mRNA_E_fasciculatus_S2_contig7266.15462.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7266.15462.1
Unique NamemRNA_E_fasciculatus_S2_contig7266.15462.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7266.15462.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J5_9PHAE)

HSP 1 Score: 406 bits (1044), Expect = 1.970e-137
Identity = 221/223 (99.10%), Postives = 223/223 (100.00%), Query Frame = 1
Query:    1 MALRLAAERCCMGKTATRSFATAASKATAASASHDPPLKLYGIPARYANATYSAASKAGELEIVQRDLDAFQHIIRNNANFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQIGANETIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASMKTLMQDSVAS 669
            MALRLAAERCC+GKTATRSFATAASKATAASASHDPPLKLYGIPARYANATYSAASKAGELEIVQRDLDAFQHIIRNNANFKAYLTNPTVSRSAKV+MVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQIGANETIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASMKTLMQDSVAS
Sbjct:   71 MALRLAAERCCVGKTATRSFATAASKATAASASHDPPLKLYGIPARYANATYSAASKAGELEIVQRDLDAFQHIIRNNANFKAYLTNPTVSRSAKVEMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQIGANETIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASMKTLMQDSVAS 293          
BLAST of mRNA_E_fasciculatus_S2_contig7266.15462.1 vs.
Match: ATP (synthase O subunit, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT6_ECTSI)

HSP 1 Score: 406 bits (1044), Expect = 3.470e-137
Identity = 221/223 (99.10%), Postives = 223/223 (100.00%), Query Frame = 1
Query:    1 MALRLAAERCCMGKTATRSFATAASKATAASASHDPPLKLYGIPARYANATYSAASKAGELEIVQRDLDAFQHIIRNNANFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQIGANETIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASMKTLMQDSVAS 669
            MALRLAAERCC+GKTATRSFATAASKATAASASHDPPLKLYGIPARYANATYSAASKAGELEIVQRDLDAFQHIIRNNANFKAYLTNPTVSRSAKV+MVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQIGANETIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASMKTLMQDSVAS
Sbjct:   87 MALRLAAERCCVGKTATRSFATAASKATAASASHDPPLKLYGIPARYANATYSAASKAGELEIVQRDLDAFQHIIRNNANFKAYLTNPTVSRSAKVEMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQIGANETIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASMKTLMQDSVAS 309          
BLAST of mRNA_E_fasciculatus_S2_contig7266.15462.1 vs.
Match: OSCP/delta (subunit of ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGT7_9STRA)

HSP 1 Score: 223 bits (567), Expect = 9.240e-67
Identity = 127/221 (57.47%), Postives = 164/221 (74.21%), Query Frame = 1
Query:    1 MALRLAAERCCMGKTATRSFATAASKATAASASHDPPLKLYGIPARYANATYSAASKAGELEIVQRDLDAFQHIIRNNANFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQIGANETIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASMKTLMQDSV 663
            MALR  A R      A R+FA+AA     A+A H PPLKL+GIPARYANATY+AASKAG+L+ V+ DL AF  II  NA F +YL+NPTV+R+ KV +++  FD K  T+ +++NL   MA NARL+DA +VI A+T ++KAK+GE+DAIVTTAEPL+  QEKAL A LK Q+G    I L+T+V+ AL+GGLTVQIGDKFMDLSI++KI S+K  +  +V
Sbjct:    1 MALRQLAARAARPLCA-RTFASAA-----AAADHSPPLKLFGIPARYANATYTAASKAGKLDAVEADLAAFGAIITRNAEFSSYLSNPTVTRADKVALIESVFDGK-HTTDISRNLFTTMAANARLSDARRVIGAFTELMKAKRGEVDAIVTTAEPLSAAQEKALIAALKKQVGDTAKIALETKVDAALIGGLTVQIGDKFMDLSIATKIKSVKNTLAGTV 214          
BLAST of mRNA_E_fasciculatus_S2_contig7266.15462.1 vs.
