mRNA_E_fasciculatus_S2_contig7294.15484.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7294.15484.1
Unique NamemRNA_E_fasciculatus_S2_contig7294.15484.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7294.15484.1 vs.
Match: Catalase (is an enzyme, present in all aerobic cells, that decomposes hydrogen peroxide to molecular n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ30_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 7.950e-62
Identity = 102/112 (91.07%), Postives = 106/112 (94.64%), Query Frame = 1
Query:    1 VKTPGTFAFGSSLLAPSPKLTVQGLGNISLPLSNEDVGVLRGAAERAPFGHGAETKVDESVRSAWQIDGSLIGLSNEFAQAVGKKHALHAAEKLGLRAKALGVEARLYKLVM 336
            V+TPGTFAFGSSLLAPSPKLTVQGLG+ISLPLSNE VG LRGAAERAPFGHG ETKVDESVR AWQID SL+GLSNEFAQAVGKK+ALHAA KLGLRAKALGVEARLYKLVM
Sbjct:   33 VETPGTFAFGSSLLAPSPKLTVQGLGSISLPLSNEHVGALRGAAERAPFGHGTETKVDESVRRAWQIDASLLGLSNEFAQAVGKKYALHAAGKLGLRAKALGVEARLYKLVM 144          
BLAST of mRNA_E_fasciculatus_S2_contig7294.15484.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ33_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.080e-45
Identity = 79/102 (77.45%), Postives = 87/102 (85.29%), Query Frame = 1
Query:    1 VKTPGTFAFGSSLLAPSPKLTVQGLGNISLPLSNEDVGVLRGAAERAPFGHGAETKVDESVRSAWQIDGSLIGLSNEFAQAVGKKHALHAAEKLGLRAKALG 306
            VKTP +FAFGSSLLAPSPKLTVQGLG+ISLPLSNEDVG LRGAAERAPFGHGAETKVDESVR AWQIDGSL+GLSNEFA + G++  L    K G  ++ LG
Sbjct:   34 VKTPESFAFGSSLLAPSPKLTVQGLGSISLPLSNEDVGTLRGAAERAPFGHGAETKVDESVRRAWQIDGSLLGLSNEFAPSRGEEVRLARCGKAGAESQGLG 135          
BLAST of mRNA_E_fasciculatus_S2_contig7294.15484.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP4_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 4.220e-26
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 1
Query:  163 TKVDESVRSAWQIDGSLIGLSNEFAQAVGKKHALHAAEKLGLRAKALGVEARLYKLVM 336
            TKVDES+R AWQIDGSL+GLSNE AQAVGKK+ALHAAE+LGLR KALGVEARLYKLV+
Sbjct:    5 TKVDESLRRAWQIDGSLLGLSNEVAQAVGKKYALHAAEELGLRTKALGVEARLYKLVI 62          
BLAST of mRNA_E_fasciculatus_S2_contig7294.15484.1 vs.
Match: Uncharacterized (protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YA66_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 3.090e-15
Identity = 53/113 (46.90%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    1 VKTPGTFAFGSSLLAPSPKLTVQGLGNISLPLSNEDVGVLRGAAERAPFGHGAETKVDESVRSAWQIDGSLIGLSNEFAQAVGKKHALHAAEKLGLRAK-ALGVEARLYKLVM 336
            V+T G+FA    L A  P+L VQGLG IS+PLS +D   L    + APFG G ET  D+SVR   Q+D S + L   + Q +     L A + LG++   ALGVEARLYKL+M
Sbjct:   19 VQTCGSFAATGLLAAKQPRLAVQGLGTISVPLSRKDAASLLRVGKIAPFGFGNETVQDQSVRRGKQLDASRVRLHG-WEQTLQHITQL-AVDALGIKGPDALGVEARLYKLLM 129          
BLAST of mRNA_E_fasciculatus_S2_contig7294.15484.1 vs.
Match: 2OG-FeII_Oxy_3 (domain-containing protein n=1 Tax=Gymnopus confluens TaxID=206315 RepID=A0A8H5HWZ0_9AGAR)

HSP 1 Score: 75.9 bits (185), Expect = 1.050e-13
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   16 TFAFGSSL-LAPSPKLTVQGLGNISLPLSNEDVGVLRGAAERAPFGHGAETKVDESVRSAWQIDGSLIGLSNEFAQAVGKKHALHA-AEKLGLRAKALGVEARLYKLVM 336
            +FAFG++   AP+P LT++G+G I LPLS  D  ++   A +APFGH  ET +D SVR  ++ID S +  SN    A      L     KLG +AK   +E  LYKL++
Sbjct:   53 SFAFGTTCPQAPNPVLTIEGIGQIGLPLSERDANIIIQHANQAPFGHNHETVIDTSVRDTFEIDASRVRFSNPLFNAWLLSELLCTITTKLGTQAKDTSIE--LYKLLL 159          
BLAST of mRNA_E_fasciculatus_S2_contig7294.15484.1 vs.
Match: 2OG-FeII_Oxy_3 (domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RNK9_SELML)

