSAVRNAHQARIDGDQHHPFVDSDNGNAVEDCDKTIPPGTQVVVRPRFPRTCCVSPVNSTVVWMKDVHAVPFEVRPPASTSSGTISGYVDFYIGAVLIGQAHVEMSVVKPNDSSGAADKPDVLGPVAKAFDTMYVCFAAADKPLLIPSLEWFNRLGIFNIVWRPEDGNEKDTKRLIRESSIFQICWSMSAKESDRVRHEVKYASSLAKAGSLAVRGIYWDSTMDVTSIQTAHGLMFPVRMHNSFLLEEACAFLLDRAADTASSTPETATGALAGGGQSARVEDDGDHNDGAVAVPNVEKLNTAAVQHTRGHVSRLRDMVGGANEVDCPRLAWIYPDDSGKPRSVDITTDEWLKKPIRLVFLCPISMKPGWCGQDGRGYKISLPRGWGSKIGMALKIGVVVVAAASDADEVAGLPLPPVSAVSSWGEDGEGGKSLTQMQGDLVNAAFDGLAGAVPDKWNDLIDSTFMDAETETSARPATAQLCKEVKQSYKNLSSLLHQKYDKVCK----VKI-YTGTGGSS 780
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig730.15494.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCB7_9PHAE)

HSP 1 Score: 361 bits (927), Expect = 3.680e-116
Identity = 197/216 (91.20%), Postives = 201/216 (93.06%), Query Frame = 1 
Query: 1987 MALKIGVVVVAAASDADEVAGLPLPPASAVSSWGEDGEGEKSLTQMQGDLVNAAFDGLAGAVPDKSNDLIDSTFMDAETETSASPAAAQLCKEVKQSYKNLSSLLNQKYDKGLKNTGLEKVTYAGSGGNSPITEWVHPSVAELFRSQGPSVFGSGALATADADATREAVRRHKEQNKRS-DGGNRPGSEDVMSTLRLLEKQVLAMAGGGARGSGGA 2631
            MALKIGVVVVAAASDADEVAGLPLPPA+AVSSWGEDGEG KSLTQMQGDLVNAAFDGLAGAVPDKSNDLIDS FM+AETETSA PA AQLCKEVKQSYKNLSSLL+QKYDKG     LEKVTYAGS G SP TEWVHPSVAELFRSQGPSVFG+GALATADADA REAVRRHKEQ KRS DGGNRPGSEDVMSTLRLLEKQVLAMAGGGARGSGGA
Sbjct:    1 MALKIGVVVVAAASDADEVAGLPLPPATAVSSWGEDGEGGKSLTQMQGDLVNAAFDGLAGAVPDKSNDLIDSIFMNAETETSAPPATAQLCKEVKQSYKNLSSLLHQKYDKG-----LEKVTYAGSRGTSPTTEWVHPSVAELFRSQGPSVFGAGALATADADAAREAVRRHKEQKKRSSDGGNRPGSEDVMSTLRLLEKQVLAMAGGGARGSGGA 211
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig730.15494.1 vs.
Match: Flavodoxin-like (domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y427_AURAN)

HSP 1 Score: 71.6 bits (174), Expect = 6.500e-9
Identity = 66/225 (29.33%), Postives = 98/225 (43.56%), Query Frame = 1 
Query: 1726 VQHTRGHISRLRDMVCGAKEVDCPRLAWIYPDDSGKARSVDITTDEWLKKPIRLVFLCPISMKPGWCGQDGRGYKVSLPRGWGSKIGMALKIGVVVVAAASDADEVAGLPLPPASAVSSWGEDGEGEKSLTQMQGDLVNAAFDGLAGAVPDKSNDLIDSTFMDAETETSASPAAAQLCKEVKQ-SYKNLSSLLNQKYDKGLKNTGLEKVTYAGSGGNSPITEWVH 2397
            V  TRG    L D+   A E  CP+L W+  +    A +  +T   W  KP+R+ F+CP++M+    G+DG GY+V LP+ W  K G+A+ + + V+  A        L         +   D   +++  +   +L      GL  A  D                  A    A  CK + + S++ L   L +K D GL  TGL KV   G  G +  TEWVH
Sbjct: 1095 VDATRGQTRLLMDLCSDATE--CPKLVWMAREKEA-AVTRWLTPSSWYGKPVRVQFVCPVTMQVAKSGKDGGGYRVVLPKDWIKKWGVAVNLSLTVLRVAMQ------LGAASMGCYHAHVPDMTIDRARLKTADELYEEVNKGLDPATRD------------------ALEKGAPECKALSEASFQMLKGEL-KKEDPGLDLTGLVKVV--GGSGATLCTEWVH 1289
