mRNA_E_fasciculatus_S2_contig7274.15468.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7274.15468.1
Unique NamemRNA_E_fasciculatus_S2_contig7274.15468.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7274.15468.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0S9_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 1.660e-65
Identity = 205/256 (80.08%), Postives = 205/256 (80.08%), Query Frame = 3 
Query: 1194 IRGRKSXXXXGSGRDGEAGSNNGSKSAGLGAGGSSYSRSGSKGLLAMGASLLSGERKTGLAALGSKGTPAKTARRALLQETKQKRTSESKPRQGIFETLRQRSSGNMAESSTSSGRLGNSXXXXXXXXGS----LKRGQSPTVPATSTRQG---------GRPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTTDGLLDGVXXXXXXXXXXXXXXXDEEPDFWSKYGVIDQDALDEDAEIEI 1922
            IRGRKS    GSGRDGE GSNNGSKS GLGAGGSSYSRSGSKG LAMGASLLSGERKTGLAALGSKGTPAKTARRALL ET QKRTSESKPRQGIFETLRQRSSGNMAES TSSGRLGNS XXX    GS    LKRGQSPTVPATSTRQG         GR   XXXXXXXXXXXXXXXXXXXX                 XXX  TDGLLDG XXXXXXXXXXXXXXXDEEPDFWSKYGVIDQDALDEDAEIEI
Sbjct: 1452 IRGRKSSRGSGSGRDGETGSNNGSKSGGLGAGGSSYSRSGSKGFLAMGASLLSGERKTGLAALGSKGTPAKTARRALLHETMQKRTSESKPRQGIFETLRQRSSGNMAES-TSSGRLGNSSXXXNGRTGSGSSSLKRGQSPTVPATSTRQGAPSTRAPGGGRDKSXXXXXXXXXXXXXXXXXXXXVVPSQGRSEEGANAAGDXXXXXTDGLLDGXXXXXXXXXXXXXXXXDEEPDFWSKYGVIDQDALDEDAEIEI 1706
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BLAST of mRNA_E_fasciculatus_S2_contig7274.15468.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL0_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 7.510e-28
Identity = 155/243 (63.79%), Postives = 156/243 (64.20%), Query Frame = 3 
Query: 1194 IRGRKSXXXXGSGRDGEAGSNNGSKSAGLGAGGSSYSRSGSKGLLAMGASLLSGERKTGLAALGSKGTPAKTARRALLQETKQKRTSESKPRQGIFETLRQRSSGNMAESSTSSGRLGNSXXXXXXXXGSLKRGQSPTVPATSTRQGGRPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTTDGLLDGVXXXXXXXXXXXXXXXDEEPDFWSKYGVIDQDALDEDAEIEI 1922
            IRGRKS    GS RDGE G NNGSKS GLGAGGSSY                           GSKGTPAKTARRALLQETKQKRTSESKPRQGIFETLRQ                                      P+T    G R   XXXXXXXXXXXXXXXXXXXXXXXXX    XXXXXXXXXXX  TDGLLDGVXXXXXXXXXXXXXXXDEEPDFWSKYGVIDQDALDEDAEIEI
Sbjct:  344 IRGRKSSRGSGSSRDGETGWNNGSKSGGLGAGGSSYXXXXXXXXXXXXXXXXXXXXXXXXXXXGSKGTPAKTARRALLQETKQKRTSESKPRQGIFETLRQ------------------------------------GAPSTRAPGGRRDKSXXXXXXXXXXXXXXXXXXXXXXXXXGRSEXXXXXXXXXXXXXTDGLLDGVXXXXXXXXXXXXXXXDEEPDFWSKYGVIDQDALDEDAEIEI 550
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7274.15468.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.660e-6580.08protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.510e-2863.79protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7274contigE_fasciculatus_S2_contig7274:1680..5199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1925