Match: Hypothetical (protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5IKY9_9STRA)

HSP 1 Score: 169 bits (428), Expect = 2.740e-46
Identity = 90/198 (45.45%), Postives = 133/198 (67.17%), Query Frame = 1
Query:   46 ATRSFATAASKATAASASHDPPLKLYGIPARYANATYSAASKAGELEIVQRDLDAFQHIIRNNANFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQIGANETIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASM 639
            A R  A  A++  +  A H P + LYGI ARYANA Y AASK+  L++V+ +L + Q    +NA F  YL NPT++R  KV  +      K   S VT NL+  +AGNARLAD  KV+D+Y +++KAK+GE++A + +AEPLT  Q  A+A  +K Q+   + ++L T+V+P+++GGL VQIGD+F+DLS+S KI+++
Sbjct:    8 AVRRLAGPAARRFSVQAEHKPLINLYGINARYANAAYIAASKSKSLDLVETELLSIQKTAHDNAEFGDYLKNPTIARKDKVSAMTSLLSEK--MSPVTVNLMTTLAGNARLADTTKVVDSYIQLMKAKRGEVEATIISAEPLTKAQSDAIATAMKGQVPKGKKVILSTQVDPSILGGLQVQIGDQFLDLSVSGKISTI 203          
BLAST of mRNA_E_fasciculatus_S2_contig7266.15462.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HDJ6_9STRA)

HSP 1 Score: 169 bits (427), Expect = 3.960e-46
Identity = 91/203 (44.83%), Postives = 137/203 (67.49%), Query Frame = 1
Query:   40 KTATRSFATAASKATAASASHDPPLKLYGIPARYANATYSAASKAGELEIVQRDLDAFQHIIRNNANFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQIGANETIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASMKTL 648
            +TA    AT  +    +S +H PP+ LYG+ ARYANA Y AASK+  L+ V+ +L A +    ++  FK +L NP +SR  K   V     AK   S VT NL+  +AGNARLA+  K++D+Y +++KAK+GE++A + +A+PLT  Q +A+AA +K Q+G  +T+VL TEV+P+++GGL VQIGD+F+DLS+ SKI ++  +
Sbjct:    7 RTAATRTATRTTTRALSSDAHKPPIDLYGLHARYANAAYVAASKSSTLDAVESELLAIKASATSSPAFKTFLENPLISRDEKEAQVKDMLAAK--VSPVTLNLMSTLAGNARLAETPKIVDSYVQLMKAKRGEVEATIISADPLTKAQTEAVAAAMKNQVGEGKTVVLSTEVDPSILGGLQVQIGDQFLDLSVGSKIDAVSRM 207          
BLAST of mRNA_E_fasciculatus_S2_contig7266.15462.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8J3_HETAK)

HSP 1 Score: 170 bits (430), Expect = 5.430e-46
Identity = 97/187 (51.87%), Postives = 126/187 (67.38%), Query Frame = 1
Query:   70 ASKATAASASHDPPLKLYGIPARYANATYSAASKAGELEIVQRDLDAFQHIIRNNANFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQIGANETIVLKTEVNPALVGGLTVQIGDKFMDLSISSKI 630
            A++A A  A+H PP +L+G+ ARYANA Y AASKAG LE V+ ++  FQH++  NA F AYL NPTVSR AKV  VDK F A S  SS+T+NLL AMA NARL +  KV+ AY  +++AK+G                   +   L+AQ+GA ++I+L T V+PA+VGGL VQIGDK MDLS+S+KI
Sbjct:   59 AARAFATEAAHMPPKRLFGLHARYANALYVAASKAGALEQVETEVLGFQHMLAKNAEFAAYLRNPTVSREAKVGAVDKLF-AGSSVSSLTQNLLSAMASNARLGETGKVVSAYAELMRAKRGXXXXXXXXXXXXXXXXXXKVTKALEAQVGAGKSILLTTAVDPAIVGGLVVQIGDKVMDLSVSTKI 244          
