mRNA_E_fasciculatus_S2_contig7261.15458.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7261.15458.1
Unique NamemRNA_E_fasciculatus_S2_contig7261.15458.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7261.15458.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ7_ECTSI)

HSP 1 Score: 410 bits (1054), Expect = 3.130e-143
Identity = 239/251 (95.22%), Postives = 240/251 (95.62%), Query Frame = 1 
Query:    1 MPATTAAAXXXXXXXXXXXXXXGRGLLMRAGEAVVRAAGTMASAGLHVRGQEFAALQAAALSAVGGLLPGLAAGSDGGNNATAIAEAVVALVRSCWESA-SEGGGDGREVVPVSAGRLLLSLNTVLPPSSLEASQAIAALLKQSSQQVAATLPVAARVLLYSSLSAFLMPPRLLHGDMGKVNDLEGRSRAYSELVAPVLGPFSAALAGWQGWTGPPPWPGFSDEGVSRELSCSCRVLSRLCRTFVSTPAKV 750
            MPATTAAAXXXXXXXXX     GRGLLMRAGEAVVRAA TMASAGLHVRG EFAALQAAALSAVGGLLPGLAAGSDG NNATAIAEAVVALVRSCWESA SEGGGDGREVVPVSAGRLLLSLNTVLPPSSLEASQA+AALLKQSSQ VAATLPVAARVLLYSSLSAFLMPPRLLHGDMGKVNDLEGRSRAYSELV PVLGPFSAALAGWQGWTGPPPWPGFSDEGVSRELSCSCRVLSRLCRTFVSTPAKV
Sbjct:    1 MPATTAAAXXXXXXXXXD----GRGLLMRAGEAVVRAAATMASAGLHVRGPEFAALQAAALSAVGGLLPGLAAGSDGDNNATAIAEAVVALVRSCWESAASEGGGDGREVVPVSAGRLLLSLNTVLPPSSLEASQAVAALLKQSSQ-VAATLPVAARVLLYSSLSAFLMPPRLLHGDMGKVNDLEGRSRAYSELVTPVLGPFSAALAGWQGWTGPPPWPGFSDEGVSRELSCSCRVLSRLCRTFVSTPAKV 246
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BLAST of mRNA_E_fasciculatus_S2_contig7261.15458.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI2_9PHAE)

HSP 1 Score: 409 bits (1052), Expect = 2.130e-137
Identity = 240/249 (96.39%), Postives = 242/249 (97.19%), Query Frame = 1 
Query:    1 MPATTAAAXXXXXXXXXXXXXXGRGLLMRAGEAVVRAAGTMASAGLHVRGQEFAALQAAALSAVGGLLPGLAAGSDGGNNATAIAEAVVALVRSCWESASEGGGDGREVVPVSAGRLLLSLNTVLPPSSLEASQAIAALLKQSSQQVAATLPVAARVLLYSSLSAFLMPPRLLHGDMGKVNDLEGRSRAYSELVAPVLGPFSAALAGWQGWTGPPPWPGFSDEGVSRELSCSCRVLSRLCRTFVSTPAK 747
            MPATTAAAXXXXXXXXXXXXX GRGLLMRAGEAVVRAAGTMASAGLHVRG EFAALQAAALSAVGGLLPGLAAG DG +NATAIAEAVVALVRSCWESASEG GDGREVVPVSAGRLLLSLNTVLPPSSLEASQA+A LLKQSSQ VAATLPVAARVLLYSSLSAFLMPPRLLHGDMGKVNDLEGRSRAYSELVAPVLGPFSAALAGWQGWTGPPPWPGFSDEGVSRELSCSCRVLSRLCRTFVSTPAK
Sbjct:    1 MPATTAAAXXXXXXXXXXXXX-GRGLLMRAGEAVVRAAGTMASAGLHVRGPEFAALQAAALSAVGGLLPGLAAGGDGDSNATAIAEAVVALVRSCWESASEGDGDGREVVPVSAGRLLLSLNTVLPPSSLEASQAVATLLKQSSQ-VAATLPVAARVLLYSSLSAFLMPPRLLHGDMGKVNDLEGRSRAYSELVAPVLGPFSAALAGWQGWTGPPPWPGFSDEGVSRELSCSCRVLSRLCRTFVSTPAK 247