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig730.15494.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized0.000e+090.45protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.680e-11691.20protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Flavodoxin-like6.500e-929.33domain-containing protein n=1 Tax=Aureococcus anop... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig730contigE_fasciculatus_S2_contig730:17833..27011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1245.3
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FQ32
Model size2634
Hectar predicted targeting categoryother localisation
Exons16
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_007650.1
Cds size2634
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig730.15494.1prot_E_fasciculatus_S2_contig730.15494.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig730 17833..27011 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842394.512455-CDS-E_fasciculatus_S2_contig730:17832..181461696842394.512455-CDS-E_fasciculatus_S2_contig730:17832..18146Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig730 17833..18146 -
1696842394.5275874-CDS-E_fasciculatus_S2_contig730:18746..188401696842394.5275874-CDS-E_fasciculatus_S2_contig730:18746..18840Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig730 18747..18840 -
1696842394.5455024-CDS-E_fasciculatus_S2_contig730:19121..194251696842394.5455024-CDS-E_fasciculatus_S2_contig730:19121..19425Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig730 19122..19425 -
1696842394.556334-CDS-E_fasciculatus_S2_contig730:19631..197861696842394.556334-CDS-E_fasciculatus_S2_contig730:19631..19786Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig730 19632..19786 -
1696842394.5677624-CDS-E_fasciculatus_S2_contig730:20041..202321696842394.5677624-CDS-E_fasciculatus_S2_contig730:20041..20232Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig730 20042..20232 -
1696842394.5815036-CDS-E_fasciculatus_S2_contig730:20425..206151696842394.5815036-CDS-E_fasciculatus_S2_contig730:20425..20615Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig730 20426..20615 -
1696842394.5943756-CDS-E_fasciculatus_S2_contig730:21120..213091696842394.5943756-CDS-E_fasciculatus_S2_contig730:21120..21309Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig730 21121..21309 -
1696842394.6029007-CDS-E_fasciculatus_S2_contig730:21587..218211696842394.6029007-CDS-E_fasciculatus_S2_contig730:21587..21821Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig730 21588..21821 -
1696842394.6119742-CDS-E_fasciculatus_S2_contig730:22213..224021696842394.6119742-CDS-E_fasciculatus_S2_contig730:22213..22402Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig730 22214..22402 -