BLAST of mRNA_E_fasciculatus_S2_contig7266.15462.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MZM0_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.260e-45
Identity = 88/190 (46.32%), Postives = 131/190 (68.95%), Query Frame = 1
Query:   70 ASKATAASASHDPPLKLYGIPARYANATYSAASKAGELEIVQRDLDAFQHIIRNNANFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQIGANETIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASM 639
            AS+  A +A H PP+ L+GI ARYANATY AASK+G L+ V+ +L A +    ++  F ++L NP +SR  K   V        K + VT NL+  +AGNARLAD  K++D Y +++KAK+GE++A++ +A+ LT  Q  A+AA +K Q GA + +VL T+V+P ++GGL +QIGD+F+DLS+SSKI ++
Sbjct:   21 ASRTLAVAAEHRPPVDLHGIHARYANATYVAASKSGTLDKVETELAAIKATATSSPAFASFLENPLISRDNKEAQVQDMLGG-GKVTPVTLNLMTTLAGNARLADVPKIVDTYVQLMKAKRGEVEAVIISADKLTKAQTDAVAAAMKGQAGAGKKVVLSTKVDPTIIGGLQIQIGDQFLDLSVSSKIDAL 209          
BLAST of mRNA_E_fasciculatus_S2_contig7266.15462.1 vs.
Match: Hypothetical (protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AD47_9STRA)

HSP 1 Score: 166 bits (419), Expect = 3.000e-45
Identity = 85/181 (46.96%), Postives = 129/181 (71.27%), Query Frame = 1
Query:   88 ASASHDPPLKLYGIPARYANATYSAASKAGELEIVQRDLDAFQHIIRNNANFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQIGANETIVLKTEVNPALVGGLTVQIGDKFMDLSISSKI 630
            A+A+H PPL+L+G+ ARYANA Y++ASK+G+L+ V+ +L A       +  F  +L NP +SRS+K   V      K   S VT NL+  +AGNARL++A K++D Y+R++KA +GE+ A + +A+PLT  Q  A+A+ +K Q+GA + +VL TEV+P+++GGL VQIGD+F+DLS+ S+I
Sbjct:    1 AAAAHRPPLQLHGLHARYANAVYTSASKSGQLDKVEGELLAIASTAATSPAFAQFLENPLISRSSKEKTVTDLLSGK--VSPVTLNLMTTLAGNARLSEAPKIVDTYSRLMKAARGEVSATIISADPLTKAQTDAVASAMKGQVGAGKKVVLSTEVDPSILGGLQVQIGDQFLDLSVKSRI 179          
BLAST of mRNA_E_fasciculatus_S2_contig7266.15462.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TAB1_THAOC)

HSP 1 Score: 165 bits (417), Expect = 1.050e-44
Identity = 89/199 (44.72%), Postives = 128/199 (64.32%), Query Frame = 1
Query:   34 MGKTATRSFATAASKATAASASHDPPLKLYGIPARYANATYSAASKAGELEIVQRDLDAFQHIIRNNANFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQIGANETIVLKTEVNPALVGGLTVQIGDKFMDLSISSKI 630
            +  T  R+  T   +  A  A+H PPL LYG+ ARYANAT+ AASK+  LE V+ +L A ++   N+  F ++L NP +SR  K   V      K  T+ VT NL+  +AGNARL +   + D Y +++KAK+GE++A + +AEPL   QEKA++  +K Q      +VLKTEVNP+++GGL +QIGDKF+DLS+ S+I
Sbjct:    2 LSSTVRRAATTMGRRTMATDAAHRPPLDLYGLNARYANATFVAASKSNNLETVESELLAIKNSAENSKEFASFLENPLISRDDKTKTVTDLLSGK--TTPVTTNLMTTLAGNARLNNIVGITDDYIKLMKAKRGEVEATIISAEPLNKTQEKAVSEAMKTQFPKGAKVVLKTEVNPSILGGLQIQIGDKFLDLSVGSRI 198          
BLAST of mRNA_E_fasciculatus_S2_contig7266.15462.1 vs.