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7261.15458.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.130e-14395.22protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.130e-13796.39protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7261contigE_fasciculatus_S2_contig7261:2296..6853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size756
Hectar predicted targeting categoryother localisation
Exons6
Cds size756
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7261.15458.1prot_E_fasciculatus_S2_contig7261.15458.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7261 2296..6853 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842390.8489842-CDS-E_fasciculatus_S2_contig7261:2295..24321696842390.8489842-CDS-E_fasciculatus_S2_contig7261:2295..2432Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7261 2296..2432 -
1696842390.8604329-CDS-E_fasciculatus_S2_contig7261:2796..28781696842390.8604329-CDS-E_fasciculatus_S2_contig7261:2796..2878Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7261 2797..2878 -
1696842390.8731022-CDS-E_fasciculatus_S2_contig7261:4232..43341696842390.8731022-CDS-E_fasciculatus_S2_contig7261:4232..4334Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7261 4233..4334 -
1696842390.8893325-CDS-E_fasciculatus_S2_contig7261:4779..49691696842390.8893325-CDS-E_fasciculatus_S2_contig7261:4779..4969Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7261 4780..4969 -
1696842390.8983867-CDS-E_fasciculatus_S2_contig7261:5776..58501696842390.8983867-CDS-E_fasciculatus_S2_contig7261:5776..5850Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7261 5777..5850 -
1696842390.9078305-CDS-E_fasciculatus_S2_contig7261:6682..68531696842390.9078305-CDS-E_fasciculatus_S2_contig7261:6682..6853Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7261 6683..6853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7261.15458.1

>prot_E_fasciculatus_S2_contig7261.15458.1 ID=prot_E_fasciculatus_S2_contig7261.15458.1|Name=mRNA_E_fasciculatus_S2_contig7261.15458.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=252bp
