mRNA_E_fasciculatus_S2_contig729.15483.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig729.15483.1
Unique NamemRNA_E_fasciculatus_S2_contig729.15483.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig729.15483.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKL5_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 2.010e-102
Identity = 151/176 (85.80%), Postives = 163/176 (92.61%), Query Frame = 1 
Query:    1 MHDGGNMWDESPQNLWQEKGLMSTLRTWTGLVAVGYLLGLFACLVAGVSGPGLFTAKDAVFSTTEGTATAATNYTFDISQYERAHQSLYLAMRLNIPIQLQNSMELNDQTSYETEGSYSVSIYGSPQSTLGRGGAACPYGCVSCPKGNESLGLTCDLLSEDATGGESVACEGGEEW 528
            M++  N+WDE+P NLWQEKGLMSTLRTWTGLVAVGY LGL ACL AGV+GPGLFT+K+AVFST EGTATAATNY FDISQYER HQS+YLAMRLNIPIQLQNSMELNDQTSYETEGSY +S+YGSPQSTLGRGG  CPYGCVSCP+G+E LGLTCDLLSEDATGGESVACEGGEEW
Sbjct:    1 MYNDRNLWDENPGNLWQEKGLMSTLRTWTGLVAVGYTLGLLACLAAGVTGPGLFTSKNAVFSTIEGTATAATNYAFDISQYERTHQSIYLAMRLNIPIQLQNSMELNDQTSYETEGSYRISLYGSPQSTLGRGGDVCPYGCVSCPEGDEGLGLTCDLLSEDATGGESVACEGGEEW 176
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig729.15483.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.010e-10285.80protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKL5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig729contigE_fasciculatus_S2_contig729:21782..28013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size531
Hectar predicted targeting categorysignal anchor
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_003420.3
Cds size531
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842393.3952472-CDS-E_fasciculatus_S2_contig729:21781..219201696842393.3952472-CDS-E_fasciculatus_S2_contig729:21781..21920Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig729 21782..21920 +
1696842393.4066384-CDS-E_fasciculatus_S2_contig729:24979..250861696842393.4066384-CDS-E_fasciculatus_S2_contig729:24979..25086Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig729 24980..25086 +
1696842393.4182684-CDS-E_fasciculatus_S2_contig729:25754..258371696842393.4182684-CDS-E_fasciculatus_S2_contig729:25754..25837Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig729 25755..25837 +