Match: Hypothetical (protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WJE6_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.170e-44
Identity = 89/203 (43.84%), Postives = 138/203 (67.98%), Query Frame = 1
Query:   34 MGKTATRSFATA-ASKATAASASHDPPLKLYGIPARYANATYSAASKAGELEIVQRDLDAFQHIIRNNANFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQIGANETIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASM 639
            + + A+RS A A AS+  A +A H PP+ L+G+ ARYANATY AASK+  LE V+ +L A +     +  F ++L NP +SR  K   V      K   + VT NL+  +AGNARL++  K++D Y  ++KAK+GE++A++ +A+ LT  Q +A+A+ +K Q+GA + +VL T+V+P ++GGL +QIGD+F+DLS+SSKI ++
Sbjct:   16 LARAASRSVARAGASRTLAVAAEHRPPVDLHGLQARYANATYVAASKSNSLEKVEGELLAIKATAGTSPAFASFLENPLISRDDKEAQVTDMLSGK--VTPVTLNLMTTLAGNARLSEVPKIVDTYVELMKAKRGEVEAVIISADKLTKAQAEAVASAMKGQVGAGKKVVLSTKVDPTIIGGLQIQIGDQFLDLSVSSKIDAL 216          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7266.15462.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.970e-13799.10protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
ATP3.470e-13799.10synthase O subunit, mitochondrial n=1 Tax=Ectocarp... [more]
OSCP/delta9.240e-6757.47subunit of ATPase n=1 Tax=Tribonema minus TaxID=30... [more]
Hypothetical2.740e-4645.45protein n=2 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Hypothetical3.960e-4644.83protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]
Hypothetical5.430e-4651.87protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical1.260e-4546.32protein n=1 Tax=Odontella aurita TaxID=265563 RepI... [more]
Hypothetical3.000e-4546.96protein n=1 Tax=Minutocellus polymorphus TaxID=265... [more]
Uncharacterized1.050e-4444.72protein n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]
Hypothetical1.170e-4443.84protein n=2 Tax=Pseudictyota dubia TaxID=2749911 R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7266contigE_fasciculatus_S2_contig7266:3708..7315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score413.3
Seed ortholog evalue7.2e-113
Seed eggNOG ortholog2880.D7FJT6
Preferred nameATP5
Model size1455
KEGG koko:K02113,ko:K02137
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map00195,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00157,M00158
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005886,GO:0008270,GO:0009507,GO:0009536,GO:0016020,GO:0016469,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045259,GO:0046872,GO:0046914,GO:0050897,GO:0071944,GO:0098796,GO:0098798,GO:0098800
Exons7
EggNOG free text desc.proton-transporting ATP synthase activity, rotational mechanism