MPATTAAAAAAATTATGGDGGDGRGLLMRAGEAVVRAAGTMASAGLHVRG
QEFAALQAAALSAVGGLLPGLAAGSDGGNNATAIAEAVVALVRSCWESAS
EGGGDGREVVPVSAGRLLLSLNTVLPPSSLEASQAIAALLKQSSQQVAAT
LPVAARVLLYSSLSAFLMPPRLLHGDMGKVNDLEGRSRAYSELVAPVLGP
FSAALAGWQGWTGPPPWPGFSDEGVSRELSCSCRVLSRLCRTFVSTPAKV
C*
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mRNA from alignment at E_fasciculatus_S2_contig7261:2296..6853-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7261.15458.1 ID=mRNA_E_fasciculatus_S2_contig7261.15458.1|Name=mRNA_E_fasciculatus_S2_contig7261.15458.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4558bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7261:2296..6853- (Ectocarpus fasciculatus EfasUO2)
ATGCCGGCAACTACCGCCGCCGCCGCCGCCGCCGCCACTACCGCTACCGG
CGGCGACGGTGGCGACGGTAGAGGATTGCTGATGAGGGCGGGCGAAGCCG
TTGTTCGAGCGGCGGGCACGATGGCTTCGGCGGGGCTTCACGTCAGAGGA
CAGGAGTTTGCCGCGCTGCAGGTTCGCGCGCTCTCGCTCTCGCCACGTTC
TTCTGACATTTTTTGCTGACCGTAGCAAGAAACAGCAGTAGGGCTTGTCA
CTCATTTTTCTGTTTTTTTTCGCTCACCGTAGCAGTAAGCAAGAGTAGGG
TTGTCACTCGTTTATTGTTGTTGCTGTTGTTCTGAAGCGGAAACATTTTC
TTCTGTGTTTTGTAGAGTTGTTTCTTTCTTTTTTCTTTTGAGGCTGTTTT
TTTTTCACTCGATTTTCACTCTTTTTTGTGCTACGCACTCGTCTGCTAAG
AGGTTACCAGGTACAGTATTCATGTCGTGGCTGGCTACCGTGCGATTCAT
TGCAGTGTTTTGCGATTTCTCTTTTTTCCCCGCTCACCCCTTTCGTAGTG
GATCGATGAACTAACCCCGCGTTCTTAAAGGCGGTTAATTGCCGATATGA
AAGAACGGATTTAATGTCCTTGAAGCTACGACCGCTAGATTTCGAATGAA
ATAGGGGAAGGTGTATGCACGTGTAGAACGTGATACTTCATGGCACTGCA
CATTTTTTTTTGCTTTCGTTTTCAGCGTTTTTTGACGCCCCCAACATTTC
TTTTTGTTGTAGAGAGCGTTTTGCTTCCCCCGATGATTGGGTCGACTTGT
TTTTTTTTCGTTCACCACCTGAAACAAAAGTAGTGTGTCTGATTCGTCTT
TTGAGTTGTCGTTCACCGTATATTGTGTGCCGGTAATTGTTTGTGATTGG
TCTACCCGTTAACTCCCAATTTGTTTGTGATTGGTCCCTTTTTTTTTAGC
AGTCGTCCACCTCCTACAAGTTCAGTTCTGTTTTTCTGTTGTTGTTTCCG
CAGGCGGCCGCCTTGAGCGCTGTCGGAGGGCTTCTGCCTGGTCTAGCGGC
AGGAAGCGACGGAGGCAACAACGCCACGTACGTGCACGAACATGTTGACT
TATTCATGTTGACATGCATGACGCGCAAGAGGGAACAGGAACAGTTTTTA
ATTTCGTGAACGGAGAGCGTTGAATTTGGAAGGGAAACACGAAGGCAATT
GCTATGAAAGCACAACAATGACACACAATACATTGGTAGGTACTTAAGAA
GATGGAAAAGACTCTTCCTCAGTATATCTTCGTCTCGACGTGTTGTTGGA
ATGGAAAAAGGGCTGGCAGGGGCCCTATATTGTTTGTGAAGTTACGTTGT
GTTTCCATCTCTCCCAGCTTCTCTCGAAAGTGTAGCTTTCGTCGGCTGCT
TTTGTTTTGTCTTCATGATCGTCGCTTGTTCTATTCGTACAAGCGGTCTT