1696842393.4280684-CDS-E_fasciculatus_S2_contig729:26843..269011696842393.4280684-CDS-E_fasciculatus_S2_contig729:26843..26901Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig729 26844..26901 +
1696842393.4411237-CDS-E_fasciculatus_S2_contig729:27869..280131696842393.4411237-CDS-E_fasciculatus_S2_contig729:27869..28013Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig729 27870..28013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig729.15483.1prot_E_fasciculatus_S2_contig729.15483.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig729 21782..28013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig729.15483.1

>prot_E_fasciculatus_S2_contig729.15483.1 ID=prot_E_fasciculatus_S2_contig729.15483.1|Name=mRNA_E_fasciculatus_S2_contig729.15483.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=177bp
MHDGGNMWDESPQNLWQEKGLMSTLRTWTGLVAVGYLLGLFACLVAGVSG
PGLFTAKDAVFSTTEGTATAATNYTFDISQYERAHQSLYLAMRLNIPIQL
QNSMELNDQTSYETEGSYSVSIYGSPQSTLGRGGAACPYGCVSCPKGNES
LGLTCDLLSEDATGGESVACEGGEEW*
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mRNA from alignment at E_fasciculatus_S2_contig729:21782..28013+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig729.15483.1 ID=mRNA_E_fasciculatus_S2_contig729.15483.1|Name=mRNA_E_fasciculatus_S2_contig729.15483.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6232bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig729:21782..28013+ (Ectocarpus fasciculatus EfasUO2)
ATGCACGATGGCGGCAATATGTGGGACGAGAGCCCACAGAACTTGTGGCA
GGAGAAGGGCTTGATGTCGACGCTGCGAACCTGGACGGGGTTGGTCGCGG
TCGGGTATCTGCTTGGACTATTTGCCTGCCTCGTAGCAGGTGAGAGGTAT
TCTGAGAAAAAGAAGCTGGCTGTGAAGTAGAGATGATGGATGATGGCCTC
TCTCGACCTCTGTAGACATGCATTTATGTTCTCGCTGGCTGCATGCTATG
CATGTATGAAGCCATCCTCCTACACGGCGGTCTATCTTGATGGTAGCGAT
GATCTCTCGACAAGTTCCAACCCTGAGATACGTGCTGTGGATCATGTGTG
TGCTTGTGTTGTGTTTGTCGTGCCTCTCCGTTGAAAACGATTCCGCATGG
GGTATTTCCGCCCGCCATCATAGCCATCACACATCATCACACGTGGCGTC
TCGTGTCTGCATCTATGCTGCGTTACACACGAAAAAAACCGGAGGCTTGC
TGTGTACGCTTTGCCGTTCTTCCCCCCTCTGCGAGTCTCTCCCGGCGGCA
GAGAACTGCTCCGTCTGTTCTTCACCTTCCGGAACACACTCCCGTAGGTT
TTTTGTGTACATGCATGCCCACATGCCCGCAGGTTGTTACCGTTTTTGTG
TGCATGCCCGAAGGTTTGTCTCACAGGGAAGTAATTCGAAGTGCTCTTGT
CCCTCTCTCCTCTTTTGTTTCGCCGCACGCACACCCCACAACCCTCCGAG
TAGCATTATGTGATGTTGCGGGAACGTGATGGCCATGGTCACTTTTGCAC