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002110.1
Cds size1383
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842391.8421693-CDS-E_fasciculatus_S2_contig7274:1679..21081696842391.8421693-CDS-E_fasciculatus_S2_contig7274:1679..2108Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7274 1680..2108 -
1696842391.8545144-CDS-E_fasciculatus_S2_contig7274:2770..28751696842391.8545144-CDS-E_fasciculatus_S2_contig7274:2770..2875Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7274 2771..2875 -
1696842391.865518-CDS-E_fasciculatus_S2_contig7274:3506..43551696842391.865518-CDS-E_fasciculatus_S2_contig7274:3506..4355Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7274 3507..4355 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842391.8753722-UTR-E_fasciculatus_S2_contig7274:4355..47291696842391.8753722-UTR-E_fasciculatus_S2_contig7274:4355..4729Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7274 4356..4729 -
1696842391.8867147-UTR-E_fasciculatus_S2_contig7274:5031..51991696842391.8867147-UTR-E_fasciculatus_S2_contig7274:5031..5199Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7274 5032..5199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7274.15468.1prot_E_fasciculatus_S2_contig7274.15468.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7274 1680..4355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7274.15468.1

>prot_E_fasciculatus_S2_contig7274.15468.1 ID=prot_E_fasciculatus_S2_contig7274.15468.1|Name=mRNA_E_fasciculatus_S2_contig7274.15468.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=461bp
MGNVSAGTAAGAAAATAECADEADDGDIDAGVGAAADNAAEEEAVVVAVV
PSSEASAAVVVDDAAAVAAAPTDAAAAAAAAAAAGTTVDGADVSAEEGGG
VPTPTLPAAETPAVAAAAASEPPQQRDEEHVERRQGSAADSSISATADAA
KSSPDGEDDAVVPEPVTAVVATGEEPTTTAPNTQEAGTTSSSSKPSGLTS
SSSGGGGGHTSSASSLLIRGRKSSRGGGSGRDGEAGSNNGSKSAGLGAGG
SSYSRSGSKGLLAMGASLLSGERKTGLAALGSKGTPAKTARRALLQETKQ
KRTSESKPRQGIFETLRQRSSGNMAESSTSSGRLGNSSSGGSGGSGSLKR
GQSPTVPATSTRQGGRPGGGRGKSTAAGGRREEQQGVVVVPLSHERSEEG
ANAGGGGGGPTTDGLLDGVDGVEEVEDDASDSDDDEEPDFWSKYGVIDQD
ALDEDAEIEI*
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mRNA from alignment at E_fasciculatus_S2_contig7274:1680..5199-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7274.15468.1 ID=mRNA_E_fasciculatus_S2_contig7274.15468.1|Name=mRNA_E_fasciculatus_S2_contig7274.15468.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3520bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7274:1680..5199- (Ectocarpus fasciculatus EfasUO2)
GCGGCGTCTGCTGCCGAGAGCCTTGCCGCCGCCGCCGCCGAGGCGGTGGT
GGTGGTGGCGCCGCAAGCGGGCGGCCAGAAGAGCGAGGATGCCGGGGGGA
CGGGTGACTCCGCGGAGGAAGCGGAGTCGGAGGTGGATTCTGCCGCGGCT