EggNOG OGsCOG0712@1,KOG1662@2759
Ec32 ortholog descriptionATP synthase O subunit, mitochondrial precursor
Ec32 orthologEc-06_010220.1
Cds size672
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7266.15462.1prot_E_fasciculatus_S2_contig7266.15462.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7266 4583..7315 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842391.2951255-UTR-E_fasciculatus_S2_contig7266:3707..41491696842391.2951255-UTR-E_fasciculatus_S2_contig7266:3707..4149Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7266 3708..4149 -
1696842391.3105698-UTR-E_fasciculatus_S2_contig7266:4241..45821696842391.3105698-UTR-E_fasciculatus_S2_contig7266:4241..4582Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7266 4242..4582 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842391.3249292-CDS-E_fasciculatus_S2_contig7266:4582..46121696842391.3249292-CDS-E_fasciculatus_S2_contig7266:4582..4612Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7266 4583..4612 -
1696842391.333599-CDS-E_fasciculatus_S2_contig7266:5029..51551696842391.333599-CDS-E_fasciculatus_S2_contig7266:5029..5155Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7266 5030..5155 -
1696842391.3423235-CDS-E_fasciculatus_S2_contig7266:5512..56351696842391.3423235-CDS-E_fasciculatus_S2_contig7266:5512..5635Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7266 5513..5635 -
1696842391.3588812-CDS-E_fasciculatus_S2_contig7266:6224..63981696842391.3588812-CDS-E_fasciculatus_S2_contig7266:6224..6398Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7266 6225..6398 -
1696842391.3674948-CDS-E_fasciculatus_S2_contig7266:6549..66741696842391.3674948-CDS-E_fasciculatus_S2_contig7266:6549..6674Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7266 6550..6674 -
1696842391.3872826-CDS-E_fasciculatus_S2_contig7266:7221..73151696842391.3872826-CDS-E_fasciculatus_S2_contig7266:7221..7315Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7266 7222..7315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7266.15462.1

>prot_E_fasciculatus_S2_contig7266.15462.1 ID=prot_E_fasciculatus_S2_contig7266.15462.1|Name=mRNA_E_fasciculatus_S2_contig7266.15462.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=224bp
MALRLAAERCCMGKTATRSFATAASKATAASASHDPPLKLYGIPARYANA
TYSAASKAGELEIVQRDLDAFQHIIRNNANFKAYLTNPTVSRSAKVDMVD
KAFDAKSKTSSVTKNLLLAMAGNARLADAEKVIDAYTRMLKAKKGEIDAI
VTTAEPLTPQQEKALAAGLKAQIGANETIVLKTEVNPALVGGLTVQIGDK
