mRNA_E_fasciculatus_S2_contig7260.15457.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7260.15457.1
Unique NamemRNA_E_fasciculatus_S2_contig7260.15457.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7260.15457.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7260contigE_fasciculatus_S2_contig7260:6927..7456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size521
Hectar predicted targeting categoryother localisation
Exons2
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842390.7665925-UTR-E_fasciculatus_S2_contig7260:6926..70241696842390.7665925-UTR-E_fasciculatus_S2_contig7260:6926..7024Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7260 6927..7024 +
1696842390.790031-UTR-E_fasciculatus_S2_contig7260:7351..74031696842390.790031-UTR-E_fasciculatus_S2_contig7260:7351..7403Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7260 7352..7403 +
1696842390.801485-UTR-E_fasciculatus_S2_contig7260:7412..74561696842390.801485-UTR-E_fasciculatus_S2_contig7260:7412..7456Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7260 7413..7456 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842390.77904-CDS-E_fasciculatus_S2_contig7260:7024..73511696842390.77904-CDS-E_fasciculatus_S2_contig7260:7024..7351Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7260 7025..7351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7260.15457.1prot_E_fasciculatus_S2_contig7260.15457.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7260 7025..7351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7260.15457.1

>prot_E_fasciculatus_S2_contig7260.15457.1 ID=prot_E_fasciculatus_S2_contig7260.15457.1|Name=mRNA_E_fasciculatus_S2_contig7260.15457.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=109bp
MCNIVWGGSSCKGKGLSSVTTGRSGGCCSEPPRLLRPPPVRVSAGASSFL
SGRSLGSIFPARSTFLRWGVGGSGCRHVDLPACGMNLSVRISISHAVGYR
RDLGKRIG*
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mRNA from alignment at E_fasciculatus_S2_contig7260:6927..7456+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7260.15457.1 ID=mRNA_E_fasciculatus_S2_contig7260.15457.1|Name=mRNA_E_fasciculatus_S2_contig7260.15457.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=530bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7260:6927..7456+ (Ectocarpus fasciculatus EfasUO2)
GGGGGGGGGGATACTGGGGCGGTTAGCAGGGCTTACAAAACGTGACCCTG
CCTTTTTGTACCACCGCCCCTCTCGTCTAGTTCTTTCGTGACGGGGGCAT
GTGTAATATAGTGTGGGGTGGCAGTAGTTGTAAGGGGAAGGGGTTGTCGT
CAGTCACTACCGGTAGGAGCGGCGGCTGTTGCAGCGAGCCTCCTCGCCTT
TTACGACCACCGCCGGTCCGCGTGTCTGCGGGCGCTTCTTCCTTCTTGTC
CGGGCGCAGCCTCGGGAGCATATTTCCCGCGCGTAGTACATTCTTGCGTT
GGGGTGTGGGGGGTAGTGGTTGTCGGCATGTCGACCTACCTGCATGCGGA
ATGAATCTGTCTGTAAGAATCTCGATTTCGCATGCGGTAGGGTATCGTAG
AGACCTAGGGAAACGAATCGGGTAATTTCTGTGTTAACAAGTGGGGTAGT
AAAAAAACCAATCGAGTGTTTTTCCCAGCACGCAAGCACGCGCGTACGCA
TGCGAAGCGAATGATGTATAACAGGGGTGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7260:6927..7456+

>mRNA_E_fasciculatus_S2_contig7260.15457.1 ID=mRNA_E_fasciculatus_S2_contig7260.15457.1|Name=mRNA_E_fasciculatus_S2_contig7260.15457.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=327bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7260:6927..7456+ (Ectocarpus fasciculatus EfasUO2)
ATGTGTAATATAGTGTGGGGTGGCAGTAGTTGTAAGGGGAAGGGGTTGTC
GTCAGTCACTACCGGTAGGAGCGGCGGCTGTTGCAGCGAGCCTCCTCGCC
TTTTACGACCACCGCCGGTCCGCGTGTCTGCGGGCGCTTCTTCCTTCTTG
TCCGGGCGCAGCCTCGGGAGCATATTTCCCGCGCGTAGTACATTCTTGCG
TTGGGGTGTGGGGGGTAGTGGTTGTCGGCATGTCGACCTACCTGCATGCG
GAATGAATCTGTCTGTAAGAATCTCGATTTCGCATGCGGTAGGGTATCGT
AGAGACCTAGGGAAACGAATCGGGTAA
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