1696842394.6217134-CDS-E_fasciculatus_S2_contig730:22869..230301696842394.6217134-CDS-E_fasciculatus_S2_contig730:22869..23030Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig730 22870..23030 -
1696842394.6312964-CDS-E_fasciculatus_S2_contig730:23637..237661696842394.6312964-CDS-E_fasciculatus_S2_contig730:23637..23766Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig730 23638..23766 -
1696842394.6413035-CDS-E_fasciculatus_S2_contig730:24300..244001696842394.6413035-CDS-E_fasciculatus_S2_contig730:24300..24400Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig730 24301..24400 -
1696842394.6582613-CDS-E_fasciculatus_S2_contig730:24752..248421696842394.6582613-CDS-E_fasciculatus_S2_contig730:24752..24842Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig730 24753..24842 -
1696842394.6726727-CDS-E_fasciculatus_S2_contig730:25873..260801696842394.6726727-CDS-E_fasciculatus_S2_contig730:25873..26080Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig730 25874..26080 -
1696842394.6890242-CDS-E_fasciculatus_S2_contig730:26527..265871696842394.6890242-CDS-E_fasciculatus_S2_contig730:26527..26587Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig730 26528..26587 -
1696842394.7010105-CDS-E_fasciculatus_S2_contig730:26984..270111696842394.7010105-CDS-E_fasciculatus_S2_contig730:26984..27011Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig730 26985..27011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig730.15494.1

>prot_E_fasciculatus_S2_contig730.15494.1 ID=prot_E_fasciculatus_S2_contig730.15494.1|Name=mRNA_E_fasciculatus_S2_contig730.15494.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=878bp
MTDVDLQVAVMVGDRRAVKKFISGHGDLDEKDEDGATALFHAAFWTHVEI
AKDLISAGANLYAKRNDGFTALHVAAKNNQPRITEVLVDAMDDLDLKEEF
GDTALHCAYRNKATECIEILLAGGASSEVLNHMGETPRQCEGTGVDRQPD
GENFDDDDDDDGPRGSGAVSETPSAGDESTVVGDPGGQDHDAGFSSGKSP
NRPHDERSAAASSSPRTTRNRSGAHAGDTGRAKENMDSTSTRTHFRVAYR
PTIRGGGTWHPMTAYLFEPSAHGAVRNAHQARIDGDQHHPFVDSDNGNAV
EDCDKTIPPGTQVVVRPRFPRTCCVSPVNSTVVWMKDVHAVPFEVRPPAS
TSSGTISGCVDFYVGAVLIGQAYVEMAVVKPNDSSGAADKPDVLGPVAKA
FDAMYVCFAAADKPLLLPSLEWFNRLGIFNIVWRPEDGNERDTKRLIRES
SIFQICWSMSAKESDRVRNEVKYASSLAKAGSLAVRGIYWDPTMDVTSIQ
TAQGLMFPVRLHNSFLLEEACSFILDRTADTASSTPGTSTGDRAGGGQNA
RVEDDGDHHDVAVAVPNVEKLNTAAVQHTRGHISRLRDMVCGAKEVDCPR
LAWIYPDDSGKARSVDITTDEWLKKPIRLVFLCPISMKPGWCGQDGRGYK
VSLPRGWGSKIGMALKIGVVVVAAASDADEVAGLPLPPASAVSSWGEDGE
GEKSLTQMQGDLVNAAFDGLAGAVPDKSNDLIDSTFMDAETETSASPAAA
QLCKEVKQSYKNLSSLLNQKYDKGLKNTGLEKVTYAGSGGNSPITEWVHP
SVAELFRSQGPSVFGSGALATADADATREAVRRHKEQNKRSDGGNRPGSE
