mRNA_E_fasciculatus_S2_contig7288.15480.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: USP (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJN5_9PHAE) HSP 1 Score: 553 bits (1424), Expect = 1.670e-185 Identity = 266/282 (94.33%), Postives = 274/282 (97.16%), Query Frame = 1
Query: 1 GSQTPRANGGEGAGSRVGVAGGVDDLARLAEKKIGLPAPGKELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 846
G Q PR N GEGAGSR GVAGGVDDLARLAEKKIGLP PGKELYLDS+IKACL+WKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLL GFYG GPQG+ASRGPRP+GGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIG+QFRQGRQEDAHEFLRHLLDKMVDCYLKRKG+KSSAP+RLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSI+VALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK
Sbjct: 205 GGQKPRTNAGEGAGSREGVAGGVDDLARLAEKKIGLPPPGKELYLDSKIKACLQWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLNGFYGHGPQGIASRGPRPMGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGRQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGVKSSAPSRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIEVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 486
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD98_ECTSI) HSP 1 Score: 309 bits (792), Expect = 1.690e-96 Identity = 152/270 (56.30%), Postives = 195/270 (72.22%), Query Frame = 1
Query: 67 VDDLARLAEKKIGLPAPGKELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLG--AISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDL----SRGV----RSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 846
+++LAR AEK I LP +ELY +S+++ L W+ ++G GL N+GNTC+LN+ LQCLSY+PPLAQHLL G Y QG S P G +F + +IL AM++ Q+HQ + AI P+ NLR IG++FR+GRQEDAHEFLRHL+DKM YL+R+G+ APNRLAETTPI+R+FGGYLRS+LKC++CG CSDTFDPFMDL+M++ S GV RS+ ALRRF A E LG+GNEW+CGGC K V+AEK+LSVFK
Sbjct: 94 IEELARHAEKDIRLPTKEQELYPESQVRPNLTWRWPCQIGVGLENMGNTCYLNSILQCLSYVPPLAQHLLNGSYSQGSHATCSESPFSFNGSTDFCEDDILGAMQKLVGQIHQTKSGSAEQQAIRPRTFSDNLRKIGEKFRRGRQEDAHEFLRHLVDKMAGSYLERRGVDPFAPNRLAETTPIHRVFGGYLRSQLKCSECGFCSDTFDPFMDLAMNVEKVDSSGVAMNERSLQAALRRFTAPETLGAGNEWKCGGCNKLVEAEKNLSVFK 363
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG0_9PHAE) HSP 1 Score: 283 bits (723), Expect = 1.290e-85 Identity = 156/331 (47.13%), Postives = 197/331 (59.52%), Query Frame = 1
Query: 67 VDDLARLAEKKIGLPAPGKELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAME--------QHTK--------------------QVHQGQFTGLG--AISPKVLVQNLRMIGKQFRQGRQ---------------------------------EDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDL----SRGV----RSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 846
+D+LAR AEK I LP +ELY +S+++ L W+ ++G GL N+GNTC+LN+ LQCLSY+PPLAQHLL G Y QG Q S P PL G +F + +IL AM+ QH Q+HQ + AI P+ NLR IG++FR+GRQ EDAHE LRHL+DKM YL+R+G+ A NRL ETTPI+R+FGGYLRS+L+C+KCG CSDTFDPFMDL+M++ SRGV RS+ ALRRF A E LG+GNEW+CGGC K V+AEK+LSVFK
Sbjct: 94 IDELARRAEKDIRLPTKQQELYPESQVRPNLTWRWPCQIGVGLENMGNTCYLNSILQCLSYVPPLAQHLLNGGYSQGSQATCSESPLPLNGSTDFGEDDILGAMQKLVGQVLLQHQMSARVLYLSALLGISRDLPLFQIHQTKSGSADQQAIRPRTFSDNLRKIGEKFRRGRQVMNLASRTRPISLRCFSFLPDQRTSGDATPYGQEDAHELLRHLVDKMAGSYLERRGVDPFASNRLGETTPIHRVFGGYLRSQLECSKCGFCSDTFDPFMDLAMNVEKVDSRGVAMKERSLQAALRRFTAPETLGAGNEWKCGGCNKLVEAEKNLSVFK 424
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: USP (domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY7_9STRA) HSP 1 Score: 239 bits (610), Expect = 2.350e-74 Identity = 116/228 (50.88%), Postives = 155/228 (67.98%), Query Frame = 1