TAGGTGAGTTTTTTTTGTCCGTGTTCTCTTCGTGTGTGTACCTCTTTAGT
GTGTACCTTTTTAGTTTGGTTTCGCCAGTGCAACCTCCTTTCTCTCTCAA
GGTCTCAAGGAGGAAAACTAACTCCCCTTCAACAGAACGTGTTATGAAAA
CAATCACTTTTTTTCAGTAGAACATCTCTCTCTCTCTCTCTCTCTCTCTC
TTTTTTTCTTTCTCTCTCTGTTATTTTTCTCAAGGAGAAGGTCTTTCTCT
GGGTTCGTTATGTTCTCGCTCTTTTTCAAAACTCCCCTCCGGTCATTGCT
CTGTTTCCTAGTTGATTGACTGACGATCAAAATCTTTCCAAATCAGAAAA
AAATAAAAAAAACATTCCAATGTACATGTATCTTCGTCGATGGTTGCCGC
GCGCCTCATTTGGGGCACGGGCGGGGGGGTCCAGGGCTATCGCGGAGGCC
GTCGTTGCCCTGGTACGGAGCTGCTGGGAGAGCGCGAGCGAGGGGGGCGG
GGACGGCAGGGAGGTCGTCCCCGTGTCGGCTGGAAGGCTGCTGCTCTCGT
TGAACACCGTGCTGCCCCCGTCATCGCTGGAGGCGAGCCAGGCCATCGCC
GCTTTGCTCAAGCAATCCAGTCAGGTAGGTTTTGCTCCCCTCCCCCCTCT
TCGATAGGATAGATGGGGTAAGGGGAAACCTCTTCGATAGGATAGATGGG
GTAAGGGGAAAATTTTTGAGTAACCCTTTGGCAAAGAGTAGGGAGGAACT
ATTGGTCGGCCATCGGTGATCGGCCCTGTGGCAACAATGCTCCGTCCTCT
CCAGGTATGCGTGGTCAATATTCCATCTAATTAACCGCTACGGCACAACA
CCCACAAATCATGAGTAGCGCCCACCCCCCCACCGTGGATGTACCTCCTG
TTCGCCGTCCCCCCGGTGACAAAGTTTGAGGGTCTACGCTGTAAGCCACA
GTACGGTCGCTGATGATTTCGAGACCTCCCCCCTTGCCGCCTGAAGACCC
CGTGCATGCTTCGCCCCTTTATTGCTGGTAACCCTGTGATCGTGTGTGTG
TGTGTGTGGCTTTCGAGAGCAGGTGGCGGCTACGCTGCCGGTGGCCGCGC
GCGTGCTGCTGTACTCCAGCCTGTCGGCCTTCCTCATGCCTCCCCGGCTC
CTCCACGGCGACATGGGAAAGGTGCGTGGCCGTGAATAGGCCAGTCGGTA
CATAGGCAGGTCGGCGCACAGACACAAGCCAGCAGGGAGACGATTGAGAG
TGGGGAACGCCGTGTTAAAGTGTTAGGTTTTGGCAGTCCACGTTGTTTTC
GGTGCGCTGTTTCTTGTCGGTGCATTGCATCGAACGACCTCCTCATGGTC
GGTGCATGCCGTGGGTCGGTCGGTTGAGCAGACACAGCCAGCAGGACGTG
ACGGGTGTACCGTATTGCCGGTGTACTAGATTAACCGCGGCGCAAGAGGT
GTCTGGATCGGTTGGAACCGGTACTGGTAGTACGGGTGTTCGAAGGCATC
AGACGTCAGAGACTCCGGCGTCGTGATGTGCAGGAGGGGGGGTGTTGGGC
AAGGTGTACCAATTGGGCGAGACATGGATGTGGTGGTAGAGCTACCGCAG
GTGACATGACACAAGACCGGACGGTACGGTTTATCAAATGTGAAGACAAC
AACAGCAAATGTTTGTTGGGGAGCTCATAGAGAGGCTGGTGGGTGTTCTG
TTGTATCGTTGTTGCTAGCTTCTTTTTTTGTTTCCCACCCAATTTCCTCT
GCATGGACATTTCTGTTCTGTTTTGAAGGAAAGACCTCCCTCCGCATCGG
AAAGAAGACACCGACAAAACAAAAGTCGGAAGACTCCGGCAAGCCTTTAC
AAGTCTCTGACAAATGTCTGAATACACTGACAAATTTGTTTTTTGCAGCT
GCCGGATACATATCTCGATTGCTGTGCGTTTGATTGAGATTTTTTCTTTT
TGGGAGGCTTTGGAGGCTTTGGAGGAGGTGAATCTTGCCCTCCGAGCTCG
CCCCCCACTTGGACGTCGGAAGGCCAGCCCCTGATAATCAGTCACATTAC
TCTTGACGCTGATATGATTTCCTCCTCCACATGATCGAGGGGATCACTCG
TTAGAGGCAGGGAAGGAGGCAGAGAGGGGGGACGGGAGAAAAAGGCGGAA