DVMSTLRLLEKQVLAMAGGGARGSGGA*
back to top

mRNA from alignment at E_fasciculatus_S2_contig730:17833..27011-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig730.15494.1 ID=mRNA_E_fasciculatus_S2_contig730.15494.1|Name=mRNA_E_fasciculatus_S2_contig730.15494.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=9179bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig730:17833..27011- (Ectocarpus fasciculatus EfasUO2)
ATGACAGATGTGGACCTCCAAGTTGCGGTATGGTCTCACCACTGCGTCAA
TTGTTGTTGTTGGTGTTGTTGTCTTCACATTAAGTGGCTGTTGTGATTTC
ACTCAAGGCTTCGCAGAGAATGTTGCAGGAGATATTTTGGGGCAGTTGGT
GGCAAAGGCGGAACGAGGGAGGTACTGCTGTAGGTGTCGCGTGGCCGGCT
ATGTAAAAGAGATGCTCTGTACGTTGTGTGTTGTGTGCAACACGTACGAG
GCAGCTAATGTACATCTAGACTACTGTCAGTCTAACGATGAAGTGAACTG
AAACATGTCGTTCAGTTCTTGCAACGACGGAAAAGCTGATTCCTTCCTGT
GAAGCAACATTTTCCCACACACGTATGCACACGCAACACACGCTCTCGCA
CGGTTCGAACGGTCATATGCATAGGTCATGGTTGGCGACCGACGAGCCGT
CAAGAAGTTTATCAGTGGGCACGGCGATCTTGATGTGAGTGAAATCGCTT
CTAACAGAGTAACCGAAATAGCTGCTATACTGCTACGCATTACAAGTATC
GTTGTTCTACATAGCACTTGCGAGTGAGGGTTGGACTTATGTACAATTGT
GTGCTTATTCTGTAACTGGCTCACTTGTTCGAGTAGAGGACAACGCCGAA
CCAAGAAATCTACAGGAAAAATGCGTGCTGTGCACCAACGCCTACCTACA
TGGATGTTTGTTTACTCCAAGAAAAAAACAGAGGAACTTTGGCGATGTCC
ACATAACCTTCACATAAGGCCAACCAAGCGTTTCTTGGGCGTAGATATTC
ATGCTGCTTGCTTGCCGAGTCAGTCTTCACTGCAGATAGATGGAATATAC
TGCAAATCATTTTTAACCCCCATCTTTCGACTTTTCTCATCTGCACATCC
ACCACCGCAAACAACACTGCCACCATCCCAGGAAAAAGATGAGGACGGGG
CAACGGCGCTGTTCCATGCAGCCTTTTGGACCCACGTGGAGATTGCGAAG
GACCTGATCTCCGCCGGAGCCAACCTGTACGCCAAGAGAAACGATGGGTT
CACCGCTCTCCACGTGGCTGCTAAGAACAACCAACCTCGCATAACCGAAG
TTTTGGTTGACGCAATGGACGATTTGGACTTGAAGGAGGTAAAGGACAAC
CTGCAAGACAGAACGAGGCGATTCATATGGGCACTTGTTTATGAGAAAAT
GTTGAAAACCCACCTCTCCATTGTGTACGGAAAACCGCCATATTTTCCGT
GGGTTCAAGGTTCAACTCCTTGGGATACAGTCCCCGTGGTTTTACTCAAA
AACCTTCACAACCATTCACCAAACCTGCGCTGTAGTGGTGATCCATACTA
CCAGCAGTCTACTTGTGCGTGATGGCTTTAGGACGCTCATCTGTGCAGGG
CGAAGTCCCGTGCGGAGTAGGACGTTTGTTGGAGGTTGGGGCATGATCCG
TTCAGGAAAATTTTCTTGGAGTGCGTACAATGGATAATCTCATGCATCAT
GGACGTCAGGTAGTACATCTTTCGGTGTGTTTCTGGACACACCAGCCGGG
GTTCCCCAGGAGGAAGTCCAAGTCCCTTGCACCCTTGCCTTTAGTATGTA
CCATATCGGGAGAAGGATACGGCCGCCCCTTTCCCTCGCCGATCATGAAG
TTGATTTGTTTGTGTACTCACAATATATTCGCTCGCCACATTGTATGGAA
CTTACGATAAGAATTAATTTTCGATTGATTTGGGAGAAACACTTGTGAAG
ATAGAAAACAAGACCACGGAGTAGAACATACCAGTCACAGTCCAAAACCA
GCTTCTATAACAGGCCCAGAGTAAAGGGACGACGAATGCCTCCAGGGTGT
TGTCTCGCAACCCAATTTACCAGTAACACCCCATTTGCGGACACCACAGC
ACAAGAAAGGCAAACGCTCTCGTGGGTAGATCCTTTTCATTCTTATTGAC
TCCCGAAACACCAACACCCCAACAGAACACAACGAACCATGGCCTACCTA
CCCGAGTCGACGTAGAAATCCCAGCACATTCAAGTCAAGGGGACGGAAAC
GAAACAACGGGGAAGTTGTTTATGCTAAACATGCAGAGTTATCTAACCTA