HSP 1 Score: 74.3 bits (181), Expect = 3.610e-13
Identity = 41/104 (39.42%), Postives = 63/104 (60.58%), Query Frame = 1
Query:   31 SSLLAPSPKLTVQGLGNISLPLSNEDVGVLRGAAERAPFGHGAETKVDESVRSAWQIDGSLIGLSN--EFAQAVGKKHALHAAEKLGLRAKALGVEARLYKLVM 336
            +S  A    L V+G G+++LPLSN+    L+  +++AP+G G ET +D  VR AWQ++ S +      +F   V    A+ A E LG+ A ALG++ RLYKL++
Sbjct:   27 ASKFAMPASLRVEGAGDLALPLSNDGFLKLKAVSQQAPYGKGEETLLDTDVRRAWQVEASKVSCPQTPDFFSKVVLDMAVPAMEVLGIDAAALGLDVRLYKLLL 130          
BLAST of mRNA_E_fasciculatus_S2_contig7294.15484.1 vs.
Match: 2OG-FeII_Oxy_3 (domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RNN1_SELML)

HSP 1 Score: 73.9 bits (180), Expect = 4.920e-13
Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = 1
Query:   31 SSLLAPSPKLTVQGLGNISLPLSNEDVGVLRGAAERAPFGHGAETKVDESVRSAWQIDGSLIGLSN--EFAQAVGKKHALHAAEKLGLRAKALGVEARLYKLVM 336
            +S  A    L V+G G+++LPLS +    L+  +++AP+G G ET +D  VR AWQ+D S +      +F   V    A+ A E++G+ A ALG++ RLYKL++
Sbjct:   37 ASKFAMPASLRVEGAGDLALPLSGDGFLKLKAVSQQAPYGKGEETLLDTDVRRAWQVDASKVSCPQIPDFFSKVVLDMAVPAMEEMGIDAAALGLDVRLYKLLL 140          
BLAST of mRNA_E_fasciculatus_S2_contig7294.15484.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A674_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 9.480e-13
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 1
Query:    1 VKTPGTFAFGSSLLAPS--------PKLTVQGLGNISLPLSNEDVGVLRGAAERAPFGHGAETKVDESVRSAWQIDGSLIGLSNEFAQAVGKKHALHAAEKLGL-RAKALGVEARLYKLVM 336
            +K  GTFA+ S  +A          P+L+V+G+G +SLPL       L  A   APFG G  T +D +VR A Q+D SL+ +++ +   +       AAE LG+  A ALG++ARLYKL++
Sbjct:  934 IKAAGTFAWSSGDVAGEEDGESWELPELSVEGVGPLSLPLDATQAAALLAAGTPAPFGRGPHTVLDPAVRRATQLDASLVSIASTWTDLLSDITE-DAAEALGIVDAGALGIQARLYKLLL 1053          
BLAST of mRNA_E_fasciculatus_S2_contig7294.15484.1 vs.
Match: uncharacterized (protein n=2 Tax=Bacidia gigantensis TaxID=2732470 RepID=UPI001D04B3FA)

HSP 1 Score: 72.8 bits (177), Expect = 1.250e-12
Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    1 VKTPGTFA-FGSSLLAPSPKLTVQGLGNISLPLSNEDVGVLRGAAERAPFGHGAETKVDESVRSAWQIDGSLIGLSNEFAQAVGKKHALHAAEKLGLRAKALGVEARLYKLVM 336
            V + G+FA FG      +P +++  LG I LPLS ED   +  A+ +APFG G +T VDES+R  WQID   I L N+  Q    +   H   +LG+      V A LYK+++
Sbjct:   34 VHSTGSFATFGVVERFANPGISIDPLGLIRLPLSEEDAKAIVRASNKAPFGKGNKTLVDESIRKTWQIDADKIQLLNDGWQECLNRIVEHVLGELGVACALTNVRADLYKMLL 146          
BLAST of mRNA_E_fasciculatus_S2_contig7294.15484.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QMS1_SELML)