ATGGTGTAATTTTTGGCACCGCACTCGTTTACGGATGCGCTCTTTGTGGA
TTGAACGTTCTCTACATGATGAATGATAATTTGTCTGGTTCGTGTTCGTG
TTGTTCATGTGCTGCTGCTGCTTGCTGGCGTTGATTGTTGCCGTTTACCG
CTGCTGCTTGCTGGCGGATGTTGTCGTTGTGGTTGTTGTTGTTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTTTCGTTGTGTGTGCTGTTATT
GCTGCTGCTAATGTTATTGTTGTGTGCATTCGTCGTCGTTTATTTTTTCG
CCAACATTGTTGCCGCCAGTTCACGTCGGCCTCCGCTGCCACTCACGTCT
TCCGCGATGCGCGACTGTTCCCCAGGTGAACGACCTCGAGGGGAGGTCCC
GAGCGTACTCGGAGCTGGTGGCGCCGGTCCTAGGACCATTCTCCGCCGCC
CTCGCAGGTAAGTTAGACGGAAATCTCGCAGCGGTAGAATGGCAGGCTCC
CATCGCTTCACTCCGGGATAAGGAAAAATTATCTGCACATACGTGTACCA
TATTTTGTGTCTTGGCTTACCACCTCAACCTTTCAGCGCAAGGAGTCTTA
CCAAGTCCCAAGACGTGTTCCCCTGCCGTACCCCCCCTCCATTGGTACCC
CCCCCTACTAAGACCCCACCCCCCGCCGTGCTTCGTGCTTGGTCTGGATG
CTTTGTTGCGATAAAAAGCGAGCATCACTGGTTCTCCCGCGTGCTTGCCA
CGACGAACCCATCTATTGATGAAAACCCTTTTTTCTTTCTTTTGTTTTTT
TGTTACCACTCTGCACGACAGGTTGGCAGGGCTGGACGGGACCGCCCCCT
TGGCCCGGGTTTTCCGACGAAGGCGTTTCGAGGGAGCTGTCGTGCAGCTG
CCGCGTCCTCTCCCGCCTCTGCAGGACCTTCGTGTCCACGCCCGCGAAAG
TATGCTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7261:2296..6853-

>mRNA_E_fasciculatus_S2_contig7261.15458.1 ID=mRNA_E_fasciculatus_S2_contig7261.15458.1|Name=mRNA_E_fasciculatus_S2_contig7261.15458.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=756bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7261:2296..6853- (Ectocarpus fasciculatus EfasUO2)
ATGCCGGCAACTACCGCCGCCGCCGCCGCCGCCGCCACTACCGCTACCGG
CGGCGACGGTGGCGACGGTAGAGGATTGCTGATGAGGGCGGGCGAAGCCG
TTGTTCGAGCGGCGGGCACGATGGCTTCGGCGGGGCTTCACGTCAGAGGA
CAGGAGTTTGCCGCGCTGCAGGCGGCCGCCTTGAGCGCTGTCGGAGGGCT
TCTGCCTGGTCTAGCGGCAGGAAGCGACGGAGGCAACAACGCCACGGCTA
TCGCGGAGGCCGTCGTTGCCCTGGTACGGAGCTGCTGGGAGAGCGCGAGC
GAGGGGGGCGGGGACGGCAGGGAGGTCGTCCCCGTGTCGGCTGGAAGGCT
GCTGCTCTCGTTGAACACCGTGCTGCCCCCGTCATCGCTGGAGGCGAGCC
AGGCCATCGCCGCTTTGCTCAAGCAATCCAGTCAGCAGGTGGCGGCTACG
CTGCCGGTGGCCGCGCGCGTGCTGCTGTACTCCAGCCTGTCGGCCTTCCT
CATGCCTCCCCGGCTCCTCCACGGCGACATGGGAAAGGTGAACGACCTCG
AGGGGAGGTCCCGAGCGTACTCGGAGCTGGTGGCGCCGGTCCTAGGACCA
TTCTCCGCCGCCCTCGCAGGTTGGCAGGGCTGGACGGGACCGCCCCCTTG
GCCCGGGTTTTCCGACGAAGGCGTTTCGAGGGAGCTGTCGTGCAGCTGCC
GCGTCCTCTCCCGCCTCTGCAGGACCTTCGTGTCCACGCCCGCGAAAGTA
TGCTGA
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