AACTTTGTGTATGGCATGCACGATGTGCGTTCGACTCGTGTGTCCTGACC
GCACGTGGCTCATTCGTAGGAGTTCGGCGACACCGCTCTTCATTGCGCAT
ACCGCAATAAAGCTACCGAATGTATCGAGATACTTCTCGCAGGGGGCGCA
AGCTCGGAGGTGAGGTGGCGGAGATCCCCAGCAACTATTTAGGCTTCCCC
TCTTGTTTCAATAGTTCTACCATTCTTTGTTGCAGTTACTGACCGCCTTG
AAGTCAGCTGATGCCGTACGACGTTAAAAACTGTACCAACAACAGGTGTG
TTTCACTCGGTTGGGTGTCGAAATTTGTGTCAGGATGGGCTTCCTATGCA
TAGATGTCGTCGTTCTTTTGCCGCCCTTGCTCATTAGCAACGGGCTCTCA
GAACGTGCTTGGGCCGTTTCAAAGCCACCCTTGTCAGTCACACGTTTCCT
TGCAATCATACCAAGACCAAAACTCACGACTGGGTCTCTGCCTGTACCTT
GAATAATGAAGGTTCTCAATCACATGGGGGAAACCCCTAGGCAGTGCGAG
GGGACAGGGGTGGACAGGCAGCCAGACGGGGAAAACTTCGACGATGACGA
TGATGACGACGGTGAGATCTCGTGCAACTACACCAGTACATCCCTGGCTG
GGTATGCGTGCCATGAACAACGCTTTGAGAAAGGCAGGACGTGAATGTCA
TAGTTTCTGCAGATAGGTTCAGTTTCGAACGACCAATCAACGGCCACGTC
GGGCGACGGATGCATAGTTCCTACAACAGCCGAAAAACTCTCAAGTTCTC
TCTGTGAGTTTGGGGTCGAGGCCGATCCGTACAGGGGATGTATGGCACTC
GGTGTTGGTTTGTCTGGGTTGTCGGTTGATAGCTGTTGTACAGAAGTGAA
CGGCCTCGACTTGTGGGAGGAGTTGAAAGATCTCAGAAAAGTAATGTTGA
ATGACATGCCGGTACTCGCCGGCCGTGCCGCTGTTTTGGGCACCTGTCGA
ACATGATAGCATCGCGGACTCCACAAACAACGACAATCAAGTACTACGAC
AACAATGGTTGACCCGCGCCCGTTGATCATGCCGTGTGCAAACTTGCGAC
AACTGCAACGCTCGACACGGCGGCACGGTCTTGCGTGAAAAAAAGGTCCT
CGTGGATCGGGGGCAGTTTCAGAAACGCCGAGCGCTGGTGATGAAAGCAC
GGTTGTGGGCGACCCCGGAGGTCAAGACCACGACGCTGGATTTTCCTCCG
GAAAGAGTCCAAACAGGCCGCACGGTATGATAAGGCAGCGAACCACGAAG
TAGTACTCAAATTACTTTATGACGGCACTCTGAAACCCGTCAAAGTGCCC
CAAAGGAATATCCTAACTTCGGCCAGGGCACCTACGTTTAGCAACCCTGG
CCTTCTTTGCTAGTTTAGATGTGTCTTGGCCTTCAGCGTGCATGTTTTCT
CCGTGCGTAAACCTGTAGGTTAGTGGTCTGCAGGTTCCATTGAGTCCATA
CCAGGGCGCCCACTCACCACACCCGGTAATTGGCAGGTAGTGCATGAAAT
TAGCCCGCAATCTTCGTCTGTGTCTCGTTGAACAGAGTACTGGTTCTCTT
TGTGCCTTGGCCGAAGGGGCTTCTCGGCGTTGGAAACTGTTGACGTGCAT
CAACGGCTCTCCACAAAAAGCTGCAGGGTCTGCATGTAGCGTCGGGACCC
CGCCCCATGTTTTTCTGTCCAGAGAAAGAACGGTATCAAAGGGCACCGGA
AGTACGTCGTGTTGTGCACGGAACGACCAAAAGCCTAGCTGATTTCTAGT
ATCAGACGTTATTGTCCCAAACAACCCCGCCATGACAACGCGCTAACGCA
AGCATGCATCTACACACATCCATCCACCCAGACGAAAGATCCGCGGCCGC
GAGTAGCAGTCCGAGGACGACTCGCAACCGTTCCGGTGCGCACGCGGGTG
ACACTGGGCGGGCGAAGGAGAATATGGATTCAACGTCTACGAGGACCCAC
TTTCGCGTCGCGTACCGGCCAACCATCAGGGGTGGAGGAACGGTGTGGTG
TGAAGGAAGCAGCGTGTGGAACTGAAGCCTTTGCACCAGAGTTGCCGTAG
AAATCCGCCTTGAAATCGCCGTCACTAAGTTCACGGGGTTCCTCGAGACG
CAATCCTGTATCTCTGTGTTGTGATCACACAGTGAAACACATCAATAGGT
TATTGATTCATATCACCGTTAGTTCTGAAGGGTTGTACTCTGGACGTGGG
ACGGAAGCCGCAAACTCCTGGAGGGTAGTCACTAGTCTCCGCAAACTCCT
GGAGGGTAGTCACTAGTCTCCGCAAAGTCCTGCTCATAGCTCTCGAAAGA
CCCACCGAAACGGCAACACAAACGTGATTAGAGAAGCACTGCCATCCAAT
AAGAACACCACTTGTACCCTCCCCCTTGCCTTCCCAACTCGTGCGTTCCC
ACTCGTTCTTTCTTGGGCATACTGAAAACAACATCAACGTGACCACCTAC
