mRNA_E_fasciculatus_S2_contig7258.15450.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7258.15450.1
Unique NamemRNA_E_fasciculatus_S2_contig7258.15450.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7258.15450.1 vs.
Match: Glucose-6-phosphate (1-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQL5_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 5.500e-36
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = 1 
Query:    1 MHCTTLASLGFLGLQLSDVSGFHVPVPVQ-ARNMRSTPAMMATEGTNESGLKKLTISSGDASAEVFTLGGCVTSFK 225
            MH TTLA+ GFLGLQL+DV+GFHVPVPVQ A NMRSTPA MATEGTNESGLKKLTISSGDASAEVFTLGGCVTSFK
Sbjct:    1 MHSTTLAAFGFLGLQLTDVAGFHVPVPVQQAHNMRSTPARMATEGTNESGLKKLTISSGDASAEVFTLGGCVTSFK 76
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7258.15450.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Glucose-6-phosphate5.500e-3689.471-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7258contigE_fasciculatus_S2_contig7258:1126..2247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score133.7
Seed ortholog evalue4.2e-29
Seed eggNOG ortholog2880.D7FQL5
Model size258
KEGG rclassRC00563
KEGG koko:K01792
KEGG ReactionR02739
KEGG Pathwayko00010,ko01100,ko01110,ko01120,ko01130,map00010,map01100,map01110,map01120,map01130
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.glucose-6-phosphate 1-epimerase activity
EggNOG OGsCOG0676@1,KOG1594@2759
Ec32 ortholog descriptionconserved carbohydrate binding protein
Ec32 orthologEc-01_009180.1
EC5.1.3.15
Cds size258
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842390.2190611-CDS-E_fasciculatus_S2_contig7258:1125..12611696842390.2190611-CDS-E_fasciculatus_S2_contig7258:1125..1261Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7258 1126..1261 +
1696842390.2362185-CDS-E_fasciculatus_S2_contig7258:2125..22471696842390.2362185-CDS-E_fasciculatus_S2_contig7258:2125..2247Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7258 2126..2247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7258.15450.1prot_E_fasciculatus_S2_contig7258.15450.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7258 1126..2247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7258.15450.1

>prot_E_fasciculatus_S2_contig7258.15450.1 ID=prot_E_fasciculatus_S2_contig7258.15450.1|Name=mRNA_E_fasciculatus_S2_contig7258.15450.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=86bp
MHCTTLASLGFLGLQLSDVSGFHVPVPVQARNMRSTPAMMATEGTNESGL
KKLTISSGDASAEVFTLGGCVTSFKASLPSPLLAY*
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mRNA from alignment at E_fasciculatus_S2_contig7258:1126..2247+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7258.15450.1 ID=mRNA_E_fasciculatus_S2_contig7258.15450.1|Name=mRNA_E_fasciculatus_S2_contig7258.15450.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1122bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7258:1126..2247+ (Ectocarpus fasciculatus EfasUO2)
ATGCACTGCACTACTCTGGCCTCGCTCGGTTTCCTGGGCCTTCAGCTCAG
CGATGTATCCGGTTTCCATGTGCCGGTGCCGGTGCAGGCTCGTAACATGC
GCAGCACGCCGGCAATGATGGCGACAGAGGGCACAAGTAAGTCTCCCCCG
CATATCTAGTCTAGATTGTTGACCTGTTGCAGTGCGAACCACCCACGCTG
TGTGTTCGTGGAGGACATGAGGATAGATACTCACTTATGTGGCCTTGGCG
GTCGAGCAGGGTTCGCCGCACCGGCTGCATCTTTGACCCCGGACTTGTGA
ATTGTGCAGGATGGACAGAAACAGAGTGCAATACATACATGATCCGAGGA
TCCGCCGCATCCTGTTTGGTTTTCTTCGTACGCACGTTCGCACTCTGTAC
AGGCAGTATCGTCTGAATGTTGGATTCTATGATTCTATACCGGCCGCTGC
TGCTGCTGCTGTTGCTGTACCGCTGCTTCCTGCTGGCTTCGCTCGGAGCA
GTTGCAGTAGCCACTCTCGTTGCACCTTCACCTTCCTAGGCGATTCAGAA
GTGCATTGCACAATCTACAGCAGTAGTGGATATTTACCCTACAAGACGAC
ACGGACGGATGGATGCAAGATACTCCGTATTCTGCAGCGGAGGTCTCGCG
TTTGGCATCTAACGACACCCAGCACAGATTCCCCTCGACCAAGCAAGGCG
TATCTGGTTCGTTGTAAGGATATTCCTACAGCAGTGATGCCGTGGTGTGA
TGGCTATTGCCTCCACACCGAGCAAATATTCTGAATCAGATGTCCAATGC
CCCCATGTATGTACAGAAATACCCCCGGTGGCTGCACTGACCGGTGGTTC
GGGAGAACAACGCCTAACTACGCCCCCTTCCTCGGATATTCCAACTGCTG
TGTGCTTGTGTGTGTCACGCTCTATCTCTGTCTCTCTCTCTCTCTCTCTG
CCTCTGTTCGTTGGGCGATGTTGTCGCGAAACCCCCCTCTCGTTGCTCAG
ACGAGAGCGGGCTGAAGAAGCTGACCATCAGCTCCGGGGATGCGTCTGCG
GAGGTGTTCACCCTCGGTGGCTGCGTGACCAGCTTCAAGGCGAGTCTCCC
CTCCCCTCTCCTCGCGTACTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7258:1126..2247+

>mRNA_E_fasciculatus_S2_contig7258.15450.1 ID=mRNA_E_fasciculatus_S2_contig7258.15450.1|Name=mRNA_E_fasciculatus_S2_contig7258.15450.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=258bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7258:1126..2247+ (Ectocarpus fasciculatus EfasUO2)
ATGCACTGCACTACTCTGGCCTCGCTCGGTTTCCTGGGCCTTCAGCTCAG
CGATGTATCCGGTTTCCATGTGCCGGTGCCGGTGCAGGCTCGTAACATGC
GCAGCACGCCGGCAATGATGGCGACAGAGGGCACAAACGAGAGCGGGCTG
AAGAAGCTGACCATCAGCTCCGGGGATGCGTCTGCGGAGGTGTTCACCCT
CGGTGGCTGCGTGACCAGCTTCAAGGCGAGTCTCCCCTCCCCTCTCCTCG
CGTACTGA
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