HSP 1 Score: 72.8 bits (177), Expect = 1.280e-12
Identity = 38/95 (40.00%), Postives = 60/95 (63.16%), Query Frame = 1
Query:   58 LTVQGLGNISLPLSNEDVGVLRGAAERAPFGHGAETKVDESVRSAWQIDGSLIGLSN--EFAQAVGKKHALHAAEKLGLRAKALGVEARLYKLVM 336
            + V+G G++ LPLSN+    L+  +++AP+G G ET +D  VR AWQ++ S +      +F   V    A+ A E+LG+ A ALG++ RLYKL++
Sbjct:  489 MQVEGAGDLPLPLSNDGFLKLKAVSQQAPYGKGEETLLDTDVRRAWQVEASKVSCPQIPDFFSKVVLDMAVPAMEELGIDAGALGLDVRLYKLLL 583          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7294.15484.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Catalase7.950e-6291.07is an enzyme, present in all aerobic cells, that d... [more]
Uncharacterized1.080e-4577.45protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.220e-2686.21protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.090e-1546.90protein n=1 Tax=Edaphochlamys debaryana TaxID=4728... [more]
2OG-FeII_Oxy_31.050e-1342.20domain-containing protein n=1 Tax=Gymnopus conflue... [more]
2OG-FeII_Oxy_33.610e-1339.42domain-containing protein n=2 Tax=Selaginella moel... [more]
2OG-FeII_Oxy_34.920e-1338.46domain-containing protein n=2 Tax=Selaginella moel... [more]
Fe2OG9.480e-1338.84dioxygenase domain-containing protein n=1 Tax=Tetr... [more]
uncharacterized1.250e-1238.94protein n=2 Tax=Bacidia gigantensis TaxID=2732470 ... [more]
Fe2OG1.280e-1240.00dioxygenase domain-containing protein n=2 Tax=Sela... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7294contigE_fasciculatus_S2_contig7294:3..341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start0
Seed ortholog score75.1
Seed ortholog evalue2.3e-11
Seed eggNOG ortholog88036.EFJ10937
Model size339
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2C14X@1,2S2NY@2759,37V9W@33090
Cds size339
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842393.4670398-CDS-E_fasciculatus_S2_contig7294:2..3411696842393.4670398-CDS-E_fasciculatus_S2_contig7294:2..341Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7294 3..341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7294.15484.1prot_E_fasciculatus_S2_contig7294.15484.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7294 3..341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7294.15484.1

>prot_E_fasciculatus_S2_contig7294.15484.1 ID=prot_E_fasciculatus_S2_contig7294.15484.1|Name=mRNA_E_fasciculatus_S2_contig7294.15484.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=113bp
VKTPGTFAFGSSLLAPSPKLTVQGLGNISLPLSNEDVGVLRGAAERAPFG
HGAETKVDESVRSAWQIDGSLIGLSNEFAQAVGKKHALHAAEKLGLRAKA
LGVEARLYKLVM*
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mRNA from alignment at E_fasciculatus_S2_contig7294:3..341+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7294.15484.1 ID=mRNA_E_fasciculatus_S2_contig7294.15484.1|Name=mRNA_E_fasciculatus_S2_contig7294.15484.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=339bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7294:3..341+ (Ectocarpus fasciculatus EfasUO2)
GTCAAGACTCCCGGCACCTTCGCGTTTGGCTCTAGCCTGCTCGCTCCTTC TCCAAAGCTCACTGTGCAAGGTCTCGGGAACATCTCCCTGCCCCTGAGCA ACGAAGACGTGGGCGTGCTGAGGGGGGCCGCCGAGCGTGCACCGTTCGGT CATGGAGCAGAGACGAAGGTGGACGAGAGCGTGCGTTCGGCGTGGCAGAT CGACGGCTCCCTCATCGGGCTCTCGAACGAGTTTGCTCAAGCCGTGGGGA AGAAGCACGCTTTGCACGCCGCGGAAAAGCTAGGGCTGAGGGCCAAGGCC TTGGGCGTGGAGGCCAGGCTGTACAAGCTCGTGATGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7294:3..341+

>mRNA_E_fasciculatus_S2_contig7294.15484.1 ID=mRNA_E_fasciculatus_S2_contig7294.15484.1|Name=mRNA_E_fasciculatus_S2_contig7294.15484.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=339bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7294:3..341+ (Ectocarpus fasciculatus EfasUO2)
GTCAAGACTCCCGGCACCTTCGCGTTTGGCTCTAGCCTGCTCGCTCCTTC
TCCAAAGCTCACTGTGCAAGGTCTCGGGAACATCTCCCTGCCCCTGAGCA
ACGAAGACGTGGGCGTGCTGAGGGGGGCCGCCGAGCGTGCACCGTTCGGT
CATGGAGCAGAGACGAAGGTGGACGAGAGCGTGCGTTCGGCGTGGCAGAT
CGACGGCTCCCTCATCGGGCTCTCGAACGAGTTTGCTCAAGCCGTGGGGA
AGAAGCACGCTTTGCACGCCGCGGAAAAGCTAGGGCTGAGGGCCAAGGCC
TTGGGCGTGGAGGCCAGGCTGTACAAGCTCGTGATGTGA
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