AAAATGAAGTGGCACCCGATGACAGCGTACCTTTTCGAGCCGTCGGCGCA
CGGCGCGGTACGCAACGCGCACCAAGCTCGCATCGACGGCGACCAGCACC
ACCCCTTCGTGGATTCAGACAACGGCAACGCCGTCGAGGATTGCGACAAG
ACCATCCCTCCGGGAACCCAAGTTGTCGTCCGACCTAGATTCCCGCGGGT
AAGCACAACTCGCCAAACCTTGTGCTCGGTTAGCGGACAGGCAACAGTCT
CCACCCAGGTGGCTTTTGTCACCCTTTGCAGAACCTGCTGGGGTTCAGGC
TAGGCTGGACTGCTCGGAGCTGAAACTCACACGGAATAGCATAACAGGGT
TTGGGCTTCGTAGGCAAGACCATTTTCCCTGAGCACGCTGAAAAGTGTAC
CCGCCAACGCGCAGCAACCAATACTGTGTGTTGCAGTCACACCCCCTCAA
GTGTACTCACATTTCCCCCCTCCCTAATTTACTGTGTAGTTCGTCGGTCC
ATCCAATCCACCCTCTGTTGTAGCCTATTGTCCCTGTGATCAAACTCCAT
TTCTTTGCCGCGCGACACCTATCGTAAACACCCGACACAGACCTGCTGCG
TTAGCCCTGTCAACTCCACGGTGGTGTGGATGAAGGACGTCCACGCCGTC
CCTTTCGAGGTGCGCCCGCCGGCGTCTACCAGCAGCGGTACAATCTCCGG
CTGCGTGGACTTCTACGTTGGGGCGGTGCTGATAGGCCAGGCCTACGTCG
AGATGGCCGTAGTGAAGCCGAACGACAGCAGTGGCGCCGCGGACAAGCCT
GATGTTCTCGGCCCAGTCGCGAAGGTGACTGGTGGATGTGCGCTTGAAGG
GGGGAGGGGGGGGGGGGTCATCGCGTGATCTTGTCTCGTGATTGGTTTAG
GGAGAGGGCCGTCTCAACTTTTGTTGGCTGGAACAATACCTGTTGTTTTT
CACAACGAAACGAAAGACACCAATATAAACAACCTCCCCATGTTCCCCTG
AAACCGAAGCACCTGTCGGCGTTTCGTGCGCCCTGTGTACCTTCTCCCCT
TTTGCCACGTCGCGTCACGTCATGTGTCATACCATGACACGTCAAATTCA
AGGCGTTCGACGCGATGTACGTCTGCTTCGCTGCCGCCGACAAGCCGCTT
CTGCTACCGTCCCTCGAATGGTTCAACCGCTTGGGCATCTTTAACATCGT
TTGGCGGCCGGAGGATGGAAACGAGAGGGATACGAAACGCCTAATACGAG
AATCGTCCATCTTCCAGATATGCTGGTCGATGTCTGCCAAGGTGCGATGG
ATGGTATGCTGTATGCGAACGTGCGACCAACCACACCACCGGTCGGCGGG
TGGCGCAGCTAGCCGTGTTGTGCGTTTCAAAAACCCACGAAGCTAGGTGT
CAAAATGAACCATACGCTTCGGCGAAAGCTGTATCCATGTGTTGCTCTTT
GCCGAAACGTCGCCCACGGCTTTTGACTTCCTGTGGTCCTTATTTCTGGC
TTCTATGTCGTGTGTCCTGTGTGTGTCGTCATGTCCATTGTGGACGTCAA
TTTCGACGCCTTTCAGTATGTTTTCTGGACGAGTCAGGTGGGTTTGCGCT
GGAGGAAGGCCTGCACAGGATTTTTTCATTTTCTTCTCCACCTTCTTGCT
TCAGTACCTGCCTTCATTATTTTCGCGAACGAATTAAACCATCCCTTGCT
CTGGTCAGCCATAAAGTCGAATTTGATGTGTACATAGGCGTTGGCGGAAC
AGAAATTGCCCCCGCCCCTCCCCTCACTCCCCGTGGCCTCTTCCAGGAGA
GTGACCGCGTCCGGAACGAGGTCAAGTACGCGAGTTCGCTGGCCAAGGCC
GGATCATTGGCTGTCCGAGGCATCTACTGGGACCCGACCATGGATGTGAC
TTCCATACAAACGGCCCAAGGGCTGATGTTTCCCGTCCGGCTGCACAACT
CGTTCCTGCTGGAGGAGGCCTGTTCTTTTATTCTAGGTGCGGTGTGGAAG
CTAGACATAGTTGATTGAATCTGCTGCGTTGTGGACATCCGACGACGTTG
TGTCCAATGCTCAGAACAGAAAATAATAGTCTGTTCCTTGTTCACCCCTC
ACCTGTCTCCCTCCTCAACGTTTCCTTTGTCGAACATTGCGTTGTTGGTT
GTGTCTCCCGCCGAATGCGTGGCCGTTAGACCGGACGGCCGACACGGCGT
CTTCGACACCGGGAACCTCCACGGGGGATCGTGCTGGCGGAGGGCAGAAC
GCACGCGTGGAAGATGACGGAGACCACCATGATGTTGCGGTGGCGGTGCC
CAACGTGGAGAAGCTGAACACGGCGGCGGTCCAGCATACGCGCGGGCACA
TTTCCAGGCTGCGTGACATGGTGAATCACATGACATGGGAAAAATTATAG
TACCAATCGGGGCGGGCGGGCGGGCGTAGCAACAAGTCGCTGGGTCTGCA
GCAAAAGGGTTGACCCGGACAAAGGTATCAAAACCAAATTACGCAATGGG
GTTGACTGGGCATCGGCTGGGACTACGCACTGAACTTAACAGAACCAAAG