AGGAGTGGAGCGGCAGCGGTGAGCAATACGGTAGTGCAACTGCTGTAAAT
GATCGGTATGCCCGCTAAAATTGTGGTCTAACCACTAAGGCATGCGAAAC
ATGAGTACGCCCCCGCCCTCCCCCAGGCCGATCATGGCAGTGTTTCGCGG
GCGCGAAGCCCACCCGCACCTATTTCTCAAGAAATAAAGACCGATTCTCT
GTGCTCCTCTCAGTCGACGCCGTAACAACACACCTTCTTTGGTATCTATC
TGTCTGCCCTGTACCTATTGTAACAACCCATCTTCTTTGCTGGGGTCTAT
CTGTTTGTCTGCCGTTTCAGGAGAAGTCTTCCGCGGACGCTGCGGCTACC
GAGCCAGCGACCGGGGGATTGCAGGCTCTGGGCCGTTTCCTGTTCGGAGC
GCGCACCGAAAACGGCCGCACCGTTGCCGACGATGCCGGCGATGCCGGCG
ACGCTGCTCCGGCGGCGGCGGCGGCGGCGGCGGCTACCGCTGTTGTCGCC
GCAGAGGGGGGGGGGAGCCGTCGGAGTCGGCGAGAGCGGCGCCGGCGCCG
GCGGCAGCAGATGCTGTGGGCTCGAGAGATTGTGGGGAGCCGGCGAAGGC
AGAGGTGGTCGGCGAGCAGGCCTTGGAGCTAGCGGCGGCGGTGGCGGTGG
CGGCGGCGGAGGGCGGGTCGTTCTCTTCTTCTTCTACGTCGTCGATGGGG
AACGTTAGCGCCGGGACTGCTGCTGGGGCGGCCGCGGCGACGGCGGAGTG
CGCAGACGAAGCCGATGACGGAGACATCGACGCCGGTGTTGGTGCTGCTG
CCGACAATGCGGCCGAGGAAGAGGCGGTGGTGGTAGCGGTGGTGCCCTCT
TCCGAAGCATCGGCCGCTGTTGTCGTCGATGATGCAGCTGCCGTGGCGGC
GGCCCCAACAGACGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGGCA
CCACCGTTGACGGTGCTGATGTCAGCGCGGAGGAGGGTGGTGGTGTGCCT
ACCCCAACGTTGCCTGCCGCGGAAACGCCCGCGGTTGCTGCTGCTGCTGC
TAGCGAACCACCACAACAGCGGGACGAGGAGCATGTCGAGCGACGACAAG
GTTCGGCAGCGGACTCCTCAATTTCCGCCACCGCTGACGCCGCTAAAAGC
TCCCCGGATGGTGAAGATGATGCTGTTGTGCCCGAACCTGTCACAGCCGT
CGTTGCGACCGGCGAAGAACCAACCACGACGGCCCCGAACACCCAAGAGG
CCGGCACCACCAGCAGCAGCAGTAAGCCCTCCGGTCTTACCTCGTCCAGT
AGCGGCGGCGGCGGCGGTCACACCTCTTCGGCGTCTTCGTTGTTGATCAG
GGGGAGAAAGAGCTCCAGGGGCGGCGGCAGCGGCAGAGACGGAGAAGCGG
GCTCGAATAATGGGTCGAAATCGGCCGGCTTGGGCGCGGGGGGCTCCTCG
TACTCCCGGTCGGGGTCGAAGGGCTTACTGGCGATGGGGGCGTCGCTTTT
GTCCGGAGAGAGGAAGACCGGCCTGGCGGCGTTGGGGTCGAAGGTGCGTG
ATTGGTGTGTTGTGTTTCGCTGGCGTCAAGCCGGCGTGCCCGTGTTTTTG
GAGCGCTTCCTCGGTAGTGTTTTCCGGTGCCTTTTTCTGCTTGGTTTCCA
GCAGATGGCCCAGATAAAAAATGCAAGCTGCTGATGTTGATGTGTCTGCC
GTTTTCGATTGGTGGTGGTGGGCGCTGGTGGTGGAACTCGTGATCTGCGA
CGTGAGCAGCGGACGTTCTTTCCTCCCTCCCAAAGATTTCCCCCCCAAGA
AAACTCTCTCATCGGGGCATGCACTACCATGCACAAAGCTCGAGGTGTAG
AAAGAGTACCGTTTCCGATGAACATGGGCACACTTTTCGGGGTGAGCGCC
CAACTCGCGCCAAGAGTCGAAGGTTGAGGTTGCACGGTTTGCCCCCCCCT
CCCCCCGGCATGTACAACGTACAATACCCGGGTACGCTTCTTTCCGGTAC
CCTCGGCACAACCTTGGGGTTAACCCCGTAACCGCCGCTGCCCCGTCCTT
GAACTCCTCCCCCCCGTGGGAGCAATGCTCCGTCCTCTCGAGGACGCGCG
GTCAATGGTCTAACCGCTAAGGCATGCAAAACATGAGTAACCCCTCCCCC
CTCAACCACAATACCTCACCACAGGGCACCCCGGCCAAGACGGCACGAAG
AGCATTGCTGCAAGAGACGAAGCAGAAGAGGACTAGCGAGAGCAAGCCCC
GACAGGGTATCTTCGAGACGTTGCGCCAGGTGAAGTTAAATTAAAAGACT
GTTTATTACAGATTTGTATGCATAGGTGTCTTTTTTTTTTTGTTCGTTGA
GGTTGTTCGCTGGCCACTGCGAGTGTCTGCCGTGTGGGCGGTTCTAGCTT
GGGAAACGTCAGTGATGGCAGCTGGCTGTTGATTCACACGTCGCTTTCAT
CTTGCATCACGCCTTGATGACACCGCTATTACGCTCTGATGAACCCACTC
CGGAGGCGCGCCTTGCAGTCTCCTGTGTGTTTGTGATTGTTCGCATTGTT
TCCAAGAGTCAGCGTATTACAAAAAGAAATGGCTTTTCTTTTTCTCGTAT