FMDLSISSKIASMKTLMQDSVAS*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7266:3708..7315-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7266.15462.1 ID=mRNA_E_fasciculatus_S2_contig7266.15462.1|Name=mRNA_E_fasciculatus_S2_contig7266.15462.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3608bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7266:3708..7315- (Ectocarpus fasciculatus EfasUO2)
ATGGCTCTTCGGTTGGCCGCGGAGAGATGCTGCATGGGGAAGACCGCCAC CCGGTCCTTTGCTACCGCCGCCTCTAAGGCGACCGCCGCTTCCGGTGAGT TGCGCCGCAAGACCTCCGGCCGTTGTGCCGCAAGATCTCCGTAGACATGC AGAGGCCGTAGTGAAGACGGTTGGGCCCAACAACAGGGCTCGCCTAGTTG GAGACGACTGCTGAGTTGTGCAGCAGGGCAACATTAGCAGGAACACTCGC ATGAAAGAAGTATGTCGGTGGTGTGGTCGCGAGAAGATTGTTGTTGCTGT TTCATCGTTAGCTGTCACTGCTGCTGCTGCTGCTGCTGCTACTGTCATGG TTTTTCGAAGTTTTAGCGTTATACCTGTGGTACGATTTTCCGCCAACGAG CTTAGAATATACCTCGAAATATCCGCGAATTGTTGCTGGGCTAGGAACCC GCTGCCGTGCAGGTGCGCTATTGCCTTTGTTGTCATGCTGGCAGAATACG TGAGCCATCGATTGTCTCCTCTTCGATTTTCCAACGGAACGCTCGAGGTG GGGCTGTCGAAGGGTTGACCGTTGTCTCTTGTCTCTTCATGACTTTCGTT TTTGTTTTCTGCTCTATTCCCTCCCACACCACACACCTCAGCGAGCCACG ACCCGCCGCTGAAGCTTTACGGCATCCCCGCCCGTTACGCGAACGCCACC TACTCGGCGGCGTCCAAGGCCGGGGAGCTGGAGATCGTGCAACGAGACCT CGACGCCTTCCAGCACGTGAGAAAGAAAGAAAGGAGCGAAACCGCCACTG CTTTGAACTGTCTACGCTGTAACGACCATACTGCTATGTTTTTGTTGCAC CTGATGAATAATATTTTGTAAAATCCCCTGATCGTCCCCTTCCCCCCATC CGCGCGCGCTTTTGCAGATCATCCGTAACAACGCCAACTTCAAGGCGTAC CTGACCAACCCCACGGTGTCGCGGAGCGCGAAGGTGGACATGGTTGACAA GGCCTTCGACGCCAAGTCCAAGACCTCTTCCGTGACCAAGAACCTGCTCC TCGCCATGGCGGGGAACGCCAGGCTGGCGGACGCCGAGAAGGTGCCTTGC CTTGTGTCCGTGTCGTGCGGCATTCACAAGCAGAATCGATCGTAGTGGTT GTGATGGATTCATGATCGTTGTAGTTCGCAAGCAGTAACGGTAGTGGTGG TTGTGGTGGAGATAATCAATGTCGTGCAATGGTGGTCGTGGTGGAAGTGT GTACCGTGGAGGTAGCGCTTGTTTGCGCGGAACTCTCGGGGCCGTAGTCA CAGGCAGGTACTGTAGGCCTCCGTTCTCGACACCGCCGCTGCAGTACAGC TTTCACGTGGGAGGGTAGGGGTCGCTGTCGTCGATGTGGTACGACCGCTG CGCGGTTGTTCTCAGAATGTAAGGCGCAGTGTACAGCGACGTCGTCGTTA GACCTACAATTTTTTTACTGAGACGAGCGGAACAAACCGATACTGTACTG GACAACCAGAAACGGCACCGCTCTAGAAGTAAGTCTGGATGGACCCACCG GCCTGCCCAGGGAGTCCCGCCCCATGAAAAGTAGCACGCAATTTTTTTTA TCCTAGTCTGGCATCGCCCCACAGAGACAAGAAAATATTGCGTTAGTCTC TCCGTCCCTCTACCGCGCGCACTGTACCAGGTGATCGACGCGTACACCCG CATGTTGAAGGCGAAGAAGGGGGAGATCGACGCCATCGTCACCACCGCGG AGCCCCTTACCCCCCAGCAGGAGAAGGCCCTGGCGGCCGGCCTCAAGGCG CAGGTGTGTTGATTTTTTTAGTCTCCCCTGTCTGGAACGGTTTGTGTGTC TGGCTTGAAACCACAGGCTAGGTTTCTGGGATTGAAGGGAGCAAAGGTGG AAGAGGGGGTGTGGTGTTTTTTGGCAAGACGTATCGACACACGTCAGGTT CAACTAGCCTTTACCTGATGCTCGTGTTTCAGAGACGATAGCACGCGTAC GTACAGTTTGTGTAGCGTTCTACAGCGAGTGTCACGTATAGCTTTATAAC CTTACCACTCTCGGGTTTGTCCCGAGCAATGTACCACATCGTATCACAGC AGTGTCTTGAAATCCGCATGCTTCTTCCGTACACTCCTGCGTCCGTGTTT