CTCATCTGCCGAGTAAACAAGCGCTTCCGTTCCGTAGCCGTATAATGCAC
ACTATTAATCGGGTGATGGTAACAGGTCTGTGGCGCCAAAGAGGTGGATT
GTCCGCGTCTGGCGTGGATCTACCCGGACGATAGCGGCAAGGCACGCAGC
GTCGACATCACGACAGACGAGTGGCTAAAGAAGCCGATAAGACTGGTCTT
CTTGTGTCCGATTTCCATGAAGCCTGGCTGGTGAGAGTTCAACCAGCGAG
TGTGTCCCCTCGCTATTACCCCTCGCCCTTGTGCCAAATTATTCTTCCAT
ACGACCAGGTGGCTCCAAGCCTCTGCCTCACACGATAAATCATGTCACCA
AGCCCCAGGAAGATTCAATCAACCTCACCCCCCTCCTTGGTGTCGCGTGC
TCCAAACATGTGCCGGTGACGGATACCTCCTCCTAGGTGTGGCCAGGATG
GCAGGGGATACAAGGTGAGTTTGCCTCGTGGGTGGGGCTCCAAGATCGGC
ATGGCCCTGAAGATCGGGGTGGTGGTCGTAGCGGCCGCATCCGACGCAGA
TGAAGTTGCCGGTCTACCCCTGCCGCCGGCGTCAGCCGTTTCCTCATGGG
GGGAGGATGGTGAAGGAGAAAAATCCTTGACCCAAATGCAGGGGGACCTC
GTGAACGCAGCATTCGACGGGCTTGCCGGCGCCGTGCCCGACAAGTCGAA
TGACCTCATCGACTCGACCTTCATGGACGCTGAAACCGAGGTGAGGGGGT
CGCCTCAAGCAAAGGAGACGCGCAAATGAGTGGGAGGCTTCTTGCGCATG
TCTTTGTAAGTTTGTTTCTCCGTGTGTCTGCATGTGGTGAACGTTGATCG
GCTCTGCCTTCGATAAACGTTAGGCAAGTTCGAGACACGTGAATGATAAG
AATACCGGTGTTGTACGTCGCAAACCGCACGGAATTACTAGTGCTGCACT
AGGAGGATTGTATTCCTAGCTGAACCTTGTGCGCCCATTGTCCCTTGAAA
ACAACATGCTGATTACGGCAGACATCAGCTTCTCCCGCAGCGGCGCAGCT
GTGCAAAGAAGTGAAACAGTCGTACAAGAACCTGAGCTCCTTGCTTAACC
AGAAATACGACAAAGGTGAGGAGAAAAACGCCCAAGCAGAACCATGCTTT
ACTGTGATTGACGTTTCGTTGTGGGTTCTTCTGTACTTCATCGATGGGCG
TTTTGACGCGGCGGCTACTGCAGATGGTCGACAGGTGTACCACACACACC
GACGACACAGCAACATGCAGTCCTACAGTGTACGATCGTGTTGTAACCCC
TCCCCCGCACTGGATTAAGCACTCTCTCGGTTTGCAAGGTTCATACGGGG
ACAGGTGGATCTTCCTGACAATGTTTAACGGTGTTGGGTGTTGCGTTACA
TTCAGCACGGTAGCACATGTACACCAACCAATCGCGAAGTGGTACACTAC
GGTGAGCAGCATATATTGACTACTAGCGTCTTGCCACTAACGATGCCGAA
AATGCAGTGACCTCCGAAACATTGGATGCATAACAATGCGGGCTGGTCAA
ATTGTGGAAATCATAGGAAATGAACGTCGACAACATGGAAATCGACCCCC
CCCCCCCCCTTAAAGTCGTTGTTTTGCCTTCTCCATCCCTCTATTTAGCT
ATTTAGTACAAGATCGGCAAACGAGATACTCCCCCGCCCACGTATGTGTT
ACCCTACAAACGCAGGCCTAAAAAATACAGGCCTTGAAAAGGTGACCTAT
GCGGGGTCAGGGGGGAATTCTCCCATCACGGAGTGGGTGCACCCTTCCGT
CGCCGAGTTGTTCCGCAGCCAAGGACCCTCGGTATTCGGCTCTGGGGCTC
TGGCAACCGCTGACGCCGATGCTACGCGGGAGGCCGTAAGACGCCACAAA
GAGCAGAACAAGAGGTCCGATGGAGGCAACCGACCAGGGAGCGAAGATGT
GATGAGTACCCTCCGCTTGCTGGAAAAGCAGGTCCTGGCCATGGCTGGGG
GAGGGGCGCGCGGTTCTGGCGGTGCCTGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig730:17833..27011-

>mRNA_E_fasciculatus_S2_contig730.15494.1 ID=mRNA_E_fasciculatus_S2_contig730.15494.1|Name=mRNA_E_fasciculatus_S2_contig730.15494.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2634bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig730:17833..27011- (Ectocarpus fasciculatus EfasUO2)
ATGACAGATGTGGACCTCCAAGTTGCGGTCATGGTTGGCGACCGACGAGC
CGTCAAGAAGTTTATCAGTGGGCACGGCGATCTTGATGAAAAAGATGAGG