TCACTATCGCTGCGAATTTACCCATTGCTGATGGGTGTCTTGTTACTGTA
GGGCACCGATTTCCTGCTTTCGAAGGGATGAAATGGGACGCGGGGGGGGG
GCAGGGGGGATCAATGATACTTTTACAAGTTTTATGTTGTCACACATGAT
GAGTTATCTGGCCATTGCACCGCTGTTCAGTGTCCTCATCCATCGACGAG
GAAGAGACCGAGGTGCAAGGGAAAGATCTACCTACGTGTAGACCGACCCA
CGCCGAAATGATACCTTGCTCTTGTCTCTCTCTCTCTCACACACACACAC
ACACACACCCTCGTGATCCTACCCCGCCCTCTGCCGCACAGAGGAGCTCC
GGCAACATGGCCGAGTCGTCGACGTCCTCGGGCCGCCTGGGAAACAGCAG
CAGCGGTGGTAGCGGTGGCAGCGGCAGCCTTAAGCGGGGACAGTCTCCTA
CCGTCCCCGCTACGAGCACGCGGCAGGGGGGGCGTCCGGGCGGGGGGCGT
GGCAAGAGCACGGCGGCGGGGGGGCGGCGGGAAGAGCAACAAGGAGTAGT
AGTCGTGCCGTTGTCCCATGAGCGGAGCGAAGAGGGGGCGAACGCAGGGG
GCGGCGGGGGAGGGCCGACGACGGACGGGCTGCTTGACGGGGTGGATGGC
GTCGAGGAGGTGGAAGACGACGCTTCGGACAGCGATGACGACGAGGAGCC
CGACTTCTGGAGCAAGTACGGGGTGATCGACCAAGACGCCCTGGACGAAG
ACGCCGAGATTGAGATCTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7274:1680..5199-

>mRNA_E_fasciculatus_S2_contig7274.15468.1 ID=mRNA_E_fasciculatus_S2_contig7274.15468.1|Name=mRNA_E_fasciculatus_S2_contig7274.15468.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1383bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7274:1680..5199- (Ectocarpus fasciculatus EfasUO2)
ATGGGGAACGTTAGCGCCGGGACTGCTGCTGGGGCGGCCGCGGCGACGGC
GGAGTGCGCAGACGAAGCCGATGACGGAGACATCGACGCCGGTGTTGGTG
CTGCTGCCGACAATGCGGCCGAGGAAGAGGCGGTGGTGGTAGCGGTGGTG
CCCTCTTCCGAAGCATCGGCCGCTGTTGTCGTCGATGATGCAGCTGCCGT
GGCGGCGGCCCCAACAGACGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCG
CCGGCACCACCGTTGACGGTGCTGATGTCAGCGCGGAGGAGGGTGGTGGT
GTGCCTACCCCAACGTTGCCTGCCGCGGAAACGCCCGCGGTTGCTGCTGC
TGCTGCTAGCGAACCACCACAACAGCGGGACGAGGAGCATGTCGAGCGAC
GACAAGGTTCGGCAGCGGACTCCTCAATTTCCGCCACCGCTGACGCCGCT
AAAAGCTCCCCGGATGGTGAAGATGATGCTGTTGTGCCCGAACCTGTCAC
AGCCGTCGTTGCGACCGGCGAAGAACCAACCACGACGGCCCCGAACACCC
AAGAGGCCGGCACCACCAGCAGCAGCAGTAAGCCCTCCGGTCTTACCTCG
TCCAGTAGCGGCGGCGGCGGCGGTCACACCTCTTCGGCGTCTTCGTTGTT
GATCAGGGGGAGAAAGAGCTCCAGGGGCGGCGGCAGCGGCAGAGACGGAG
AAGCGGGCTCGAATAATGGGTCGAAATCGGCCGGCTTGGGCGCGGGGGGC
TCCTCGTACTCCCGGTCGGGGTCGAAGGGCTTACTGGCGATGGGGGCGTC
GCTTTTGTCCGGAGAGAGGAAGACCGGCCTGGCGGCGTTGGGGTCGAAGG
GCACCCCGGCCAAGACGGCACGAAGAGCATTGCTGCAAGAGACGAAGCAG
AAGAGGACTAGCGAGAGCAAGCCCCGACAGGGTATCTTCGAGACGTTGCG
CCAGAGGAGCTCCGGCAACATGGCCGAGTCGTCGACGTCCTCGGGCCGCC
TGGGAAACAGCAGCAGCGGTGGTAGCGGTGGCAGCGGCAGCCTTAAGCGG
GGACAGTCTCCTACCGTCCCCGCTACGAGCACGCGGCAGGGGGGGCGTCC
GGGCGGGGGGCGTGGCAAGAGCACGGCGGCGGGGGGGCGGCGGGAAGAGC
AACAAGGAGTAGTAGTCGTGCCGTTGTCCCATGAGCGGAGCGAAGAGGGG
GCGAACGCAGGGGGCGGCGGGGGAGGGCCGACGACGGACGGGCTGCTTGA
CGGGGTGGATGGCGTCGAGGAGGTGGAAGACGACGCTTCGGACAGCGATG
ACGACGAGGAGCCCGACTTCTGGAGCAAGTACGGGGTGATCGACCAAGAC
GCCCTGGACGAAGACGCCGAGATTGAGATCTAA
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