ATTCGATCAGATTGGCGCGAACGAGACCATCGTCCTCAAGACGGAGGTCA ACCCGGCGCTGGTGGGAGGCTTGACGGTGCAGATCGGGGACAAGTTCATG GACCTCTCGATTTCGAGCAAGATCGCGTCCATGAAGGTGCGTCGCGCAGG ATTTAGGACAGATGGCCAAGGCAATCAACAGAAACACATCGATATGGAAA AGCACTGACAAAAAACACGGTACATAGAGTTTCAGCGATCGGCATCCCAT GTGTATGACCTCTCGCTGATCTCACTCTGTTGCTCCATTCAGGCGCCCCT GCTGCACGCGCCCCCTGTGCTTAGCGCGTGGTGTTTCCCGCCAATTCCTA ATACGTTTTCACCGTTCTGGAACACGAACATGCTTGAAACAAGTTTCATC CGCCCGTACCTCTTGCATGCTGCTGTTGAATGACTCCCCCCCCCTATGAG ATGTATGGAACGATCCTCCGTTTTCCGGCTCTTTCGAAAAAAAACAACGA AGCTCTCGATCGCGGTCTTGTCCTCTGTCCCCCTTGCTGCTTTGTTTCTG CAGACGCTCATGCAAGACTCGGTGGCGAGCTAAAGGGATAGGATAGAGGG AGACATCGGAAAGGCGCTATTTTTTGGAAATTGGGAATACTGTGAATGGT CTTTTGGGAATCAACGGGGGGGGGGCGGATAATACCGGCGTCTTATGGCA TGCTGAACTTTGTACGGTACCTTACGCGGATGACACCGATTCCCGTCTAC CCAAGGCCGATGTAGCTATGTTCTCGCCCGGATGCACCGTTGGGGGGCAC TGGTAGGTTCGGCCCTACCGCAAGACGCCTTGATGGTGGGAGAAGGGTAG GAGCTGCGGAGGAAGAGGCCTTATACTATTGTTCGCCAAGCTGTGTTGCC GATTCGGTTTGGCCCAATGAGGCTATTAAACGAGACCCGGGGATGGCTGT GTTTTGTCCCCGGGGTCACGTTTTTAAAACGAGACTGGCAGGTCTCGTTT ACCGGCTCCCCGGGCTGGCGGGCGAATACGGCAAGAGTTTTTATTTTTTT CGTTGTCGAAAATAAACAGAGAGGACATGTTATTGAAAACAGCAGTACTG CTGTTCAGCATCTGTTGTTGGAAGCAACTGGACCGCGACGTGGGCGTGTG TACTGCTGCGGCGCTGTCAGGGTGCTTCGAACGCACCGGTTCGTGTTTGC AGACGTGATGCTCGACGTGCCATCGAGACGAAACGACTCTGAGACCCTGC TCGATCCCACGTCACCCAGGCGTTCAGCACATTGTTGAGATGTGCGGACC TACACCCGGCTAACGATGTACGAAAGAGGACTGAAACGTTCGGCATCAAA ATTAATTGGATGTTCTCGTCGTTGCGTGGATGCCATTGACAGCGGGAAAT GCACCTTCGAGTGGATACTGCACCTTTCGACTCAACACTTGCGCGGGCCG CCCAAAAT
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7266:3708..7315-

>mRNA_E_fasciculatus_S2_contig7266.15462.1 ID=mRNA_E_fasciculatus_S2_contig7266.15462.1|Name=mRNA_E_fasciculatus_S2_contig7266.15462.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=672bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7266:3708..7315- (Ectocarpus fasciculatus EfasUO2)
ATGGCTCTTCGGTTGGCCGCGGAGAGATGCTGCATGGGGAAGACCGCCAC
CCGGTCCTTTGCTACCGCCGCCTCTAAGGCGACCGCCGCTTCCGCGAGCC
ACGACCCGCCGCTGAAGCTTTACGGCATCCCCGCCCGTTACGCGAACGCC
ACCTACTCGGCGGCGTCCAAGGCCGGGGAGCTGGAGATCGTGCAACGAGA
CCTCGACGCCTTCCAGCACATCATCCGTAACAACGCCAACTTCAAGGCGT
ACCTGACCAACCCCACGGTGTCGCGGAGCGCGAAGGTGGACATGGTTGAC
AAGGCCTTCGACGCCAAGTCCAAGACCTCTTCCGTGACCAAGAACCTGCT
CCTCGCCATGGCGGGGAACGCCAGGCTGGCGGACGCCGAGAAGGTGATCG
ACGCGTACACCCGCATGTTGAAGGCGAAGAAGGGGGAGATCGACGCCATC
GTCACCACCGCGGAGCCCCTTACCCCCCAGCAGGAGAAGGCCCTGGCGGC
CGGCCTCAAGGCGCAGATTGGCGCGAACGAGACCATCGTCCTCAAGACGG
AGGTCAACCCGGCGCTGGTGGGAGGCTTGACGGTGCAGATCGGGGACAAG
TTCATGGACCTCTCGATTTCGAGCAAGATCGCGTCCATGAAGACGCTCAT
GCAAGACTCGGTGGCGAGCTAA
back to top