ACGGGGCAACGGCGCTGTTCCATGCAGCCTTTTGGACCCACGTGGAGATT
GCGAAGGACCTGATCTCCGCCGGAGCCAACCTGTACGCCAAGAGAAACGA
TGGGTTCACCGCTCTCCACGTGGCTGCTAAGAACAACCAACCTCGCATAA
CCGAAGTTTTGGTTGACGCAATGGACGATTTGGACTTGAAGGAGGAGTTC
GGCGACACCGCTCTTCATTGCGCATACCGCAATAAAGCTACCGAATGTAT
CGAGATACTTCTCGCAGGGGGCGCAAGCTCGGAGGTTCTCAATCACATGG
GGGAAACCCCTAGGCAGTGCGAGGGGACAGGGGTGGACAGGCAGCCAGAC
GGGGAAAACTTCGACGATGACGATGATGACGACGGTCCTCGTGGATCGGG
GGCAGTTTCAGAAACGCCGAGCGCTGGTGATGAAAGCACGGTTGTGGGCG
ACCCCGGAGGTCAAGACCACGACGCTGGATTTTCCTCCGGAAAGAGTCCA
AACAGGCCGCACGACGAAAGATCCGCGGCCGCGAGTAGCAGTCCGAGGAC
GACTCGCAACCGTTCCGGTGCGCACGCGGGTGACACTGGGCGGGCGAAGG
AGAATATGGATTCAACGTCTACGAGGACCCACTTTCGCGTCGCGTACCGG
CCAACCATCAGGGGTGGAGGAACGTGGCACCCGATGACAGCGTACCTTTT
CGAGCCGTCGGCGCACGGCGCGGTACGCAACGCGCACCAAGCTCGCATCG
ACGGCGACCAGCACCACCCCTTCGTGGATTCAGACAACGGCAACGCCGTC
GAGGATTGCGACAAGACCATCCCTCCGGGAACCCAAGTTGTCGTCCGACC
TAGATTCCCGCGGACCTGCTGCGTTAGCCCTGTCAACTCCACGGTGGTGT
GGATGAAGGACGTCCACGCCGTCCCTTTCGAGGTGCGCCCGCCGGCGTCT
ACCAGCAGCGGTACAATCTCCGGCTGCGTGGACTTCTACGTTGGGGCGGT
GCTGATAGGCCAGGCCTACGTCGAGATGGCCGTAGTGAAGCCGAACGACA
GCAGTGGCGCCGCGGACAAGCCTGATGTTCTCGGCCCAGTCGCGAAGGCG
TTCGACGCGATGTACGTCTGCTTCGCTGCCGCCGACAAGCCGCTTCTGCT
ACCGTCCCTCGAATGGTTCAACCGCTTGGGCATCTTTAACATCGTTTGGC
GGCCGGAGGATGGAAACGAGAGGGATACGAAACGCCTAATACGAGAATCG
TCCATCTTCCAGATATGCTGGTCGATGTCTGCCAAGGAGAGTGACCGCGT
CCGGAACGAGGTCAAGTACGCGAGTTCGCTGGCCAAGGCCGGATCATTGG
CTGTCCGAGGCATCTACTGGGACCCGACCATGGATGTGACTTCCATACAA
ACGGCCCAAGGGCTGATGTTTCCCGTCCGGCTGCACAACTCGTTCCTGCT
GGAGGAGGCCTGTTCTTTTATTCTAGACCGGACGGCCGACACGGCGTCTT
CGACACCGGGAACCTCCACGGGGGATCGTGCTGGCGGAGGGCAGAACGCA
CGCGTGGAAGATGACGGAGACCACCATGATGTTGCGGTGGCGGTGCCCAA
CGTGGAGAAGCTGAACACGGCGGCGGTCCAGCATACGCGCGGGCACATTT
CCAGGCTGCGTGACATGGTCTGTGGCGCCAAAGAGGTGGATTGTCCGCGT
CTGGCGTGGATCTACCCGGACGATAGCGGCAAGGCACGCAGCGTCGACAT
CACGACAGACGAGTGGCTAAAGAAGCCGATAAGACTGGTCTTCTTGTGTC
CGATTTCCATGAAGCCTGGCTGGTGTGGCCAGGATGGCAGGGGATACAAG
GTGAGTTTGCCTCGTGGGTGGGGCTCCAAGATCGGCATGGCCCTGAAGAT
CGGGGTGGTGGTCGTAGCGGCCGCATCCGACGCAGATGAAGTTGCCGGTC
TACCCCTGCCGCCGGCGTCAGCCGTTTCCTCATGGGGGGAGGATGGTGAA
GGAGAAAAATCCTTGACCCAAATGCAGGGGGACCTCGTGAACGCAGCATT
CGACGGGCTTGCCGGCGCCGTGCCCGACAAGTCGAATGACCTCATCGACT
CGACCTTCATGGACGCTGAAACCGAGACATCAGCTTCTCCCGCAGCGGCG
CAGCTGTGCAAAGAAGTGAAACAGTCGTACAAGAACCTGAGCTCCTTGCT
TAACCAGAAATACGACAAAGGCCTAAAAAATACAGGCCTTGAAAAGGTGA
CCTATGCGGGGTCAGGGGGGAATTCTCCCATCACGGAGTGGGTGCACCCT
TCCGTCGCCGAGTTGTTCCGCAGCCAAGGACCCTCGGTATTCGGCTCTGG
GGCTCTGGCAACCGCTGACGCCGATGCTACGCGGGAGGCCGTAAGACGCC
ACAAAGAGCAGAACAAGAGGTCCGATGGAGGCAACCGACCAGGGAGCGAA
GATGTGATGAGTACCCTCCGCTTGCTGGAAAAGCAGGTCCTGGCCATGGC
TGGGGGAGGGGCGCGCGGTTCTGGCGGTGCCTGA
back to top