GAAGACAGCAGCGTCTGTCTTGCCTTCCCTCGCGCCTGGCTGTTTTTTTT
TCCCGTCAAATCAAGGTCAAATCAGAGATTATATCTATCGTTGGGGCATA
CGGCCACGAGCAAACCCGAACAAATTTACCGAAATCCGACCGCCATACAC
ATTCATTCGCATAGACTATGTATCTTGTACGAAGTGTGGAGTGCCGACAC
AAGCAGTTGGTTGATGCGAGGATGATGCTCCCAAGTACGCATGCACGAGG
CGGAGAGAGGGCACCCCCCCTAGACCAACTTTCAGAGCTCGATTGATCCA
CGACCAAAGGGGTGGGTCGCGGAAAGAGCCCGAAACTTGTACAGTACGGA
AAGTCCTCCACGAGATGTTTCAAAGACCATACATTGTAACAATCTTCGGT
GTTCGCGCAAAAAGCTTTACGGAGCAATCGGGCTTTGAAAATCGATCACG
GGGGGGCGGTGCCTCTTTACGGCGAGTGCACCTCTCTACTCTCTACTCTC
TACTACATACACCAGTCAAACCACCACCCTTTTTTTAGATGGACACCCCC
TCGGCGAAGGACACAGGTTAGTCTGTGAAGCAGGTGTAATAGGGAAGAAT
CTCATACCCCCCGTCGTTCAGCTGCTTGCTCCTAGGAAAACTACCGAAGA
AGCAGCGAGCGGTCTGCTGCCTTGTGTATGTGGGGACATCAGGATGATGA
TGAATAAATCCATAAAATCCCTCTCGCCTACTGTTGCTGGCGGCTAGTCT
GGCGGTCGTACACGTTCCACCATGATGTCATAGAAAAATCAACATGCTCG
ACGATATCTACAGACGCCAATATCTTAACTACCCCTCGCATCTTGCGATT
ATTGCGCAGCAGTCAGCATTCAGCTTGTTAGGCGTTGTGTTGGCGACCAT
TCCATGCCCCGATGTGTTGGTTCACCAAGGTTCACGTACGAAATTTGGGA
TACGTACGCCCGCCCCCCCGCCCCCCCCGGGCAGGGGGAAAATAAAAAAG
TTGAAAAGTTGAAGTTTCCAAAGTTTCCATGAATCACCAAGAAGATATGT
ACGAGCCAATAGGACAGCGGTTGTGACCTTCCGAACGTTAGCGTTGTGCG
TCGACAACACCGATCACAACAGTAGGTCGTGCTACGTTATACCCCGCGAC
GAAAAGCTTTTATGTAGTCGGGCGCATGTAGGCGCGATCACGAGTGCACC
CACGACCGAACTGCTATTTTACTATAGGAGGAGCATTCCTTGACAACTAC
TGTAGAGGCTTCTCCAGAGGATGTCTGGGGTGTGCATGAGAAGCTTCCGA
AGGCAAGCCTGGGGGTCGCGGGGTGATGTCCGCCACGTCTCGGGGGTCCC
CAAGTAAGCCCACATGACGTTTGCACCCACAAAGACGAAGCAGCAGCAGC
TTCAGCGCAAGCGTCAGCTTGTAACCGGGGATCTTCGGTACATGTCCCCG
CCTCAGCCAAAACGCCTAAACACAAAACCAGGGGGATCTCTGTAGAAATT
TCCCTTCCCCTCCCCCCCACGGGCCCAGATTTTCGATTCGTGGGTTTTTA
CGCGTGTTGGTTGTTTTTACGCGCTTACCCTTGACTCAAGACACGTTTTT
GAGAAGCATCAGCGGCACGATCCAAAGGCACGGAGGCGGTCACGTGATTC
ACAAACGCACAGCTTTGGGAAATAGTTCTGCATACAAATTTAGTGTTCCA
TCAGTAGAGAGAGATTATTCAGATCGCGCTAATGACTTCTCTTTTGTGTA
GGCCGGGGCACGAACGAAGTGTGTGTGTGTGCGAGACACCGTGCACTGCC
CGACTGCAGCGGCGGCAATTCAATCAATCTGACCTTGCCGGCAGTGACCG
TGCCGGCAGTTCACATTCCTCGGTGACCATTGGGACCGCGGAGATTTAGA
TACATGAGCATTTTGCGGCACTGGGCACACAAAAAAACTCTCATGTTTTT
TTGGACAACCAACAATTCATTGGTCTTCTCGCCAACTTCATTCGTACGTA
TGTCGATCAGTAGCCTCCAACTATCCGTGTATATGAGTCCTGGGTCGTTA
GACGGTTCTATAAGGAGGCAACATCCGTAGTTGGGGTGGGAGAAGGGGGG
