mRNA_E_fasciculatus_S2_contig7297.15485.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7297.15485.1
Unique NamemRNA_E_fasciculatus_S2_contig7297.15485.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7297.15485.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW8_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 5.470e-35
Identity = 108/155 (69.68%), Postives = 118/155 (76.13%), Query Frame = 1 
Query:    7 GANAFAASAGVPGVAPFAGPAIAVPSPAVALAAAXXXXXXXXXXXXXXXXXXXXXXXXNPAAQGVHDPELEAVRLQLERMQSPAATVGTLRRTMQVFDDMKASRRMNGRPNLMTSVGTLVLYSSPTFSRWKLQCRLLSNADAEQSLRDARRSINM 471
            GAN  AASAGV  VAP AGPAIAVP        AXXXXXXXXXXXXXXXXXXXXXXXX   AQGV DPEL+  R QLE MQSP+ATVGTLR T+  F+ MK+ RRMNG+PNL  SV TL LY +P  SRW  QCRLLSNADA Q LR+AR++INM
Sbjct:  283 GANKVAASAGVAAVAPLAGPAIAVPP-------AXXXXXXXXXXXXXXXXXXXXXXXXXXXAQGVPDPELDGFREQLELMQSPSATVGTLRATIASFEAMKSCRRMNGKPNLTNSVATLPLYKAPNISRWAKQCRLLSNADANQELREARKAINM 430
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7297.15485.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized5.470e-3569.68protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7297contigE_fasciculatus_S2_contig7297:6153..7377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size474
Hectar predicted targeting categoryother localisation
Exons3
Cds size474
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842393.500142-CDS-E_fasciculatus_S2_contig7297:6152..62341696842393.500142-CDS-E_fasciculatus_S2_contig7297:6152..6234Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7297 6153..6234 -
1696842393.5114503-CDS-E_fasciculatus_S2_contig7297:6597..67841696842393.5114503-CDS-E_fasciculatus_S2_contig7297:6597..6784Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7297 6598..6784 -
1696842393.5286427-CDS-E_fasciculatus_S2_contig7297:7172..73771696842393.5286427-CDS-E_fasciculatus_S2_contig7297:7172..7377Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7297 7173..7377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7297.15485.1prot_E_fasciculatus_S2_contig7297.15485.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7297 6153..7377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7297.15485.1

>prot_E_fasciculatus_S2_contig7297.15485.1 ID=prot_E_fasciculatus_S2_contig7297.15485.1|Name=mRNA_E_fasciculatus_S2_contig7297.15485.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=158bp
AGGANAFAASAGVPGVAPFAGPAIAVPSPAVALAAAPVVAPPAAPAVPPP
PAAAVAAPANNPAAQGVHDPELEAVRLQLERMQSPAATVGTLRRTMQVFD
DMKASRRMNGRPNLMTSVGTLVLYSSPTFSRWKLQCRLLSNADAEQSLRD
ARRSINM*
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mRNA from alignment at E_fasciculatus_S2_contig7297:6153..7377-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7297.15485.1 ID=mRNA_E_fasciculatus_S2_contig7297.15485.1|Name=mRNA_E_fasciculatus_S2_contig7297.15485.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1225bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7297:6153..7377- (Ectocarpus fasciculatus EfasUO2)
GCTGGTGGTGCGAACGCTTTTGCTGCGTCTGCCGGAGTCCCAGGGGTTGC
GCCTTTTGCTGGTCCGGCGATTGCTGTCCCTTCTCCTGCGGTTGCACTCG
CTGCTGCGCCGGTAGTTGCGCCCCCTGCTGCCCCCGCGGTTCCGCCCCCT
CCTGCCGCGGCGGTTGCGGCCCCTGCAAACAACCCTGCAGCGCAAGGCGT
ACACGGTGAGGATGACATGGTCGGGTTCAAGTGCAGTATTGTCGTGCCTT
GCGAGTTGCCGGCCCAGTAACGATCGCAACGTGTTTTCTAGCATCATATT
CCTATCGGTTCGGGTTTTGTAGCGCGTAGACTTCGTGTACAAAGAAAGCA
TATTGTTGCATCACTCCCCCTCGTGCTTGGTGGGGTTGCGGGAGATACAC
GATGCAGCCCCGTGTGAAACGAAAGACAGGCGATCGACACTACCCAACTA
CAGTAGCTAGCTGCAGGCGGTATTCACAAAGCGAACCTTTTGGCAGTGCA
TCCAGATTATTACTATCCGAGATTATAAATGCTTCACCTCCCGTCACCCG
TGCACTTTTGCCCTCCAACTGGTACCACTTTTTGTGCGACCAGACCCCGA
ACTAGAGGCGGTTCGGCTGCAATTGGAGCGCATGCAGTCCCCGGCGGCGA
CCGTGGGAACCCTGCGCAGAACGATGCAGGTGTTCGACGACATGAAAGCT
TCCCGCAGGATGAACGGGAGGCCGAACCTCATGACCTCCGTCGGTACTCT
AGTCCTGTATTCGTCTCCAACCTTCTCAAGGTAGGCCCTTAAGTACCGAC
GTCATATTTCGTGACTGATAATTTATTGACCCTGGTGTTGTCCCCGAGTT
TCCGCTCTGCAGCCCTCCGCGCCGGGTATTGGCAATTCCATCGGTAGGTG
TGTCTAAACTATTTGGACCCGCGCTAACGGTCTGTCAAACGAAAAAAGTA
AAAACTATCGGGGGCAAAAACGTTTGTCAGGTCTAGACTACATACCTTGT
ACACAAACACCAAGCACATGCATGTACACATTCAGTCTATTCCGCCACCA
AAGAAGTGGGTTCTCATACGCTATACGTATGAACTAAAAACGTTCCTGCA
ACCATAACTCGACCATCCGAAATTATTACCCCGTGCTTTCCAGGTGGAAA
CTGCAGTGCAGGCTGCTGAGCAATGCCGACGCTGAACAAAGCCTCCGGGA
CGCCCGAAGGAGCATCAACATGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7297:6153..7377-

>mRNA_E_fasciculatus_S2_contig7297.15485.1 ID=mRNA_E_fasciculatus_S2_contig7297.15485.1|Name=mRNA_E_fasciculatus_S2_contig7297.15485.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=474bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7297:6153..7377- (Ectocarpus fasciculatus EfasUO2)
GCTGGTGGTGCGAACGCTTTTGCTGCGTCTGCCGGAGTCCCAGGGGTTGC
GCCTTTTGCTGGTCCGGCGATTGCTGTCCCTTCTCCTGCGGTTGCACTCG
CTGCTGCGCCGGTAGTTGCGCCCCCTGCTGCCCCCGCGGTTCCGCCCCCT
CCTGCCGCGGCGGTTGCGGCCCCTGCAAACAACCCTGCAGCGCAAGGCGT
ACACGACCCCGAACTAGAGGCGGTTCGGCTGCAATTGGAGCGCATGCAGT
CCCCGGCGGCGACCGTGGGAACCCTGCGCAGAACGATGCAGGTGTTCGAC
GACATGAAAGCTTCCCGCAGGATGAACGGGAGGCCGAACCTCATGACCTC
CGTCGGTACTCTAGTCCTGTATTCGTCTCCAACCTTCTCAAGGTGGAAAC
TGCAGTGCAGGCTGCTGAGCAATGCCGACGCTGAACAAAGCCTCCGGGAC
GCCCGAAGGAGCATCAACATGTAG
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