Query: 157 LRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSV 840
L W+++ ++GPGL+NLGNTCFLNATLQCL Y PPL QHLL YG + R + V AA+ + + AISPK +V N+R IGKQFR GRQEDAHEFLR L+D M + L+R G+K++AP+RL ETT INR+FGGYLR++++CTKC +CS+T++ +MDLS+D+ + S++ AL+RF A E L S N WRCGGCK+ V A K L++
Sbjct: 1 LEWRELSKVGPGLQNLGNTCFLNATLQCLLYCPPLVQHLLNHKYGAPAAAQQAHHGRA-----QLNLVSNTAAVARSS---------AYSAISPKTIVANIRTIGKQFRPGRQEDAHEFLRKLVDSMAEAILRRHGVKANAPHRLDETTAINRVFGGYLRNQVQCTKCRYCSNTYELYMDLSLDMVGNISSLEDALKRFQAVETLDSSNRWRCGGCKQKVCARKQLTI 214
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZBR0_NANGC) HSP 1 Score: 229 bits (584), Expect = 3.630e-68 Identity = 126/266 (47.37%), Postives = 167/266 (62.78%), Query Frame = 1
Query: 103 GLPAPGKELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQH------------LLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGA---------ISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLS 837
GLP P K ++ +S+I + W +V R+GPGL NLGNTCFLNATLQCL+YLPPLAQ+ +L GQG +G G + GG+ + +++A M HT G G G ISPK +V NL+ + + FR GRQEDAHEFLRHLLD + L+ +KS+AP RLAETT ++RIFGGYLRS+++CT+CGHCS+T+D F+DLS+++ V ++ AL RF A E L N WRC C + V A+K LS
Sbjct: 108 GLPTPEKGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSKKEEERVPSVLSPGAGQGHRG----GGQARGGWLGLVR-DLIANM--HTGSGAGGGDRGDGLARREGGRSPISPKAIVGNLKALNRHFRVGRQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRWRCPACSQLVCAQKRLS 366
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase 36 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEV7_9STRA) HSP 1 Score: 229 bits (584), Expect = 4.350e-65 Identity = 126/266 (47.37%), Postives = 167/266 (62.78%), Query Frame = 1
Query: 103 GLPAPGKELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQH------------LLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGA---------ISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLS 837
GLP P K ++ +S+I + W +V R+GPGL NLGNTCFLNATLQCL+YLPPLAQ+ +L GQG +G G + GG+ + +++A M HT G G G ISPK +V NL+ + + FR GRQEDAHEFLRHLLD + L+ +KS+AP RLAETT ++RIFGGYLRS+++CT+CGHCS+T+D F+DLS+++ V ++ AL RF A E L N WRC C + V A+K LS
Sbjct: 108 GLPTPEKGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSKKEEERVPSVLSPGAGQGHRG----GGQARGGWLGLVR-DLIANM--HTGSGAGGGDRGDGLARREGGRSPISPKAIVGNLKALNRHFRVGRQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRWRCPACSQLVCAQKRLS 366
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS17_9STRA) HSP 1 Score: 226 bits (577), Expect = 3.280e-64 Identity = 121/262 (46.18%), Postives = 163/262 (62.21%), Query Frame = 1
Query: 103 GLPAPGKELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGP--------RPLGGFREFTKVEILAAMEQHTKQVHQGQFT---------GLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLS 837
GLP P K ++ +S+I + W +V R+GPGL NLGNTCFLNATLQCL+YLPPLAQ+ L + V S G + GG+ + +++A M HT G ISPK +V NL+ + + FR GRQEDAHEFLRHLLD + + L+ +KS+AP RLAETT ++RIFGGYLRS+++CT+CGHCS+T+D F+DLS+++ V ++ AL RF A E L N W+C C + V A+K LS
Sbjct: 108 GLPTPEKGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSKKEEESVPSVLSPGAGQGHRGGGQARGGWLGLVR-DLIANM--HTGXXXXXXXXXXXLARREGGRSPISPKAIVGNLKALNRHFRVGRQEDAHEFLRHLLDALQNGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRWKCPACSQLVCAQKRLS 366
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5Y3_9STRA) HSP 1 Score: 199 bits (506), Expect = 1.890e-57 Identity = 110/259 (42.47%), Postives = 149/259 (57.53%), Query Frame = 1
Query: 88 AEKKIGLPAPGKELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRP-----LGGF-REFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 846
A+ +G+P + L S LRW++V GPGL NLGNTCFLN+T+QCL+ LPPL Q+L + V G R +GGF R+F T A +PK +V NLR I + F+ GRQEDAHE+LR LLD + L R G+K +A R ET+ ++R+FGGYLRS+LKC C +CS+T+D +DLS+++ V S+ AL F A E L N W+CGGC K V+A K ++VF+
Sbjct: 27 ADNPLGVPPAAEHLAPASLAGRYLRWERVRGPGPGLSNLGNTCFLNSTMQCLAALPPLVQYL---------ESVGEDGGRNDLLGLIGGFMRKFGG-------------------TRSNAFAPKAIVGNLRRISRNFKLGRQEDAHEYLRQLLDGLHKSCLMRSGLKPTACGRREETSAMHRLFGGYLRSQLKCNDCAYCSNTYDACLDLSLEIHGKVSSLPSALEAFQAAEILDKDNRWKCGGCNKLVRARKQITVFR 257
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFU1_9STRA) HSP 1 Score: 194 bits (492), Expect = 4.180e-57 Identity = 106/247 (42.91%), Postives = 145/247 (58.70%), Query Frame = 1
Query: 106 LPAPGKELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 846
LP ++L I+ LRW++ GPGL NLGNTCF NATLQ L+ L P Q+L ++ RG ++LA + ++ G+ A +PK ++ NLR I K FRQGRQEDAHEFLRHLLD + L R+G+K + R ET+ I RIFGGYLRS+LKC+ C C T+D F+DLS++++ + S+ AL+ F A E L N W+CGGC K V+A K +++FK
Sbjct: 25 LPPLEEQLTPPDLIQQLLRWRKPRGSGPGLVNLGNTCFANATLQSLASLAPFVQYL---------DDLSPRGD------------DLLAVVNGFFQRF--GRVAPGSAFAPKQVIGNLRRIAKSFRQGRQEDAHEFLRHLLDGLHRACLVREGLKPTDCGRREETSAIYRIFGGYLRSQLKCSNCAFCLHTYDAFLDLSLEITGKISSLPSALQMFQAAEVLDKHNRWKCGGCGKHVRARKQITIFK 248
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GFT3_PHYRM) HSP 1 Score: 195 bits (495), Expect = 1.010e-53 Identity = 110/267 (41.20%), Postives = 152/267 (56.93%), Query Frame = 1
Query: 49 VGVAGGVDDLARLAEKKIGLPAPGKELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLL-KGFYGQGPQGVASRGPRPLGGFREFTKVEILA--AMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSV 840
V V G +D+ A +KK KEL ++ L W++ ++GPG NLGNTC+LN+ LQCL+Y P AQ LL K + G ++ GF A AM + + H + + PK LV N+R I K FR GRQED+HEF R LLD M L++ IK+ + A TT ++R+FGG L++ LKC KCGH S+ FD F+DLS++++ GV S+ ALR F ATE+L N W+C C KP +AEK L++
Sbjct: 48 VRVIGRLDEKAEKPKKK-----EAKELTAAESVERVLTWQRSKKIGPGFANLGNTCYLNSVLQCLTYTPCFAQFLLDKEVFASFNGGNSNAKLNKTNGFSGSNTGGFCAVRAMSRLLQSAHGNN--SVRVVQPKELVMNVRHISKSFRIGRQEDSHEFFRLLLDSMQRSCLRKARIKNET-HSAASTTFVHRMFGGKLKNSLKCAKCGHVSERFDDFLDLSLEIAHGVTSVKGALRHFTATEKLDDRNAWKCSSCGKPSRAEKGLTI 306 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7288.15480.1 >prot_E_fasciculatus_S2_contig7288.15480.1 ID=prot_E_fasciculatus_S2_contig7288.15480.1|Name=mRNA_E_fasciculatus_S2_contig7288.15480.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=282bp GSQTPRANGGEGAGSRVGVAGGVDDLARLAEKKIGLPAPGKELYLDSRIKback to top mRNA from alignment at E_fasciculatus_S2_contig7288:2084..7047+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7288.15480.1 ID=mRNA_E_fasciculatus_S2_contig7288.15480.1|Name=mRNA_E_fasciculatus_S2_contig7288.15480.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4964bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7288:2084..7047+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7288:2084..7047+ >mRNA_E_fasciculatus_S2_contig7288.15480.1 ID=mRNA_E_fasciculatus_S2_contig7288.15480.1|Name=mRNA_E_fasciculatus_S2_contig7288.15480.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=846bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7288:2084..7047+ (Ectocarpus fasciculatus EfasUO2)back to top |