CGGGGGGCGGCCAACATCAACCATTATTTCCTGCAAGCAGTTACAAATAC
AAGTTGAGGTTTTTGAGCTCATGTTCCGGCAACTCTTTTTTTTTTCACGC
TGACGTGTTGTCATGCACCATCGTTTTTCTTTGGCCACAGGATACTGAGA
GTATCCCGCTATTGCAGTAGCTCGTTATTTTATTTTGTTTCCGTTCGTCG
ACTCATAAACAACCTTACGTTCACGTGTGTAGATTTCATGATGTCACGTG
CATGCTTCGAAACCGTTCTTGATTCTCATTCGGTTTGTTGTTCCGCAGGG
GTAAGTGGTCCCGGGCTGTTCACTGCGAAGGATGCCGTCTTCTCGACAAC
GGAGGGAACCGCGACCGCAGCGACGAATTACACCTTCGATATCTCGCAAT
ACGAGGTAAATTGTCCGCGACAACAGTAAGGACTCGAACCTCTCTCGTTG
TCGTTCTATATTTAGCTTCGAGTTTTTCCTGCGGAAAGTGTATGTGGTGT
GTGTAAACGCTCTTTCGGCACCGGTGTCATTCGTGGGTGCGCGGTTACTC
GCAGCGCGTTCGTCCGTGCCTATTATCCTGCGGTGCGGGTTCCACTTTGA
CGATGGAGATGAACAATACGCGCAACAGCAACGCGGCACGTTACAAGGAA
ACTCGCGCGAGAAAGGGACTGACGGCTCGATCGAAGAACTCGAGTACCAC
TGCTGTACAGTAAGGTCTCCGACGTTACGTCGGGCCATTGTTTCTTCTTG
CGTTCGACCATCGTCTCTCCTTTTTAACGTGTATACCGACAACGGATCTG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCGCTTCGTGGTGCTCTCGTCGGT
TTTGTTTTTTTTTTGCTNNNNNNNNNNAGGTTCCCGCCCTTTCTTTGGGG
GTTTTTTTTTTTTTGTTTTCTACCCTCCCTCTCCCTTTTTTATTTTTTTA
CCCCCAACGGATTCCCCCCCCCCCCCCCCCCCCCCCGGCGCGCTTGTTGG
TCATCTGGCCTGGTTTGTTTTTGCTTTACGTGCCTGCCTATAATGGGATA
CGATTCCAAACGCGAACGCGCAGAGGGCGCACCAGAGCCTCTACCTCGCT
ATGAGGCTCAACATCCCCATCCAGCTGCAGAACTCAATGGAGCTGAACGA
CCAAACGTGAGCCAGCTTTAAGAGCATCGTTTTTTGTCTACTCTTTGACG
GAAACAGGGGGGCAAGGGCGAGAGGAGAGAGAGAAAAACAAGGACAGAGA
AAAGGTAGAGACAGAAGACATGTATAGAGGGGGGGGGACGGGGGGGAGAG
AGAGATCGAGAGAGACAAGCAGACAGACAAGGGGGGGACAGGCAGGCAGG
CGGGCAGACGGCGCCATTGAGGGAGACGTGGCGTAAGGGGCGCCCGATGC
GGTCAGTGGTGTTTACACCGCCGACCTTCTCTCGGAAGATCATATATTTT
TTGTACAGACGGCAGGGTTGTGCTCAAGTACAACCAAGCGCCATTGTGCG
TTGACGTTGGCAGCTTCGTTTCGTTTGTGGTACATCAGTGACGGCGCCTA
GCGTGCGACATGCCTAAACTACATGTGGTTTTGCCACCGTAACCAGTCCG
AAAGAACCGCACGCGCGCCCGGCGTAGCAGCCTCTTTGCTTGCTGTTGGT
TAGGTTCTCTCGGGACTGCTGTCAGCAACGGTCAAAAATAGTTTTTTGGT
ACCATACCTTTTTACGGTCGAGGACCAGGGGTCCGCGGCATTTTTTGTTG
TTTGTTCTGTGTTTTTTGGAGGATTCGAGAGGTGGCCGACGCCCCCCCGT
CTCTCATTTTCTACCCACCGCAGGCTGGCGTTGGGGTCATAAGCCAGTAC
ACGGATTTCGTTCCGAGGGGTTCGCCCGACGTTGCGTAGTACAAAGCGGT
CAGATGCCCGGGCCTCTCGATCCACTGCGCTGTCTCTCTTCTTCTTGGCA
GACACCCCACGATGAGCTAGCTCGCCACGACCTAGAGACCCGCGTCGCAC
CCTTCTCAACAAACGCCGGAAAACTTGCATCGCCTTACGTGAATCAACGT
TGCTACTCGCTGCACTGTAGCTGCCGCCAATGGAGACGATGGAAATTGCG
TGCGTGCGTATGTGTGTGTGTGTGTGCTTACTTTTCGTGCGCGTCGCGTC
GTGCCCTTGTAGGAGCTACGAAACCGAGGGAAGCTACAGCGTCTCGATCT
ACGGCTCACCGCAGTCCACGGTAAGTGAGCATCCCCCCCCCCTTCCTCCC
CCCATCTCGTTTTGCGAAATAGAGCCACGACCCTCCCACCCCCCCCGGGT
CACCGAGCTTCGCGTAGAGAGAGAGTGGGGTTAGTCTTACGGCGAAGAGA
ACGCCACAAAGTTGAAGGTTCTGCGCAGAAAGAAGAGGCAGTGGTGATTG
GTCGGCAAGAGCAGGAGTCCTGGCAGTCAAATAGCGAAACCTCCCGCTGC
CGCCCCCCCCCGCGCTGTACAGCCTAAGCCTGTTGTAAATGCTGTCCTGC
TGTTTTTCTGGCGCATATTGTAGCGCGTTGTGTTGTTGTGCCTACGGGTG
CAGGGCAGGGGGGGAGGGGGGGGTCGTCGTTGTCGTTGTAGAAGTAAGGC
ACCCGCACTCAGCAGCTTGAAATAAAAAGTATGACGAAAAAAATGGCGTC
CCCTATCGACGGGCTAGGGCTAGATCTTCGTCAATCCGTCAACGAAGGGC
ACCCGTTCCCAAAAATAAAACGCTCGGAAGGCGGATAATGTTACCCTATC
CGGCCAGTCACACGCGGGCGCAGGGAAGACAAACAGAGAGCACGCATAGT
AGGCAGGCGGCAGGTAGTAGTCTCTCGTCGCGTTTTTTTTGTTCTCCGTT
TCTCATCGCTTCGCGGCTGTTGTAAGCAAGGAGCCAACAAACCTACCTGC
TGTCTGTCGTTTCTTGAAAGACGGCGAAGGAACCGAACTACTAACAAACA
TACGACGCAATCGGTAGTCTTTCTGTGTGTTTCTGTATAAATCCGATAAA
TGAACCAATCGAGTAATAGATAATAACATGTGTTGGGATACAAAATGTGA
GTAATGAGAAGCACATCGCTCTTCCGCCGCTCCTGATGGCTAGCCGTGCT
GCGTTGCTCTCTTTCTCTTTTGTTCCTGGGCGTGTGCCTGCCGCCGGACC
ATCCATTTTTTCTTCCCCTCCCCCCCTTTTTTTTTAAGCTCGGCCGCGGG
GGTGCAGCCTGTCCTTACGGCTGCGTGTCGTGTCCTAAGGGAAACGAGAG
TCTCGGGTTGACGTGCGACTTGCTCTCCGAGGATGCGACGGGAGGGGAGT
CTGTCGCTTGCGAGGGCGGAGAAGAATGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig729:21782..28013+

>mRNA_E_fasciculatus_S2_contig729.15483.1 ID=mRNA_E_fasciculatus_S2_contig729.15483.1|Name=mRNA_E_fasciculatus_S2_contig729.15483.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=531bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig729:21782..28013+ (Ectocarpus fasciculatus EfasUO2)
ATGCACGATGGCGGCAATATGTGGGACGAGAGCCCACAGAACTTGTGGCA
GGAGAAGGGCTTGATGTCGACGCTGCGAACCTGGACGGGGTTGGTCGCGG
TCGGGTATCTGCTTGGACTATTTGCCTGCCTCGTAGCAGGGGTAAGTGGT
CCCGGGCTGTTCACTGCGAAGGATGCCGTCTTCTCGACAACGGAGGGAAC
CGCGACCGCAGCGACGAATTACACCTTCGATATCTCGCAATACGAGAGGG
CGCACCAGAGCCTCTACCTCGCTATGAGGCTCAACATCCCCATCCAGCTG
CAGAACTCAATGGAGCTGAACGACCAAACGAGCTACGAAACCGAGGGAAG
CTACAGCGTCTCGATCTACGGCTCACCGCAGTCCACGCTCGGCCGCGGGG
GTGCAGCCTGTCCTTACGGCTGCGTGTCGTGTCCTAAGGGAAACGAGAGT
CTCGGGTTGACGTGCGACTTGCTCTCCGAGGATGCGACGGGAGGGGAGTC
TGTCGCTTGCGAGGGCGGAGAAGAATGGTGA
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